data_0G6
#
_chem_comp.id 0G6
_chem_comp.name "D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H34 Cl N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms PPACK
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2008-09-14
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 453.986
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0G6
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FXY
_chem_comp.pdbx_subcomponent_list "DPN PRO AR7 0QE"
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0G6 N N N 0 1 N N N N N N 20.518 11.878 12.614 3.674 -1.120 -1.915 N DPN 1
0G6 CA CA C 0 1 N N R N N N 21.054 11.229 13.842 3.547 -0.662 -0.525 CA DPN 2
0G6 C C C 0 1 N N N N N N 20.069 10.210 14.390 2.099 -0.706 -0.111 C DPN 3
0G6 O O O 0 1 N N N N N N 19.548 9.376 13.649 1.314 -1.398 -0.725 O DPN 4
0G6 CB CB C 0 1 N N N N N N 22.373 10.521 13.531 4.366 -1.576 0.390 CB DPN 5
0G6 CG CG C 0 1 Y N N N N N 23.535 11.449 13.361 5.830 -1.438 0.056 CG DPN 6
0G6 CD1 CD1 C 0 1 Y N N N N N 23.903 12.316 14.382 6.599 -0.488 0.701 CD1 DPN 7
0G6 CD2 CD2 C 0 1 Y N N N N N 24.270 11.452 12.179 6.403 -2.266 -0.890 CD2 DPN 8
0G6 CE1 CE1 C 0 1 Y N N N N N 24.987 13.172 14.229 7.941 -0.362 0.396 CE1 DPN 9
0G6 CE2 CE2 C 0 1 Y N N N N N 25.356 12.304 12.016 7.746 -2.140 -1.196 CE2 DPN 10
0G6 CZ CZ C 0 1 Y N N N N N 25.714 13.165 13.043 8.514 -1.186 -0.555 CZ DPN 11
0G6 N1 N1 N 0 1 N N N N N N 19.778 10.281 15.696 1.676 0.023 0.941 N PRO 12
0G6 CA1 CA1 C 0 1 N N S N N N 18.847 9.328 16.304 0.297 0.073 1.449 CA PRO 13
0G6 C1 C1 C 0 1 N N N N N N 17.414 9.453 15.787 -0.630 0.567 0.369 C PRO 14
0G6 O1 O1 O 0 1 N N N N N N 16.916 10.551 15.528 -0.190 0.852 -0.725 O PRO 15
0G6 CB1 CB1 C 0 1 N N N N N N 18.948 9.632 17.798 0.284 1.054 2.641 CB PRO 16
0G6 CG1 CG1 C 0 1 N N N N N N 19.328 11.074 17.849 1.536 1.933 2.381 CG PRO 17
0G6 CD CD C 0 1 N N N N N N 20.254 11.279 16.671 2.520 0.897 1.775 CD PRO 18
0G6 N2 N2 N 0 1 N N N N N N 16.752 8.307 15.661 -1.949 0.692 0.618 N AR7 19
0G6 CA2 CA2 C 0 1 N N S N N N 15.380 8.254 15.186 -2.851 1.171 -0.432 CA AR7 20
0G6 C2 C2 C 0 1 N N S N N N 14.428 7.868 16.387 -2.857 2.701 -0.440 C AR7 21
0G6 O2 O2 O 0 1 N N N N N N 13.100 8.197 15.985 -3.736 3.170 -1.464 O AR7 22
0G6 CB2 CB2 C 0 1 N N N N N N 15.288 7.248 14.038 -4.266 0.657 -0.163 CB AR7 23
0G6 CG2 CG2 C 0 1 N N N N N N 16.004 7.709 12.786 -4.286 -0.868 -0.279 CG AR7 24
0G6 CD3 CD3 C 0 1 N N N N N N 16.131 6.600 11.759 -5.701 -1.382 -0.010 CD AR7 25
0G6 NE NE N 0 1 N N N N N N 16.808 7.063 10.547 -5.720 -2.843 -0.121 NE AR7 26
0G6 CZ1 CZ1 C 0 1 N N N N N N 17.047 6.303 9.480 -6.885 -3.530 0.080 CZ AR7 27
0G6 NH1 NH1 N 0 1 N N N N N N 16.667 5.031 9.456 -8.004 -2.870 0.376 NH1 AR7 28
0G6 NH2 NH2 N 1 1 N N N N N N 17.675 6.818 8.433 -6.902 -4.858 -0.021 NH2 AR7 29
0G6 C3 C3 C 0 1 N N N N N N 14.725 8.566 17.783 -1.441 3.216 -0.709 C1 0QE 30
0G6 CL CL CL 0 0 N Y N N N N 15.741 7.944 18.694 -1.418 5.013 -0.572 CL 0QE 31
0G6 H H H 0 1 N N N N N N 21.181 12.543 12.271 4.626 -1.039 -2.237 H DPN 32
0G6 H2 H2 H 0 1 N N N N N N 20.352 11.183 11.915 3.337 -2.066 -2.016 H2 DPN 33
0G6 HA HA H 0 1 N N N N N N 21.236 11.996 14.609 3.917 0.360 -0.443 HA DPN 34
0G6 HB2 HB2 H 0 1 N N N N N N 22.599 9.831 14.358 4.202 -1.291 1.429 HB2 DPN 35
0G6 HB3 HB3 H 0 1 N N N N N N 22.248 9.949 12.600 4.056 -2.610 0.243 HB3 DPN 36
0G6 HD1 HD1 H 0 1 N N N N N N 23.341 12.325 15.304 6.152 0.156 1.444 HD1 DPN 37
0G6 HD2 HD2 H 0 1 N N N N N N 23.993 10.783 11.378 5.803 -3.011 -1.391 HD2 DPN 38
0G6 HE1 HE1 H 0 1 N N N N N N 25.265 13.842 15.030 8.542 0.380 0.899 HE1 DPN 39
0G6 HE2 HE2 H 0 1 N N N N N N 25.918 12.296 11.094 8.194 -2.787 -1.936 HE2 DPN 40
0G6 HZ HZ H 0 1 N N N N N N 26.557 13.830 12.922 9.563 -1.088 -0.794 HZ DPN 41
0G6 HA1 HA1 H 0 1 N N N N N N 19.200 8.301 16.126 -0.013 -0.918 1.779 HA PRO 42
0G6 HB21 HB21 H 0 0 N N N N N N 17.982 9.464 18.297 -0.622 1.661 2.631 HB2 PRO 43
0G6 HB31 HB31 H 0 0 N N N N N N 19.719 9.008 18.273 0.379 0.516 3.584 HB3 PRO 44
0G6 HG2 HG2 H 0 1 N N N N N N 18.437 11.712 17.755 1.314 2.729 1.671 HG2 PRO 45
0G6 HG3 HG3 H 0 1 N N N N N N 19.846 11.304 18.792 1.927 2.341 3.313 HG3 PRO 46
0G6 HD21 HD21 H 0 0 N N N N N N 21.300 11.088 16.953 3.000 0.320 2.564 HD2 PRO 47
0G6 HD3 HD3 H 0 1 N N N N N N 20.162 12.299 16.269 3.268 1.400 1.162 HD3 PRO 48
0G6 H1 H1 H 0 1 N N N N N N 17.214 7.453 15.901 -2.301 0.464 1.493 H AR7 49
0G6 HA2 HA2 H 0 1 N N N N N N 15.077 9.244 14.814 -2.509 0.805 -1.400 HA AR7 50
0G6 HB22 HB22 H 0 0 N N N N N N 15.735 6.299 14.368 -4.574 0.949 0.841 HB2 AR7 51
0G6 HB32 HB32 H 0 0 N N N N N N 14.227 7.089 13.796 -4.953 1.086 -0.893 HB3 AR7 52
0G6 HG21 HG21 H 0 0 N N N N N N 15.439 8.541 12.341 -3.978 -1.160 -1.283 HG2 AR7 53
0G6 HG31 HG31 H 0 0 N N N N N N 17.011 8.055 13.061 -3.599 -1.297 0.451 HG3 AR7 54
0G6 HD22 HD22 H 0 0 N N N N N N 16.709 5.773 12.197 -6.009 -1.090 0.994 HD2 AR7 55
0G6 HD31 HD31 H 0 0 N N N N N N 15.125 6.244 11.492 -6.388 -0.954 -0.740 HD3 AR7 56
0G6 HE HE H 0 1 N N N N N N 17.112 8.015 10.518 -4.905 -3.323 -0.337 HE AR7 57
0G6 HH11 HH11 H 0 0 N N N N N N 16.855 4.468 8.651 -7.992 -1.903 0.450 HH11 AR7 58
0G6 HH12 HH12 H 0 0 N N N N N N 16.193 4.636 10.243 -8.831 -3.357 0.519 HH12 AR7 59
0G6 HH21 HH21 H 0 0 N N N N N N 17.860 6.249 7.631 -6.088 -5.338 -0.237 HH21 AR7 60
0G6 HH22 HH22 H 0 0 N N N N N N 17.964 7.775 8.444 -7.729 -5.345 0.121 HH22 AR7 61
0G6 H11 H11 H 0 1 N N N N N N 15.066 9.590 17.568 -0.754 2.787 0.021 H 0QE 62
0G6 H21 H21 H 0 1 N N N N N N 13.774 8.604 18.335 -1.133 2.924 -1.713 HA 0QE 63
0G6 H33 H33 H 0 1 N N N N N N 14.508 6.781 16.538 -3.198 3.068 0.528 H33 AR7 64
0G6 H34 H34 H 0 1 N N N N N N 12.494 7.979 16.683 -4.653 2.881 -1.357 H34 AR7 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0G6 N CA SING N N 1
0G6 N H SING N N 2
0G6 N H2 SING N N 3
0G6 CA C SING N N 4
0G6 CA CB SING N N 5
0G6 CA HA SING N N 6
0G6 C O DOUB N N 7
0G6 C N1 SING N N 8
0G6 CB CG SING N N 9
0G6 CB HB2 SING N N 10
0G6 CB HB3 SING N N 11
0G6 CG CD1 DOUB Y N 12
0G6 CG CD2 SING Y N 13
0G6 CD1 CE1 SING Y N 14
0G6 CD1 HD1 SING N N 15
0G6 CD2 CE2 DOUB Y N 16
0G6 CD2 HD2 SING N N 17
0G6 CE1 CZ DOUB Y N 18
0G6 CE1 HE1 SING N N 19
0G6 CE2 CZ SING Y N 20
0G6 CE2 HE2 SING N N 21
0G6 CZ HZ SING N N 22
0G6 N1 CA1 SING N N 23
0G6 N1 CD SING N N 24
0G6 CA1 C1 SING N N 25
0G6 CA1 CB1 SING N N 26
0G6 CA1 HA1 SING N N 27
0G6 C1 O1 DOUB N N 28
0G6 C1 N2 SING N N 29
0G6 CB1 CG1 SING N N 30
0G6 CB1 HB21 SING N N 31
0G6 CB1 HB31 SING N N 32
0G6 CG1 CD SING N N 33
0G6 CG1 HG2 SING N N 34
0G6 CG1 HG3 SING N N 35
0G6 CD HD21 SING N N 36
0G6 CD HD3 SING N N 37
0G6 N2 CA2 SING N N 38
0G6 N2 H1 SING N N 39
0G6 CA2 C2 SING N N 40
0G6 CA2 CB2 SING N N 41
0G6 CA2 HA2 SING N N 42
0G6 C2 O2 SING N N 43
0G6 C2 C3 SING N N 44
0G6 CB2 CG2 SING N N 45
0G6 CB2 HB22 SING N N 46
0G6 CB2 HB32 SING N N 47
0G6 CG2 CD3 SING N N 48
0G6 CG2 HG21 SING N N 49
0G6 CG2 HG31 SING N N 50
0G6 CD3 NE SING N N 51
0G6 CD3 HD22 SING N N 52
0G6 CD3 HD31 SING N N 53
0G6 NE CZ1 SING N N 54
0G6 NE HE SING N N 55
0G6 CZ1 NH1 SING N N 56
0G6 CZ1 NH2 DOUB N N 57
0G6 NH1 HH11 SING N N 58
0G6 NH1 HH12 SING N N 59
0G6 NH2 HH21 SING N N 60
0G6 NH2 HH22 SING N N 61
0G6 C3 H11 SING N N 62
0G6 C3 H21 SING N N 63
0G6 CL C3 SING N N 64
0G6 C2 H33 SING N N 65
0G6 O2 H34 SING N N 66
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0G6 SMILES ACDLabs 12.01 "O=C(NC(CCCNC(=[NH2+])\N)C(O)CCl)C2N(C(=O)C(N)Cc1ccccc1)CCC2"
0G6 InChI InChI 1.03 "InChI=1S/C21H33ClN6O3/c22-13-18(29)16(8-4-10-26-21(24)25)27-19(30)17-9-5-11-28(17)20(31)15(23)12-14-6-2-1-3-7-14/h1-3,6-7,15-18,29H,4-5,8-13,23H2,(H,27,30)(H4,24,25,26)/p+1/t15-,16+,17+,18-/m1/s1"
0G6 InChIKey InChI 1.03 DVFLYEYCMMLBTQ-VSZNYVQBSA-O
0G6 SMILES_CANONICAL CACTVS 3.370 "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(N)=[NH2+])[C@H](O)CCl"
0G6 SMILES CACTVS 3.370 "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCCNC(N)=[NH2+])[CH](O)CCl"
0G6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(=[NH2+])N)[C@@H](CCl)O)N"
0G6 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NC(CCCNC(=[NH2+])N)C(CCl)O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0G6 "SYSTEMATIC NAME" ACDLabs 12.01 "D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide"
0G6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4S,5S)-4-[[(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]pyrrolidin-2-yl]carbonylamino]-6-chloranyl-5-oxidanyl-hexyl]amino]methylidene]azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0G6 "Create component" 2008-09-14 RCSB
0G6 "Other modification" 2010-10-10 RCSB
0G6 "Modify synonyms" 2011-02-04 RCSB
0G6 "Modify descriptor" 2011-06-04 RCSB
0G6 "Modify synonyms" 2021-03-01 PDBE
0G6 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0G6
_pdbx_chem_comp_synonyms.name PPACK
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 0G6 HIS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C3 CE1 ? ?
2 0G6 HIS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C3 NE2 ? ?
3 0G6 SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 OG ? ?
4 0G6 THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 OG1 ? ?
#