data_0BH # _chem_comp.id 0BH _chem_comp.name "N-[[(3R)-1-[6-(1-benzothiophen-4-ylmethylamino)pyrimidin-4-yl]-3-oxidanyl-piperidin-3-yl]methyl]-2-oxidanyl-4-[[(3S)-3-propan-2-yl-2-azaspiro[3.3]heptan-2-yl]methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H44 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-03 _chem_comp.pdbx_modified_date 2021-10-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 640.838 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0BH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OQP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0BH C10 C1 C 0 1 Y N N 42.424 -30.516 22.973 -6.811 1.740 0.662 C10 0BH 1 0BH C13 C2 C 0 1 Y N N 44.234 -31.757 24.344 -4.425 1.586 0.346 C13 0BH 2 0BH C17 C3 C 0 1 N N R 44.219 -35.791 26.566 0.393 1.070 -0.233 C17 0BH 3 0BH C20 C4 C 0 1 N N N 43.327 -37.436 24.333 2.868 0.217 1.009 C20 0BH 4 0BH C21 C5 C 0 1 N N N 42.735 -36.009 26.317 1.741 1.745 -0.497 C21 0BH 5 0BH C24 C6 C 0 1 Y N N 41.061 -39.246 24.968 5.202 0.539 -0.660 C24 0BH 6 0BH C28 C7 C 0 1 Y N N 41.055 -42.546 23.650 8.980 -1.537 -0.611 C28 0BH 7 0BH C01 C8 C 0 1 N N N 40.284 -27.443 19.923 -12.564 -1.107 -0.166 C01 0BH 8 0BH C02 C9 C 0 1 N N N 40.856 -26.472 20.995 -11.228 -0.362 -0.147 C02 0BH 9 0BH C03 C10 C 0 1 N N N 40.522 -25.149 20.275 -11.382 0.941 0.641 C03 0BH 10 0BH C04 C11 C 0 1 N N S 42.378 -26.623 21.141 -10.165 -1.238 0.519 C04 0BH 11 0BH C06 C12 C 0 1 N N N 43.236 -28.647 21.237 -8.149 -0.226 1.428 C06 0BH 12 0BH C07 C13 C 0 1 Y N N 43.555 -29.762 22.257 -6.840 0.415 1.047 C07 0BH 13 0BH C08 C14 C 0 1 Y N N 45.047 -30.033 22.596 -5.672 -0.330 1.083 C08 0BH 14 0BH C09 C15 C 0 1 Y N N 45.398 -31.046 23.661 -4.469 0.245 0.737 C09 0BH 15 0BH C11 C16 C 0 1 Y N N 42.805 -31.523 24.014 -5.609 2.336 0.309 C11 0BH 16 0BH C14 C17 C 0 1 N N N 44.608 -32.771 25.361 -3.141 2.208 -0.026 C14 0BH 17 0BH C16 C18 C 0 1 N N N 44.404 -34.381 27.094 -0.729 2.102 -0.359 C16 0BH 18 0BH C18 C19 C 0 1 N N N 45.011 -36.124 25.451 0.391 0.483 1.182 C18 0BH 19 0BH C19 C20 C 0 1 N N N 44.768 -37.444 24.849 1.554 -0.504 1.318 C19 0BH 20 0BH C23 C21 C 0 1 Y N N 41.458 -38.231 25.933 4.042 1.306 -0.715 C23 0BH 21 0BH C25 C22 C 0 1 Y N N 40.000 -40.124 25.556 6.404 1.135 -1.031 C25 0BH 22 0BH C27 C23 C 0 1 N N N 39.855 -41.570 23.468 7.578 -0.987 -0.561 C27 0BH 23 0BH C29 C24 C 0 1 Y N N 41.606 -42.924 25.028 9.368 -2.304 -1.666 C29 0BH 24 0BH C30 C25 C 0 1 Y N N 42.804 -43.880 25.207 10.656 -2.820 -1.730 C30 0BH 25 0BH C31 C26 C 0 1 Y N N 43.375 -44.424 23.912 11.554 -2.560 -0.723 C31 0BH 26 0BH C32 C27 C 0 1 Y N N 42.786 -44.038 22.574 11.177 -1.774 0.371 C32 0BH 27 0BH C33 C28 C 0 1 Y N N 41.682 -43.155 22.360 9.884 -1.248 0.434 C33 0BH 28 0BH C34 C29 C 0 1 Y N N 41.363 -42.979 20.827 9.681 -0.456 1.636 C34 0BH 29 0BH C35 C30 C 0 1 Y N N 42.232 -43.746 19.967 10.730 -0.372 2.430 C35 0BH 30 0BH C38 C31 C 0 1 Y N N 39.886 -38.956 27.811 5.281 3.100 -1.462 C38 0BH 31 0BH C42 C32 C 0 1 N N N 43.330 -27.069 22.853 -8.352 -2.220 0.052 C42 0BH 32 0BH C43 C33 C 0 1 N N N 42.697 -25.882 22.356 -9.820 -2.501 -0.273 C43 0BH 33 0BH C44 C34 C 0 1 N N N 43.480 -24.617 21.889 -10.464 -3.846 0.060 C44 0BH 34 0BH C45 C35 C 0 1 N N N 43.322 -23.972 23.274 -10.286 -4.200 -1.428 C45 0BH 35 0BH C46 C36 C 0 1 N N N 42.349 -25.108 23.642 -10.293 -2.687 -1.714 C46 0BH 36 0BH N05 N1 N 0 1 N N N 42.631 -27.876 21.855 -8.774 -0.812 0.235 N05 0BH 37 0BH N15 N2 N 0 1 N N N 43.660 -33.502 26.166 -2.005 1.484 0.010 N15 0BH 38 0BH N22 N3 N 0 1 N N N 42.488 -37.295 25.564 2.820 0.760 -0.355 N22 0BH 39 0BH N26 N4 N 0 1 N N N 39.394 -41.231 24.814 7.587 0.413 -0.994 N26 0BH 40 0BH N37 N5 N 0 1 Y N N 39.446 -39.978 26.840 6.401 2.407 -1.423 N37 0BH 41 0BH N39 N6 N 0 1 Y N N 40.944 -38.086 27.248 4.124 2.573 -1.118 N39 0BH 42 0BH O12 O1 O 0 1 N N N 41.923 -32.323 24.746 -5.578 3.638 -0.069 O12 0BH 43 0BH O40 O2 O 0 1 N N N 44.703 -36.591 27.666 0.189 0.024 -1.184 O40 0BH 44 0BH O41 O3 O 0 1 N N N 45.840 -32.931 25.506 -3.106 3.376 -0.365 O41 0BH 45 0BH S36 S1 S 0 1 Y N N 43.125 -44.388 21.108 12.089 -1.276 1.791 S36 0BH 46 0BH H1 H1 H 0 1 N N N 41.388 -30.326 22.733 -7.726 2.313 0.632 H1 0BH 47 0BH H2 H2 H 0 1 N N N 43.163 -36.588 23.652 3.011 1.031 1.719 H2 0BH 48 0BH H3 H3 H 0 1 N N N 43.096 -38.376 23.811 3.696 -0.486 1.091 H3 0BH 49 0BH H4 H4 H 0 1 N N N 42.212 -36.054 27.284 1.751 2.152 -1.508 H4 0BH 50 0BH H5 H5 H 0 1 N N N 42.343 -35.167 25.727 1.889 2.553 0.221 H5 0BH 51 0BH H6 H6 H 0 1 N N N 41.471 -39.350 23.974 5.171 -0.489 -0.333 H6 0BH 52 0BH H8 H8 H 0 1 N N N 40.427 -28.482 20.255 -12.924 -1.234 0.855 H8 0BH 53 0BH H9 H9 H 0 1 N N N 39.210 -27.247 19.786 -13.292 -0.533 -0.739 H9 0BH 54 0BH H10 H10 H 0 1 N N N 40.810 -27.287 18.969 -12.428 -2.085 -0.628 H10 0BH 55 0BH H11 H11 H 0 1 N N N 40.332 -26.565 21.958 -10.923 -0.135 -1.169 H11 0BH 56 0BH H12 H12 H 0 1 N N N 40.858 -24.301 20.890 -11.594 0.711 1.685 H12 0BH 57 0BH H13 H13 H 0 1 N N N 41.035 -25.122 19.302 -10.458 1.516 0.576 H13 0BH 58 0BH H14 H14 H 0 1 N N N 39.435 -25.081 20.119 -12.202 1.524 0.222 H14 0BH 59 0BH H15 H15 H 0 1 N N N 42.977 -26.417 20.242 -10.364 -1.421 1.575 H15 0BH 60 0BH H16 H16 H 0 1 N N N 44.160 -28.197 20.845 -7.970 -1.008 2.166 H16 0BH 61 0BH H17 H17 H 0 1 N N N 42.636 -29.039 20.402 -8.812 0.528 1.853 H17 0BH 62 0BH H18 H18 H 0 1 N N N 45.828 -29.501 22.074 -5.705 -1.367 1.385 H18 0BH 63 0BH H19 H19 H 0 1 N N N 46.424 -31.256 23.926 -3.562 -0.339 0.767 H19 0BH 64 0BH H20 H20 H 0 1 N N N 43.996 -34.297 28.112 -0.527 2.942 0.305 H20 0BH 65 0BH H21 H21 H 0 1 N N N 45.471 -34.112 27.104 -0.782 2.457 -1.388 H21 0BH 66 0BH H22 H22 H 0 1 N N N 44.834 -35.364 24.675 0.507 1.286 1.910 H22 0BH 67 0BH H23 H23 H 0 1 N N N 46.064 -36.088 25.766 -0.551 -0.037 1.359 H23 0BH 68 0BH H24 H24 H 0 1 N N N 44.896 -38.234 25.604 1.416 -1.327 0.617 H24 0BH 69 0BH H25 H25 H 0 1 N N N 45.467 -37.615 24.017 1.583 -0.894 2.336 H25 0BH 70 0BH H26 H26 H 0 1 N N N 40.179 -40.663 22.937 6.936 -1.567 -1.224 H26 0BH 71 0BH H27 H27 H 0 1 N N N 39.049 -42.059 22.901 7.199 -1.049 0.459 H27 0BH 72 0BH H28 H28 H 0 1 N N N 41.139 -42.506 25.907 8.668 -2.513 -2.462 H28 0BH 73 0BH H29 H29 H 0 1 N N N 43.203 -44.140 26.176 10.951 -3.427 -2.572 H29 0BH 74 0BH H30 H30 H 0 1 N N N 44.217 -45.099 23.946 12.555 -2.964 -0.776 H30 0BH 75 0BH H31 H31 H 0 1 N N N 40.571 -42.346 20.456 8.741 0.028 1.861 H31 0BH 76 0BH H32 H32 H 0 1 N N N 42.264 -43.849 18.892 10.747 0.177 3.360 H32 0BH 77 0BH H34 H34 H 0 1 N N N 39.485 -38.855 28.809 5.313 4.130 -1.784 H34 0BH 78 0BH H35 H35 H 0 1 N N N 44.424 -27.071 22.743 -8.005 -2.698 0.968 H35 0BH 79 0BH H36 H36 H 0 1 N N N 43.065 -27.315 23.892 -7.678 -2.371 -0.791 H36 0BH 80 0BH H37 H37 H 0 1 N N N 44.524 -24.819 21.609 -9.866 -4.463 0.731 H37 0BH 81 0BH H38 H38 H 0 1 N N N 42.984 -24.061 21.080 -11.506 -3.768 0.369 H38 0BH 82 0BH H39 H39 H 0 1 N N N 44.244 -23.949 23.874 -9.333 -4.681 -1.651 H39 0BH 83 0BH H40 H40 H 0 1 N N N 42.868 -22.970 23.261 -11.138 -4.728 -1.856 H40 0BH 84 0BH H41 H41 H 0 1 N N N 41.297 -24.790 23.696 -11.287 -2.282 -1.905 H41 0BH 85 0BH H42 H42 H 0 1 N N N 42.619 -25.640 24.566 -9.558 -2.379 -2.459 H42 0BH 86 0BH H44 H44 H 0 1 N N N 42.665 -33.427 26.106 -2.032 0.553 0.281 H44 0BH 87 0BH H45 H45 H 0 1 N N N 39.518 -42.051 25.373 8.421 0.835 -1.254 H45 0BH 88 0BH H46 H46 H 0 1 N N N 42.416 -32.876 25.341 -5.443 4.257 0.661 H46 0BH 89 0BH H47 H47 H 0 1 N N N 45.631 -36.429 27.792 -0.647 -0.449 -1.076 H47 0BH 90 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0BH C10 C07 DOUB Y N 1 0BH C10 C11 SING Y N 2 0BH C13 C09 SING Y N 3 0BH C13 C11 DOUB Y N 4 0BH C13 C14 SING N N 5 0BH C17 C21 SING N N 6 0BH C17 C16 SING N N 7 0BH C17 C18 SING N N 8 0BH C17 O40 SING N N 9 0BH C20 C19 SING N N 10 0BH C20 N22 SING N N 11 0BH C21 N22 SING N N 12 0BH C24 C23 DOUB Y N 13 0BH C24 C25 SING Y N 14 0BH C28 C27 SING N N 15 0BH C28 C29 DOUB Y N 16 0BH C28 C33 SING Y N 17 0BH C01 C02 SING N N 18 0BH C02 C03 SING N N 19 0BH C02 C04 SING N N 20 0BH C04 C43 SING N N 21 0BH C04 N05 SING N N 22 0BH C06 C07 SING N N 23 0BH C06 N05 SING N N 24 0BH C07 C08 SING Y N 25 0BH C08 C09 DOUB Y N 26 0BH C11 O12 SING N N 27 0BH C14 N15 SING N N 28 0BH C14 O41 DOUB N N 29 0BH C16 N15 SING N N 30 0BH C18 C19 SING N N 31 0BH C23 N22 SING N N 32 0BH C23 N39 SING Y N 33 0BH C25 N26 SING N N 34 0BH C25 N37 DOUB Y N 35 0BH C27 N26 SING N N 36 0BH C29 C30 SING Y N 37 0BH C30 C31 DOUB Y N 38 0BH C31 C32 SING Y N 39 0BH C32 C33 DOUB Y N 40 0BH C32 S36 SING Y N 41 0BH C33 C34 SING Y N 42 0BH C34 C35 DOUB Y N 43 0BH C35 S36 SING Y N 44 0BH C38 N37 SING Y N 45 0BH C38 N39 DOUB Y N 46 0BH C42 C43 SING N N 47 0BH C42 N05 SING N N 48 0BH C43 C44 SING N N 49 0BH C43 C46 SING N N 50 0BH C44 C45 SING N N 51 0BH C45 C46 SING N N 52 0BH C10 H1 SING N N 53 0BH C20 H2 SING N N 54 0BH C20 H3 SING N N 55 0BH C21 H4 SING N N 56 0BH C21 H5 SING N N 57 0BH C24 H6 SING N N 58 0BH C01 H8 SING N N 59 0BH C01 H9 SING N N 60 0BH C01 H10 SING N N 61 0BH C02 H11 SING N N 62 0BH C03 H12 SING N N 63 0BH C03 H13 SING N N 64 0BH C03 H14 SING N N 65 0BH C04 H15 SING N N 66 0BH C06 H16 SING N N 67 0BH C06 H17 SING N N 68 0BH C08 H18 SING N N 69 0BH C09 H19 SING N N 70 0BH C16 H20 SING N N 71 0BH C16 H21 SING N N 72 0BH C18 H22 SING N N 73 0BH C18 H23 SING N N 74 0BH C19 H24 SING N N 75 0BH C19 H25 SING N N 76 0BH C27 H26 SING N N 77 0BH C27 H27 SING N N 78 0BH C29 H28 SING N N 79 0BH C30 H29 SING N N 80 0BH C31 H30 SING N N 81 0BH C34 H31 SING N N 82 0BH C35 H32 SING N N 83 0BH C38 H34 SING N N 84 0BH C42 H35 SING N N 85 0BH C42 H36 SING N N 86 0BH C44 H37 SING N N 87 0BH C44 H38 SING N N 88 0BH C45 H39 SING N N 89 0BH C45 H40 SING N N 90 0BH C46 H41 SING N N 91 0BH C46 H42 SING N N 92 0BH N15 H44 SING N N 93 0BH N26 H45 SING N N 94 0BH O12 H46 SING N N 95 0BH O40 H47 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0BH InChI InChI 1.03 "InChI=1S/C36H44N6O3S/c1-24(2)33-35(11-4-12-35)21-42(33)19-25-8-9-28(29(43)16-25)34(44)38-20-36(45)13-5-14-41(22-36)32-17-31(39-23-40-32)37-18-26-6-3-7-30-27(26)10-15-46-30/h3,6-10,15-17,23-24,33,43,45H,4-5,11-14,18-22H2,1-2H3,(H,38,44)(H,37,39,40)/t33-,36+/m0/s1" 0BH InChIKey InChI 1.03 FQPKMDSGULSMPX-MSEJLTFDSA-N 0BH SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@@H]1N(Cc2ccc(c(O)c2)C(=O)NC[C@]3(O)CCCN(C3)c4cc(NCc5cccc6sccc56)ncn4)CC17CCC7" 0BH SMILES CACTVS 3.385 "CC(C)[CH]1N(Cc2ccc(c(O)c2)C(=O)NC[C]3(O)CCCN(C3)c4cc(NCc5cccc6sccc56)ncn4)CC17CCC7" 0BH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H]1C2(CCC2)CN1Cc3ccc(c(c3)O)C(=O)NC[C@@]4(CCCN(C4)c5cc(ncn5)NCc6cccc7c6ccs7)O" 0BH SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C1C2(CCC2)CN1Cc3ccc(c(c3)O)C(=O)NCC4(CCCN(C4)c5cc(ncn5)NCc6cccc7c6ccs7)O" # _pdbx_chem_comp_identifier.comp_id 0BH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[(3~{R})-1-[6-(1-benzothiophen-4-ylmethylamino)pyrimidin-4-yl]-3-oxidanyl-piperidin-3-yl]methyl]-2-oxidanyl-4-[[(3~{S})-3-propan-2-yl-2-azaspiro[3.3]heptan-2-yl]methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0BH "Create component" 2021-06-03 PDBE 0BH "Initial release" 2021-10-20 RCSB ##