data_09C # _chem_comp.id 09C _chem_comp.name "(3S,5R)-3,5-bis(6-bromo-1H-indol-3-yl)piperazin-2-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H16 Br2 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "cis-3,4-dihydrohamacanthin B" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-26 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 488.175 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 09C _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3T07 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 09C C1 C1 C 0 1 N N N 9.942 0.712 -1.393 1.079 1.842 -1.120 C1 09C 1 09C N1 N1 N 0 1 N N N 11.304 -1.119 -2.074 -0.047 -0.259 -0.629 N1 09C 2 09C O1 O1 O 0 1 N N N 9.735 1.711 -0.695 2.096 2.490 -1.244 O1 09C 3 09C C2 C2 C 0 1 N N S 11.053 -0.212 -0.977 1.130 0.567 -0.327 C2 09C 4 09C N2 N2 N 0 1 N N N 9.125 0.388 -2.532 -0.042 2.294 -1.691 N2 09C 5 09C N3 N3 N 0 1 Y N N 13.702 -2.557 -4.402 -3.787 -2.092 -1.020 N3 09C 6 09C N4 N4 N 0 1 Y N N 14.604 0.569 -1.524 3.776 -1.629 -1.645 N4 09C 7 09C BR1 BR1 BR 0 0 N N N 13.501 -5.943 -8.247 -8.369 -0.066 0.945 BR1 09C 8 09C BR2 BR2 BR 0 0 N N N 16.442 4.142 1.691 8.217 -0.226 1.050 BR2 09C 9 09C C3 C3 C 0 1 Y N N 11.228 -4.648 -6.810 -5.753 1.048 0.802 C3 09C 10 09C C4 C4 C 0 1 Y N N 13.714 3.052 1.539 5.555 0.772 1.204 C4 09C 11 09C C5 C5 C 0 1 Y N N 10.719 -3.770 -5.823 -4.422 1.068 0.491 C5 09C 12 09C C6 C6 C 0 1 Y N N 12.732 2.206 0.993 4.231 0.845 0.875 C6 09C 13 09C C7 C7 C 0 1 Y N N 12.867 -1.878 -3.649 -2.519 -1.586 -1.108 C7 09C 14 09C C8 C8 C 0 1 Y N N 13.439 -0.031 -1.716 2.486 -1.174 -1.596 C8 09C 15 09C C9 C9 C 0 1 Y N N 13.477 -4.128 -6.186 -5.973 -1.167 -0.106 C9 09C 16 09C C10 C10 C 0 1 Y N N 15.392 2.238 0.010 5.896 -0.996 -0.390 C10 09C 17 09C C11 C11 C 0 1 N N N 9.289 -0.833 -3.410 -1.311 1.575 -1.628 C11 09C 18 09C C12 C12 C 0 1 N N R 10.663 -1.435 -3.181 -1.276 0.549 -0.494 C12 09C 19 09C C13 C13 C 0 1 Y N N 12.615 -4.821 -6.989 -6.530 -0.064 0.505 C13 09C 20 09C C14 C14 C 0 1 Y N N 15.032 3.059 1.046 6.389 -0.145 0.576 C14 09C 21 09C C15 C15 C 0 1 Y N N 11.598 -2.140 -3.943 -2.483 -0.350 -0.588 C15 09C 22 09C C16 C16 C 0 1 Y N N 12.486 0.423 -0.888 2.380 -0.195 -0.684 C16 09C 23 09C C17 C17 C 0 1 Y N N 12.989 -3.280 -5.231 -4.620 -1.168 -0.430 C17 09C 24 09C C18 C18 C 0 1 Y N N 14.443 1.414 -0.527 4.551 -0.935 -0.743 C18 09C 25 09C C19 C19 C 0 1 Y N N 11.618 -3.066 -5.009 -3.838 -0.038 -0.128 C19 09C 26 09C C20 C20 C 0 1 Y N N 13.108 1.375 -0.062 3.711 -0.007 -0.101 C20 09C 27 09C HA HA H 0 1 N N N 10.709 -0.600 -0.007 1.143 0.803 0.737 HA 09C 28 09C HAD HAD H 0 1 N N N 10.540 -5.196 -7.438 -6.204 1.904 1.282 HAD 09C 29 09C HAE HAE H 0 1 N N N 13.451 3.710 2.354 5.957 1.431 1.959 HAE 09C 30 09C HAF HAF H 0 1 N N N 9.654 -3.644 -5.699 -3.825 1.937 0.724 HAF 09C 31 09C HAG HAG H 0 1 N N N 11.723 2.200 1.377 3.589 1.559 1.370 HAG 09C 32 09C HAH HAH H 0 1 N N N 13.176 -1.186 -2.879 -1.673 -2.105 -1.533 HAH 09C 33 09C HAI HAI H 0 1 N N N 13.275 -0.800 -2.456 1.674 -1.548 -2.201 HAI 09C 34 09C HAJ HAJ H 0 1 N N N 14.543 -4.250 -6.306 -6.585 -2.028 -0.332 HAJ 09C 35 09C HAK HAK H 0 1 N N N 16.402 2.242 -0.373 6.551 -1.705 -0.873 HAK 09C 36 09C H1AL H1AL H 0 0 N N N 9.186 -0.543 -4.466 -2.118 2.286 -1.447 H1AL 09C 37 09C H2AL H2AL H 0 0 N N N 8.516 -1.574 -3.157 -1.487 1.064 -2.574 H2AL 09C 38 09C H12 H12 H 0 1 N N N 12.171 -0.771 -2.432 0.025 -0.670 -1.548 H12 09C 39 09C H13 H13 H 0 1 N N N 8.387 1.023 -2.762 -0.011 3.138 -2.169 H13 09C 40 09C H14 H14 H 0 1 N N N 14.700 -2.528 -4.352 -4.060 -2.970 -1.329 H14 09C 41 09C H15 H15 H 0 1 N N N 15.447 0.410 -2.039 4.096 -2.337 -2.226 H15 09C 42 09C H16 H16 H 0 1 N N N 9.796 -1.892 -3.679 -1.275 1.064 0.466 H16 09C 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 09C C1 C2 SING N N 1 09C C1 O1 DOUB N N 2 09C N1 C2 SING N N 3 09C C2 C16 SING N N 4 09C C2 HA SING N N 5 09C N2 C1 SING N N 6 09C N3 C7 SING Y N 7 09C N4 C18 SING Y N 8 09C BR1 C13 SING N N 9 09C C3 C5 SING Y N 10 09C C3 HAD SING N N 11 09C C4 HAE SING N N 12 09C C5 C19 DOUB Y N 13 09C C5 HAF SING N N 14 09C C6 C4 DOUB Y N 15 09C C6 HAG SING N N 16 09C C7 HAH SING N N 17 09C C8 N4 SING Y N 18 09C C8 C16 DOUB Y N 19 09C C8 HAI SING N N 20 09C C9 C17 DOUB Y N 21 09C C9 HAJ SING N N 22 09C C10 C14 DOUB Y N 23 09C C10 HAK SING N N 24 09C C11 C12 SING N N 25 09C C11 N2 SING N N 26 09C C11 H1AL SING N N 27 09C C11 H2AL SING N N 28 09C C12 N1 SING N N 29 09C C13 C3 DOUB Y N 30 09C C13 C9 SING Y N 31 09C C14 C4 SING Y N 32 09C C14 BR2 SING N N 33 09C C15 C7 DOUB Y N 34 09C C15 C12 SING N N 35 09C C16 C20 SING Y N 36 09C C17 C19 SING Y N 37 09C C17 N3 SING Y N 38 09C C18 C20 DOUB Y N 39 09C C18 C10 SING Y N 40 09C C19 C15 SING Y N 41 09C C20 C6 SING Y N 42 09C N1 H12 SING N N 43 09C N2 H13 SING N N 44 09C N3 H14 SING N N 45 09C N4 H15 SING N N 46 09C C12 H16 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 09C SMILES ACDLabs 12.01 "Brc1cc2c(cc1)c(cn2)C5C(=O)NCC(c3cnc4cc(Br)ccc34)N5" 09C InChI InChI 1.03 "InChI=1S/C20H16Br2N4O/c21-10-1-3-12-14(7-23-16(12)5-10)18-9-25-20(27)19(26-18)15-8-24-17-6-11(22)2-4-13(15)17/h1-8,18-19,23-24,26H,9H2,(H,25,27)/t18-,19-/m0/s1" 09C InChIKey InChI 1.03 OXVVLWOQGFZGEO-OALUTQOASA-N 09C SMILES_CANONICAL CACTVS 3.370 "Brc1ccc2c([nH]cc2[C@@H]3CNC(=O)[C@@H](N3)c4c[nH]c5cc(Br)ccc45)c1" 09C SMILES CACTVS 3.370 "Brc1ccc2c([nH]cc2[CH]3CNC(=O)[CH](N3)c4c[nH]c5cc(Br)ccc45)c1" 09C SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1cc2c(cc1Br)[nH]cc2[C@H]3C(=O)NCC(N3)c4c[nH]c5c4ccc(c5)Br" 09C SMILES "OpenEye OEToolkits" 1.7.2 "c1cc2c(cc1Br)[nH]cc2C3CNC(=O)C(N3)c4c[nH]c5c4ccc(c5)Br" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 09C "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,5R)-3,5-bis(6-bromo-1H-indol-3-yl)piperazin-2-one" 09C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(3S)-3,5-bis(6-bromanyl-1H-indol-3-yl)piperazin-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 09C "Create component" 2011-07-26 RCSB 09C "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 09C _pdbx_chem_comp_synonyms.name "cis-3,4-dihydrohamacanthin B" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##