data_0GJ
#
_chem_comp.id 0GJ
_chem_comp.name "L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H28 Cl N6 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2008-10-08
_chem_comp.pdbx_modified_date 2025-01-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 395.862
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0GJ
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1A5I
_chem_comp.pdbx_subcomponent_list "GLU GLY AR7 0QE"
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0GJ N N N 0 1 N N N N N N 33.668 45.866 41.170 5.637 0.188 2.081 N GLU 1
0GJ CA CA C 0 1 N N S N N N 33.265 44.911 42.247 4.659 0.157 0.986 CA GLU 2
0GJ C C C 0 1 N N N N N N 34.460 43.988 42.518 3.267 0.070 1.558 C GLU 3
0GJ O O O 0 1 N N N N N N 35.052 43.476 41.572 3.102 -0.322 2.694 O GLU 4
0GJ CB CB C 0 1 N N N N N N 32.082 44.061 41.768 4.923 -1.062 0.101 CB GLU 5
0GJ CG CG C 0 1 N N N N N N 31.101 44.797 40.860 6.286 -0.913 -0.579 CG GLU 6
0GJ CD CD C 0 1 N N N N N N 30.481 43.903 39.783 6.547 -2.114 -1.451 CD GLU 7
0GJ OE1 OE1 O 0 1 N N N N N N 30.161 42.721 40.076 5.726 -2.998 -1.522 OE1 GLU 8
0GJ OE2 OE2 O 0 1 N N N N N N 30.312 44.394 38.639 7.690 -2.201 -2.149 OE2 GLU 9
0GJ N1 N1 N 0 1 N N N N N N 34.851 43.824 43.783 2.206 0.427 0.808 N GLY 10
0GJ CA1 CA1 C 0 1 N N N N N N 35.956 42.938 44.101 0.854 0.342 1.364 CA GLY 11
0GJ C1 C1 C 0 1 N N N N N N 35.522 41.519 43.780 -0.144 0.796 0.330 C GLY 12
0GJ O1 O1 O 0 1 N N N N N N 34.332 41.275 43.636 0.237 1.154 -0.765 O GLY 13
0GJ N2 N2 N 0 1 N N N N N N 36.471 40.606 43.598 -1.460 0.803 0.620 N AR7 14
0GJ CA2 CA2 C 0 1 N N S N N N 36.159 39.206 43.293 -2.430 1.243 -0.385 CA AR7 15
0GJ C2 C2 C 0 1 N N S N N N 36.851 38.447 44.388 -2.560 2.767 -0.335 CF AR7 16
0GJ O2 O2 O 0 1 N N N N N N 36.448 37.108 44.124 -3.507 3.197 -1.316 O AR7 17
0GJ CB1 CB1 C 0 1 N N N N N N 36.760 38.773 41.943 -3.790 0.605 -0.096 CB AR7 18
0GJ CG1 CG1 C 0 1 N N N N N N 36.165 39.465 40.730 -3.689 -0.912 -0.269 CG AR7 19
0GJ CD1 CD1 C 0 1 N N N N N N 37.165 39.564 39.612 -5.049 -1.550 0.020 CD AR7 20
0GJ NE NE N 0 1 N N N N N N 36.673 40.345 38.474 -4.952 -3.002 -0.145 NE AR7 21
0GJ CZ CZ C 0 1 N N N N N N 37.300 40.414 37.299 -6.052 -3.789 0.063 CZ AR7 22
0GJ NH1 NH1 N 0 1 N N N N N N 38.447 39.767 37.105 -7.210 -3.235 0.415 NH1 AR7 23
0GJ NH2 NH2 N 1 1 N N N N N N 36.738 41.038 36.280 -5.964 -5.109 -0.088 NH2 AR7 24
0GJ C3 C3 C 0 1 N N N N N N 36.510 39.013 45.772 -1.200 3.405 -0.624 C1 0QE 25
0GJ CL CL CL 0 0 N Y N N N N 37.340 40.046 46.460 -1.319 5.193 -0.421 CL 0QE 26
0GJ H H H 0 1 N N N N N N 32.907 46.484 40.970 5.525 1.018 2.644 H GLU 27
0GJ H2 H2 H 0 1 N N N N N N 34.458 46.398 41.475 5.572 -0.644 2.648 H2 GLU 28
0GJ HA HA H 0 1 N N N N N N 32.971 45.459 43.154 4.751 1.065 0.391 HA GLU 29
0GJ HB2 HB2 H 0 1 N N N N N N 32.487 43.207 41.205 4.919 -1.964 0.713 HB2 GLU 30
0GJ HB3 HB3 H 0 1 N N N N N N 31.529 43.722 42.657 4.145 -1.135 -0.659 HB3 GLU 31
0GJ HG2 HG2 H 0 1 N N N N N N 30.288 45.196 41.485 6.290 -0.011 -1.191 HG2 GLU 32
0GJ HG3 HG3 H 0 1 N N N N N N 31.643 45.613 40.359 7.064 -0.840 0.181 HG3 GLU 33
0GJ HE2 HE2 H 0 1 N N N N N N 29.920 43.743 38.069 7.812 -2.990 -2.695 HE2 GLU 34
0GJ H1 H1 H 0 1 N N N N N N 34.380 44.314 44.516 2.339 0.740 -0.101 H GLY 35
0GJ HA2 HA2 H 0 1 N N N N N N 36.838 43.207 43.502 0.641 -0.689 1.647 HA2 GLY 36
0GJ HA3 HA3 H 0 1 N N N N N N 36.211 43.022 45.168 0.782 0.982 2.243 HA3 GLY 37
0GJ H3 H3 H 0 1 N N N N N N 37.429 40.883 43.671 -1.765 0.516 1.495 HN2 AR7 38
0GJ HA1 HA1 H 0 1 N N N N N N 35.074 39.035 43.231 -2.090 0.940 -1.376 HA AR7 39
0GJ HB21 HB21 H 0 0 N N N N N N 37.835 39.003 41.966 -4.089 0.835 0.927 HB1 AR7 40
0GJ HB31 HB31 H 0 0 N N N N N N 36.587 37.692 41.831 -4.532 1.001 -0.789 HB2 AR7 41
0GJ HG21 HG21 H 0 0 N N N N N N 35.297 38.886 40.381 -3.390 -1.142 -1.291 HG1 AR7 42
0GJ HG31 HG31 H 0 0 N N N N N N 35.852 40.479 41.018 -2.947 -1.308 0.425 HG2 AR7 43
0GJ HD2 HD2 H 0 1 N N N N N N 38.071 40.052 40.000 -5.348 -1.320 1.043 HD1 AR7 44
0GJ HD3 HD3 H 0 1 N N N N N N 37.393 38.547 39.261 -5.791 -1.154 -0.673 HD2 AR7 45
0GJ HE HE H 0 1 N N N N N N 35.820 40.855 38.585 -4.108 -3.406 -0.402 HNE AR7 46
0GJ HH11 HH11 H 0 0 N N N N N N 38.869 39.759 36.199 -7.274 -2.273 0.525 HN11 AR7 47
0GJ HH12 HH12 H 0 0 N N N N N N 38.886 39.289 37.866 -7.990 -3.793 0.562 HN12 AR7 48
0GJ HH21 HH21 H 0 0 N N N N N N 37.174 41.020 35.380 -5.120 -5.513 -0.345 HN21 AR7 49
0GJ HH22 HH22 H 0 0 N N N N N N 35.876 41.529 36.408 -6.743 -5.668 0.060 HN22 AR7 50
0GJ H27 H27 H 0 1 N N N N N N 37.948 38.522 44.402 -2.901 3.070 0.655 HF AR7 51
0GJ H28 H28 H 0 1 N N N N N N 36.835 36.527 44.769 -4.393 2.830 -1.194 H1 AR7 52
0GJ H11 H11 H 0 1 N N N N N N 35.517 39.472 45.658 -0.458 3.009 0.069 H 0QE 53
0GJ H21 H21 H 0 1 N N N N N N 36.515 38.144 46.447 -0.901 3.175 -1.647 HA 0QE 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0GJ N CA SING N N 1
0GJ N H SING N N 2
0GJ N H2 SING N N 3
0GJ CA C SING N N 4
0GJ CA CB SING N N 5
0GJ CA HA SING N N 6
0GJ C O DOUB N N 7
0GJ C N1 SING N N 8
0GJ CB CG SING N N 9
0GJ CB HB2 SING N N 10
0GJ CB HB3 SING N N 11
0GJ CG CD SING N N 12
0GJ CG HG2 SING N N 13
0GJ CG HG3 SING N N 14
0GJ CD OE1 DOUB N N 15
0GJ CD OE2 SING N N 16
0GJ OE2 HE2 SING N N 17
0GJ N1 CA1 SING N N 18
0GJ N1 H1 SING N N 19
0GJ CA1 C1 SING N N 20
0GJ CA1 HA2 SING N N 21
0GJ CA1 HA3 SING N N 22
0GJ C1 O1 DOUB N N 23
0GJ C1 N2 SING N N 24
0GJ N2 CA2 SING N N 25
0GJ N2 H3 SING N N 26
0GJ CA2 C2 SING N N 27
0GJ CA2 CB1 SING N N 28
0GJ CA2 HA1 SING N N 29
0GJ C2 O2 SING N N 30
0GJ C2 C3 SING N N 31
0GJ CB1 CG1 SING N N 32
0GJ CB1 HB21 SING N N 33
0GJ CB1 HB31 SING N N 34
0GJ CG1 CD1 SING N N 35
0GJ CG1 HG21 SING N N 36
0GJ CG1 HG31 SING N N 37
0GJ CD1 NE SING N N 38
0GJ CD1 HD2 SING N N 39
0GJ CD1 HD3 SING N N 40
0GJ NE CZ SING N N 41
0GJ NE HE SING N N 42
0GJ CZ NH1 SING N N 43
0GJ CZ NH2 DOUB N N 44
0GJ NH1 HH11 SING N N 45
0GJ NH1 HH12 SING N N 46
0GJ NH2 HH21 SING N N 47
0GJ NH2 HH22 SING N N 48
0GJ C3 H11 SING N N 49
0GJ C3 H21 SING N N 50
0GJ CL C3 SING N N 51
0GJ C2 H27 SING N N 52
0GJ O2 H28 SING N N 53
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0GJ SMILES ACDLabs 12.01 "O=C(NC(CCCNC(=[NH2+])\N)C(O)CCl)CNC(=O)C(N)CCC(=O)O"
0GJ SMILES_CANONICAL CACTVS 3.370 "N[C@@H](CCC(O)=O)C(=O)NCC(=O)N[C@@H](CCCNC(N)=[NH2+])[C@H](O)CCl"
0GJ SMILES CACTVS 3.370 "N[CH](CCC(O)=O)C(=O)NCC(=O)N[CH](CCCNC(N)=[NH2+])[CH](O)CCl"
0GJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C(C[C@@H]([C@@H](CCl)O)NC(=O)CNC(=O)[C@H](CCC(=O)O)N)CNC(=[NH2+])N"
0GJ SMILES "OpenEye OEToolkits" 1.7.0 "C(CC(C(CCl)O)NC(=O)CNC(=O)C(CCC(=O)O)N)CNC(=[NH2+])N"
0GJ InChI InChI 1.03 "InChI=1S/C14H27ClN6O5/c15-6-10(22)9(2-1-5-19-14(17)18)21-11(23)7-20-13(26)8(16)3-4-12(24)25/h8-10,22H,1-7,16H2,(H,20,26)(H,21,23)(H,24,25)(H4,17,18,19)/p+1/t8-,9-,10+/m0/s1"
0GJ InChIKey InChI 1.03 XELWNHKFCNMWQO-LPEHRKFASA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0GJ "SYSTEMATIC NAME" ACDLabs 12.01 "L-alpha-glutamyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]glycinamide"
0GJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[[(4S,5S)-4-[2-[[(2S)-2-azanyl-5-hydroxy-5-oxo-pentanoyl]amino]ethanoylamino]-6-chloro-5-hydroxy-hexyl]amino]methylidene]azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0GJ "Create component" 2008-10-08 RCSB
0GJ "Other modification" 2010-09-27 RCSB
0GJ "Modify descriptor" 2011-06-04 RCSB
0GJ "Modify PCM" 2024-09-27 PDBE
0GJ "Modify PCM" 2025-01-30 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 0GJ HIS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C3 NE2 ? ?
2 0GJ SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 OG ? ?
3 0GJ GLY None "Covalent chemical modification" "Amino-acid side chain" "Any position" N2 C ? ?
#