data_0DY # _chem_comp.id 0DY _chem_comp.name "N~1~-(3-aminobenzyl)-N~2~-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-aspartamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H27 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "HONH-iBM-Asn-NHBn(m-NH2)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-11-07 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 393.437 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0DY _chem_comp.pdbx_model_coordinates_details "not provided" _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1A85 _chem_comp.pdbx_subcomponent_list "HMI ASN DBP" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0DY N N1 N 0 1 N N N 25.697 59.973 53.918 5.060 -1.095 1.527 N HMI 1 0DY OH O1 O 0 1 N N N 24.724 58.994 54.017 5.581 -2.402 1.693 OH HMI 2 0DY C1 C1 C 0 1 N N N 26.992 59.633 53.901 4.250 -0.820 0.485 C1 HMI 3 0DY O1 O2 O 0 1 N N N 27.389 58.441 53.948 4.041 -1.665 -0.359 O1 HMI 4 0DY CA C2 C 0 1 N N R 27.937 60.755 53.438 3.606 0.537 0.370 CA HMI 5 0DY CB C3 C 0 1 N N N 29.227 60.870 54.309 4.463 1.434 -0.526 CB HMI 6 0DY CG C4 C 0 1 N N N 30.099 62.106 54.126 3.914 2.862 -0.492 CG HMI 7 0DY CD1 C5 C 0 1 N N N 29.775 63.073 55.243 3.972 3.397 0.940 CD1 HMI 8 0DY CD2 C6 C 0 1 N N N 31.553 61.693 54.166 4.758 3.754 -1.404 CD2 HMI 9 0DY C C7 C 0 1 N N N 28.279 60.497 51.986 2.232 0.391 -0.233 C HMI 10 0DY O O3 O 0 1 N N N 27.804 61.206 51.098 2.027 0.758 -1.371 O HMI 11 0DY N1 N2 N 0 1 N N N 29.089 59.486 51.721 1.232 -0.147 0.492 N ASN 12 0DY CA1 C8 C 0 1 N N R 29.443 59.233 50.336 -0.085 -0.352 -0.116 CA ASN 13 0DY C2 C9 C 0 1 N N N 28.350 58.408 49.630 -1.158 0.067 0.857 C ASN 14 0DY O2 O5 O 0 1 N N N 28.501 58.028 48.459 -0.852 0.495 1.949 O ASN 15 0DY CB1 C10 C 0 1 N N N 30.799 58.559 50.213 -0.262 -1.832 -0.463 CB ASN 16 0DY CG1 C11 C 0 1 N N N 31.220 58.371 48.754 0.714 -2.213 -1.547 CG ASN 17 0DY OD1 O6 O 0 1 N N N 31.567 57.266 48.361 1.396 -1.361 -2.076 OD1 ASN 18 0DY ND2 N3 N 0 1 N N N 31.230 59.458 47.956 0.829 -3.501 -1.928 ND2 ASN 19 0DY N2 N4 N 0 1 N N N 27.292 58.069 50.374 -2.457 -0.034 0.511 N DBP 20 0DY CB2 C12 C 0 1 N N N 26.143 57.342 49.848 -3.500 0.373 1.456 CB DBP 21 0DY CG2 C13 C 0 1 Y N N 26.056 55.924 49.388 -4.854 0.162 0.831 CG DBP 22 0DY CD11 C14 C 0 0 Y N N 26.846 54.916 49.995 -5.507 -1.047 0.989 CD1 DBP 23 0DY CE1 C15 C 0 1 Y N N 26.685 53.572 49.681 -6.750 -1.245 0.417 CE1 DBP 24 0DY CD21 C16 C 0 0 Y N N 25.111 55.557 48.427 -5.445 1.178 0.106 CD2 DBP 25 0DY CE2 C17 C 0 1 Y N N 24.948 54.209 48.114 -6.694 0.983 -0.470 CE2 DBP 26 0DY CZ C18 C 0 1 Y N N 25.730 53.213 48.724 -7.344 -0.235 -0.315 CZ DBP 27 0DY NE2 N5 N 0 1 N N N 23.980 53.909 47.273 -7.294 2.008 -1.204 NE2 DBP 28 0DY HN H1 H 0 1 N N N 25.433 60.936 53.859 5.283 -0.400 2.165 HN HMI 29 0DY HOH H2 H 0 1 N N N 24.501 58.680 53.149 6.151 -2.502 2.468 HOH HMI 30 0DY HA H3 H 0 1 N N N 27.425 61.721 53.555 3.523 0.985 1.360 HA HMI 31 0DY HB1 H4 H 0 1 N N N 28.903 60.863 55.360 5.491 1.432 -0.165 HB1 HMI 32 0DY HB2 H5 H 0 1 N N N 29.859 60.028 53.990 4.436 1.059 -1.549 HB2 HMI 33 0DY HG H6 H 0 1 N N N 29.908 62.593 53.158 2.881 2.862 -0.839 HG HMI 34 0DY HD11 H7 H 0 0 N N N 29.696 62.524 56.193 5.009 3.433 1.273 HD11 HMI 35 0DY HD12 H8 H 0 0 N N N 30.574 63.825 55.320 3.545 4.399 0.971 HD12 HMI 36 0DY HD13 H9 H 0 0 N N N 28.819 63.573 55.029 3.402 2.739 1.597 HD13 HMI 37 0DY HD21 H10 H 0 0 N N N 31.935 61.593 53.139 4.717 3.373 -2.424 HD21 HMI 38 0DY HD22 H11 H 0 0 N N N 32.136 62.457 54.701 4.367 4.772 -1.380 HD22 HMI 39 0DY HD23 H12 H 0 0 N N N 31.646 60.729 54.687 5.792 3.754 -1.058 HD23 HMI 40 0DY H H14 H 0 1 N N N 29.448 58.911 52.456 1.384 -0.398 1.417 H ASN 41 0DY HA1 H16 H 0 1 N N N 29.517 60.209 49.833 -0.164 0.246 -1.023 HA ASN 42 0DY HB21 H17 H 0 0 N N N 31.549 59.187 50.716 -0.075 -2.438 0.424 HB2 ASN 43 0DY HB3 H18 H 0 1 N N N 30.727 57.564 50.676 -1.279 -2.004 -0.813 HB3 ASN 44 0DY HD24 H19 H 0 0 N N N 30.929 60.258 48.476 0.283 -4.182 -1.504 HD21 ASN 45 0DY HD25 H20 H 0 0 N N N 31.498 59.464 46.993 1.457 -3.746 -2.625 HD22 ASN 46 0DY HN1 H22 H 0 1 N N N 27.289 58.327 51.340 -2.701 -0.376 -0.363 HN1 DBP 47 0DY HB11 H24 H 0 0 N N N 25.414 57.388 50.671 -3.421 -0.225 2.364 HB11 DBP 48 0DY HB22 H25 H 0 0 N N N 26.061 57.841 48.871 -3.374 1.427 1.704 HB21 DBP 49 0DY HD14 H26 H 0 0 N N N 27.593 55.200 50.721 -5.044 -1.838 1.560 HD11 DBP 50 0DY HC11 H27 H 0 0 N N N 27.286 52.818 50.167 -7.257 -2.190 0.541 HC11 DBP 51 0DY HC21 H28 H 0 0 N N N 24.514 56.309 47.933 -4.937 2.124 -0.013 HC21 DBP 52 0DY HCZ1 H29 H 0 0 N N N 25.594 52.176 48.455 -8.315 -0.391 -0.762 HCZ1 DBP 53 0DY HE21 H30 H 0 0 N N N 23.116 53.833 47.771 -6.839 2.858 -1.312 HE21 DBP 54 0DY HE22 H31 H 0 0 N N N 23.904 54.628 46.582 -8.167 1.870 -1.606 HE22 DBP 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0DY N OH SING N N 1 0DY N C1 SING N N 2 0DY N HN SING N N 3 0DY OH HOH SING N N 4 0DY C1 O1 DOUB N N 5 0DY C1 CA SING N N 6 0DY CA CB SING N N 7 0DY CA C SING N N 8 0DY CA HA SING N N 9 0DY CB CG SING N N 10 0DY CB HB1 SING N N 11 0DY CB HB2 SING N N 12 0DY CG CD1 SING N N 13 0DY CG CD2 SING N N 14 0DY CG HG SING N N 15 0DY CD1 HD11 SING N N 16 0DY CD1 HD12 SING N N 17 0DY CD1 HD13 SING N N 18 0DY CD2 HD21 SING N N 19 0DY CD2 HD22 SING N N 20 0DY CD2 HD23 SING N N 21 0DY C O DOUB N N 22 0DY N1 CA1 SING N N 23 0DY N1 H SING N N 24 0DY CA1 C2 SING N N 25 0DY CA1 CB1 SING N N 26 0DY CA1 HA1 SING N N 27 0DY C2 O2 DOUB N N 28 0DY CB1 CG1 SING N N 29 0DY CB1 HB21 SING N N 30 0DY CB1 HB3 SING N N 31 0DY CG1 OD1 DOUB N N 32 0DY CG1 ND2 SING N N 33 0DY ND2 HD24 SING N N 34 0DY ND2 HD25 SING N N 35 0DY N2 CB2 SING N N 36 0DY N2 HN1 SING N N 37 0DY CB2 CG2 SING N N 38 0DY CB2 HB11 SING N N 39 0DY CB2 HB22 SING N N 40 0DY CG2 CD11 DOUB Y N 41 0DY CG2 CD21 SING Y N 42 0DY CD11 CE1 SING Y N 43 0DY CD11 HD14 SING N N 44 0DY CE1 CZ DOUB Y N 45 0DY CE1 HC11 SING N N 46 0DY CD21 CE2 DOUB Y N 47 0DY CD21 HC21 SING N N 48 0DY CE2 CZ SING Y N 49 0DY CE2 NE2 SING N N 50 0DY CZ HCZ1 SING N N 51 0DY NE2 HE21 SING N N 52 0DY NE2 HE22 SING N N 53 0DY C N1 SING N N 54 0DY C2 N2 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0DY SMILES ACDLabs 10.04 "O=C(NO)C(C(=O)NC(C(=O)NCc1cc(N)ccc1)CC(=O)N)CC(C)C" 0DY SMILES_CANONICAL CACTVS 3.352 "CC(C)C[C@@H](C(=O)NO)C(=O)N[C@H](CC(N)=O)C(=O)NCc1cccc(N)c1" 0DY SMILES CACTVS 3.352 "CC(C)C[CH](C(=O)NO)C(=O)N[CH](CC(N)=O)C(=O)NCc1cccc(N)c1" 0DY InChI InChI 1.03 "InChI=1S/C18H27N5O5/c1-10(2)6-13(17(26)23-28)16(25)22-14(8-15(20)24)18(27)21-9-11-4-3-5-12(19)7-11/h3-5,7,10,13-14,28H,6,8-9,19H2,1-2H3,(H2,20,24)(H,21,27)(H,22,25)(H,23,26)/t13-,14-/m0/s1" 0DY InChIKey InChI 1.03 LYVDOPZAZLWTSE-KBPBESRZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0DY "SYSTEMATIC NAME" ACDLabs 10.04 "N~1~-(3-aminobenzyl)-N~2~-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-aspartamide" 0DY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-N-[(2S)-4-amino-1-[(3-aminophenyl)methylamino]-1,4-dioxo-butan-2-yl]-N'-hydroxy-2-(2-methylpropyl)propanediamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0DY "Create component" 2008-11-07 RCSB 0DY "Modify aromatic_flag" 2011-06-04 RCSB 0DY "Modify descriptor" 2011-06-04 RCSB 0DY "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0DY _pdbx_chem_comp_synonyms.name "HONH-iBM-Asn-NHBn(m-NH2)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##