data_0G4 # _chem_comp.id 0G4 _chem_comp.name ;[[[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy -oxidanyl-phosphoryl]amino]phosphonic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H14 F N4 O11 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "dCTP analog" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-06 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.202 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0G4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VCS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0G4 F5 F5 F 0 1 N N N 28.890 -15.124 -17.052 -3.722 2.866 -2.137 F5 0G4 1 0G4 C5 C5 C 0 1 N N N 29.527 -14.131 -16.438 -4.273 2.163 -1.123 C5 0G4 2 0G4 C4 C4 C 0 1 N N N 30.978 -14.229 -16.212 -5.285 2.734 -0.322 C4 0G4 3 0G4 N4 N4 N 0 1 N N N 31.683 -15.317 -16.629 -5.721 4.016 -0.568 N4 0G4 4 0G4 N3 N3 N 0 1 N N N 31.555 -13.200 -15.607 -5.813 2.029 0.669 N3 0G4 5 0G4 C2 C2 C 0 1 N N N 30.848 -12.140 -15.216 -5.400 0.787 0.916 C2 0G4 6 0G4 O2 O2 O 0 1 N N N 31.427 -11.202 -14.649 -5.903 0.159 1.834 O2 0G4 7 0G4 C6 C6 C 0 1 N N N 28.850 -12.993 -16.015 -3.866 0.897 -0.862 C6 0G4 8 0G4 N1 N1 N 0 1 N N N 29.544 -12.039 -15.417 -4.438 0.213 0.171 N1 0G4 9 0G4 "C1'" "C1'" C 0 1 N N S 28.849 -10.855 -14.940 -4.008 -1.156 0.465 "C1'" 0G4 10 0G4 "O4'" "O4'" O 0 1 N N N 27.884 -10.502 -15.924 -2.987 -1.547 -0.464 "O4'" 0G4 11 0G4 "C2'" "C2'" C 0 1 N N N 28.199 -11.195 -13.597 -3.446 -1.223 1.907 "C2'" 0G4 12 0G4 "S3'" "S3'" S 0 1 N N N 26.567 -10.611 -13.820 -2.155 -2.521 1.760 "S3'" 0G4 13 0G4 "C4'" "C4'" C 0 1 N N R 26.689 -9.938 -15.414 -2.384 -2.796 -0.043 "C4'" 0G4 14 0G4 "C5'" "C5'" C 0 1 N N N 25.626 -10.579 -16.293 -1.039 -3.015 -0.737 "C5'" 0G4 15 0G4 "O5'" "O5'" O 0 1 N N N 25.966 -11.960 -16.450 -0.153 -1.943 -0.408 "O5'" 0G4 16 0G4 PA PA P 0 1 N N N 25.047 -12.929 -17.346 1.355 -1.849 -0.966 PA 0G4 17 0G4 O1A O1A O 0 1 N N N 25.740 -14.287 -17.343 2.084 -3.092 -0.630 O1A 0G4 18 0G4 O2A O2A O 0 1 N N N 23.611 -12.787 -16.892 1.324 -1.660 -2.565 O2A 0G4 19 0G4 O3A O3A O 0 1 N N N 25.154 -12.381 -18.870 2.099 -0.591 -0.291 O3A 0G4 20 0G4 PB PB P 0 1 N N N 23.866 -11.869 -19.727 3.638 -0.132 -0.175 PB 0G4 21 0G4 O2B O2B O 0 1 N N N 22.540 -12.280 -18.893 4.248 0.077 -1.651 O2B 0G4 22 0G4 O1B O1B O 0 1 N N N 24.065 -12.403 -21.188 4.411 -1.175 0.535 O1B 0G4 23 0G4 N3B N3B N 0 1 N N N 24.026 -10.346 -19.919 3.729 1.315 0.680 N3B 0G4 24 0G4 PG PG P 0 1 N N N 25.676 -9.745 -19.355 5.325 1.831 0.824 PG 0G4 25 0G4 O3G O3G O 0 1 N N N 26.539 -11.034 -19.635 5.369 3.214 1.646 O3G 0G4 26 0G4 O1G O1G O 0 1 N N N 26.010 -8.643 -20.367 6.112 0.804 1.542 O1G 0G4 27 0G4 O2C O2C O 0 1 N N N 25.315 -9.201 -17.876 5.950 2.057 -0.643 O2C 0G4 28 0G4 H1 H1 H 0 1 N N N 32.671 -15.359 -16.482 -5.333 4.530 -1.293 H1 0G4 29 0G4 H2 H2 H 0 1 N N N 31.212 -16.074 -17.082 -6.417 4.406 -0.016 H2 0G4 30 0G4 H3 H3 H 0 1 N N N 27.786 -12.891 -16.170 -3.096 0.436 -1.463 H3 0G4 31 0G4 H4 H4 H 0 1 N N N 29.565 -10.033 -14.792 -4.858 -1.831 0.375 H4 0G4 32 0G4 H5 H5 H 0 1 N N N 28.213 -12.279 -13.410 -3.006 -0.269 2.197 H5 0G4 33 0G4 H6 H6 H 0 1 N N N 28.700 -10.673 -12.768 -4.222 -1.520 2.612 H6 0G4 34 0G4 H7 H7 H 0 1 N N N 26.647 -8.839 -15.384 -3.057 -3.634 -0.226 H7 0G4 35 0G4 H8 H8 H 0 1 N N N 25.604 -10.085 -17.275 -0.607 -3.959 -0.404 H8 0G4 36 0G4 H9 H9 H 0 1 N N N 24.640 -10.488 -15.815 -1.188 -3.045 -1.816 H9 0G4 37 0G4 H10 H10 H 0 1 N N N 23.275 -13.637 -16.634 0.861 -0.863 -2.858 H10 0G4 38 0G4 H11 H11 H 0 1 N N N 21.991 -12.842 -19.427 3.789 0.748 -2.175 H11 0G4 39 0G4 H12 H12 H 0 1 N N N 23.919 -10.130 -20.890 3.157 2.026 0.250 H12 0G4 40 0G4 H13 H13 H 0 1 N N N 27.105 -10.881 -20.382 6.260 3.571 1.767 H13 0G4 41 0G4 H14 H14 H 0 1 N N N 25.368 -8.253 -17.865 5.483 2.718 -1.171 H14 0G4 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0G4 O1B PB DOUB N N 1 0G4 O1G PG DOUB N N 2 0G4 N3B PB SING N N 3 0G4 N3B PG SING N N 4 0G4 PB O2B SING N N 5 0G4 PB O3A SING N N 6 0G4 O3G PG SING N N 7 0G4 PG O2C SING N N 8 0G4 O3A PA SING N N 9 0G4 PA O1A DOUB N N 10 0G4 PA O2A SING N N 11 0G4 PA "O5'" SING N N 12 0G4 F5 C5 SING N N 13 0G4 N4 C4 SING N N 14 0G4 "O5'" "C5'" SING N N 15 0G4 C5 C4 SING N N 16 0G4 C5 C6 DOUB N N 17 0G4 "C5'" "C4'" SING N N 18 0G4 C4 N3 DOUB N N 19 0G4 C6 N1 SING N N 20 0G4 "O4'" "C4'" SING N N 21 0G4 "O4'" "C1'" SING N N 22 0G4 N3 C2 SING N N 23 0G4 N1 C2 SING N N 24 0G4 N1 "C1'" SING N N 25 0G4 "C4'" "S3'" SING N N 26 0G4 C2 O2 DOUB N N 27 0G4 "C1'" "C2'" SING N N 28 0G4 "S3'" "C2'" SING N N 29 0G4 N4 H1 SING N N 30 0G4 N4 H2 SING N N 31 0G4 C6 H3 SING N N 32 0G4 "C1'" H4 SING N N 33 0G4 "C2'" H5 SING N N 34 0G4 "C2'" H6 SING N N 35 0G4 "C4'" H7 SING N N 36 0G4 "C5'" H8 SING N N 37 0G4 "C5'" H9 SING N N 38 0G4 O2A H10 SING N N 39 0G4 O2B H11 SING N N 40 0G4 N3B H12 SING N N 41 0G4 O3G H13 SING N N 42 0G4 O2C H14 SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0G4 InChI InChI 1.03 "InChI=1S/C8H14FN4O11P3S/c9-4-1-13(8(14)11-7(4)10)5-3-28-6(23-5)2-22-27(20,21)24-26(18,19)12-25(15,16)17/h1,5-6H,2-3H2,(H,20,21)(H2,10,11,14)(H4,12,15,16,17,18,19)/t5-,6+/m0/s1" 0G4 InChIKey InChI 1.03 LBSQECIRXSOKHJ-NTSWFWBYSA-N 0G4 SMILES_CANONICAL CACTVS 3.370 "NC1=NC(=O)N(C=C1F)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2" 0G4 SMILES CACTVS 3.370 "NC1=NC(=O)N(C=C1F)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2" 0G4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)N2C=C(C(=NC2=O)N)F" 0G4 SMILES "OpenEye OEToolkits" 1.7.6 "C1C(OC(S1)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)N2C=C(C(=NC2=O)N)F" # _pdbx_chem_comp_identifier.comp_id 0G4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.7.6 _pdbx_chem_comp_identifier.identifier "[[[[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0G4 "Create component" 2012-01-06 RCSB 0G4 "Initial release" 2014-08-27 RCSB 0G4 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0G4 _pdbx_chem_comp_synonyms.name "dCTP analog" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##