data_08T # _chem_comp.id 08T _chem_comp.name "[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium " _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 Be F3 N5 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-10-18 _chem_comp.pdbx_modified_date 2011-12-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.201 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 08T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3U5Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 08T PA PA P 0 1 N N N 20.482 -45.143 41.309 2.264 -0.984 -0.942 PA 08T 1 08T PB PB P 0 1 N N N 18.739 -45.192 43.437 4.823 0.346 -0.257 PB 08T 2 08T BE BE BE 0 0 N N N 16.182 -44.835 44.070 6.712 1.379 1.127 BE 08T 3 08T "C5'" "C5'" C 0 1 N N N 20.843 -43.910 39.212 -0.157 -2.027 -0.508 "C5'" 08T 4 08T "O5'" "O5'" O 0 1 N N N 21.142 -44.029 40.580 0.883 -1.125 -0.127 "O5'" 08T 5 08T "C4'" "C4'" C 0 1 N N R 21.491 -42.802 38.509 -1.322 -1.908 0.477 "C4'" 08T 6 08T "O4'" "O4'" O 0 1 N N N 21.751 -41.720 39.322 -1.930 -0.610 0.361 "O4'" 08T 7 08T "C3'" "C3'" C 0 1 N N S 22.757 -43.294 38.062 -2.404 -2.952 0.139 "C3'" 08T 8 08T "O3'" "O3'" O 0 1 N N N 22.820 -43.023 36.679 -2.608 -3.837 1.242 "O3'" 08T 9 08T "C2'" "C2'" C 0 1 N N R 23.737 -42.594 38.767 -3.676 -2.109 -0.123 "C2'" 08T 10 08T "O2'" "O2'" O 0 1 N N N 24.604 -41.959 37.820 -4.827 -2.732 0.452 "O2'" 08T 11 08T "C1'" "C1'" C 0 1 N N R 23.116 -41.579 39.631 -3.342 -0.783 0.606 "C1'" 08T 12 08T N1 N1 N 0 1 Y N N 27.462 -41.899 41.537 -7.721 2.008 0.733 N1 08T 13 08T O1A O1A O 0 1 N N N 21.471 -46.025 42.096 1.962 -0.403 -2.413 O1A 08T 14 08T O1B O1B O 0 1 N N N 18.182 -46.442 42.888 5.574 -0.913 -0.463 O1B 08T 15 08T F1 F1 F 0 1 N N N 16.174 -46.189 43.878 7.031 1.975 2.342 F1 08T 16 08T C2 C2 C 0 1 Y N N 27.068 -41.681 40.282 -7.372 0.984 1.490 C2 08T 17 08T O2A O2A O 0 1 N N N 19.810 -45.998 40.264 2.906 -2.312 -1.058 O2A 08T 18 08T O2B O2B O 0 1 N N N 19.772 -45.451 44.598 5.091 1.339 -1.495 O2B 08T 19 08T F2 F2 F 0 1 N N N 15.415 -44.180 43.098 7.466 0.222 0.966 F2 08T 20 08T N3 N3 N 0 1 Y N N 25.754 -41.634 39.970 -6.221 0.361 1.350 N3 08T 21 08T O3A O3A O 0 1 N N N 19.482 -44.428 42.331 3.249 0.022 -0.160 O3A 08T 22 08T O3B O3B O 0 1 N N N 17.521 -44.321 43.988 5.312 1.046 1.108 O3B 08T 23 08T F3 F3 F 0 1 N N N 15.626 -44.519 45.314 6.992 2.262 0.090 F3 08T 24 08T C4 C4 C 0 1 Y N N 24.688 -41.792 40.849 -5.350 0.748 0.424 C4 08T 25 08T C5 C5 C 0 1 Y N N 25.199 -42.021 42.160 -5.674 1.833 -0.407 C5 08T 26 08T C6 C6 C 0 1 Y N N 26.548 -42.068 42.479 -6.915 2.466 -0.219 C6 08T 27 08T N6 N6 N 0 1 N N N 26.942 -42.304 43.826 -7.288 3.540 -1.008 N6 08T 28 08T N7 N7 N 0 1 Y N N 24.211 -42.180 43.017 -4.629 2.016 -1.249 N7 08T 29 08T C8 C8 C 0 1 Y N N 23.069 -42.061 42.374 -3.707 1.134 -0.994 C8 08T 30 08T N9 N9 N 0 1 Y N N 23.277 -41.878 41.069 -4.105 0.328 0.030 N9 08T 31 08T H1 H1 H 0 1 N N N 19.756 -43.763 39.125 -0.503 -1.780 -1.511 H1 08T 32 08T H2 H2 H 0 1 N N N 21.164 -44.842 38.723 0.225 -3.048 -0.497 H2 08T 33 08T H3 H3 H 0 1 N N N 20.820 -42.466 37.704 -0.963 -2.060 1.495 H3 08T 34 08T H4 H4 H 0 1 N N N 22.901 -44.371 38.231 -2.127 -3.512 -0.755 H4 08T 35 08T H5 H5 H 0 1 N N N 23.648 -43.333 36.332 -3.279 -4.515 1.084 H5 08T 36 08T H6 H6 H 0 1 N N N 24.307 -43.288 39.402 -3.819 -1.942 -1.191 H6 08T 37 08T H7 H7 H 0 1 N N N 25.279 -41.476 38.282 -5.023 -3.607 0.090 H7 08T 38 08T H8 H8 H 0 1 N N N 23.556 -40.585 39.465 -3.539 -0.872 1.674 H8 08T 39 08T H9 H9 H 0 1 N N N 21.445 -46.912 41.756 1.540 0.467 -2.414 H9 08T 40 08T H10 H10 H 0 1 N N N 27.807 -41.541 39.507 -8.058 0.644 2.252 H10 08T 41 08T H11 H11 H 0 1 N N N 19.857 -46.386 44.744 4.629 2.186 -1.427 H11 08T 42 08T H12 H12 H 0 1 N N N 27.940 -42.311 43.885 -8.148 3.968 -0.869 H12 08T 43 08T H13 H13 H 0 1 N N N 26.579 -41.579 44.411 -6.691 3.865 -1.700 H13 08T 44 08T H14 H14 H 0 1 N N N 22.096 -42.105 42.840 -2.766 1.052 -1.518 H14 08T 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 08T "O3'" "C3'" SING N N 1 08T "O2'" "C2'" SING N N 2 08T "C3'" "C4'" SING N N 3 08T "C3'" "C2'" SING N N 4 08T "C4'" "C5'" SING N N 5 08T "C4'" "O4'" SING N N 6 08T "C2'" "C1'" SING N N 7 08T "C5'" "O5'" SING N N 8 08T "O4'" "C1'" SING N N 9 08T "C1'" N9 SING N N 10 08T N3 C2 DOUB Y N 11 08T N3 C4 SING Y N 12 08T O2A PA DOUB N N 13 08T C2 N1 SING Y N 14 08T "O5'" PA SING N N 15 08T C4 N9 SING Y N 16 08T C4 C5 DOUB Y N 17 08T N9 C8 SING Y N 18 08T PA O1A SING N N 19 08T PA O3A SING N N 20 08T N1 C6 DOUB Y N 21 08T C5 C6 SING Y N 22 08T C5 N7 SING Y N 23 08T O3A PB SING N N 24 08T C8 N7 DOUB Y N 25 08T C6 N6 SING N N 26 08T O1B PB DOUB N N 27 08T PB O3B SING N N 28 08T PB O2B SING N N 29 08T F1 BE SING N N 30 08T BE F3 SING N N 31 08T O3B BE SING N N 32 08T BE F2 SING N N 33 08T "C5'" H1 SING N N 34 08T "C5'" H2 SING N N 35 08T "C4'" H3 SING N N 36 08T "C3'" H4 SING N N 37 08T "O3'" H5 SING N N 38 08T "C2'" H6 SING N N 39 08T "O2'" H7 SING N N 40 08T "C1'" H8 SING N N 41 08T O1A H9 SING N N 42 08T C2 H10 SING N N 43 08T O2B H11 SING N N 44 08T N6 H12 SING N N 45 08T N6 H13 SING N N 46 08T C8 H14 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 08T InChI InChI 1.03 "InChI=1S/C10H15N5O10P2.Be.3FH/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20;;;;/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20);;3*1H/q;+4;;;/p-4/t4-,6-,7-,10-;;;;/m1..../s1" 08T InChIKey InChI 1.03 WOGYHYSOODLXII-KWIZKVQNSA-J 08T SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[Be](F)(F)F)[C@@H](O)[C@H]3O" 08T SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[Be](F)(F)F)[CH](O)[CH]3O" 08T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[Be](OP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)(F)(F)F" 08T SMILES "OpenEye OEToolkits" 1.7.2 "[Be](OP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 08T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 08T "Create component" 2011-10-18 RCSB #