data_0IE
#
_chem_comp.id 0IE
_chem_comp.name Siphonaxanthin
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H56 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-21
_chem_comp.pdbx_modified_date 2022-11-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 600.870
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0IE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7WLM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0IE O1 O1 O 0 1 N N N 88.930 110.895 113.721 -8.698 -0.949 0.047 O1 0IE 1
0IE C7 C1 C 0 1 N N N 92.774 111.922 108.852 -2.619 0.721 -0.270 C7 0IE 2
0IE C6 C2 C 0 1 N N N 91.991 111.777 110.067 -3.855 0.073 -0.226 C6 0IE 3
0IE C5 C3 C 0 1 N N N 91.005 110.905 110.292 -5.023 0.805 -0.323 C5 0IE 4
0IE C4 C4 C 0 1 N N N 90.301 110.827 111.530 -6.258 0.157 -0.278 C4 0IE 5
0IE C3 C5 C 0 1 N N N 89.298 109.946 111.765 -7.426 0.896 -0.273 C3 0IE 6
0IE C2 C6 C 0 1 N N N 88.670 109.881 113.099 -8.655 0.258 -0.100 C2 0IE 7
0IE C10 C7 C 0 1 N N N 95.604 114.077 107.789 0.951 -0.092 -0.110 C10 0IE 8
0IE C11 C8 C 0 1 N N N 96.516 114.328 106.725 2.189 0.557 -0.155 C11 0IE 9
0IE C12 C9 C 0 1 N N N 97.486 115.271 106.673 3.354 -0.173 -0.052 C12 0IE 10
0IE C13 C10 C 0 1 N N N 98.320 115.359 105.487 4.594 0.477 -0.097 C13 0IE 11
0IE C14 C11 C 0 1 N N N 99.302 116.235 105.259 5.748 -0.246 0.004 C14 0IE 12
0IE C15 C12 C 0 1 N N N 100.078 116.245 104.064 6.992 0.407 -0.041 C15 0IE 13
0IE C16 C13 C 0 1 N N N 100.581 117.319 103.411 8.141 -0.313 0.060 C16 0IE 14
0IE C17 C14 C 0 1 N N N 101.401 117.105 102.231 9.396 0.345 0.015 C17 0IE 15
0IE C18 C15 C 0 1 N N N 102.000 118.033 101.509 10.526 -0.363 0.114 C18 0IE 16
0IE C19 C16 C 0 1 N N R 102.842 117.737 100.299 11.859 0.337 0.066 C19 0IE 17
0IE C20 C17 C 0 1 N N N 88.771 108.970 110.750 -7.373 2.391 -0.456 C20 0IE 18
0IE C21 C18 C 0 1 N N N 92.475 111.000 107.705 -2.559 2.219 -0.424 C21 0IE 19
0IE C22 C19 C 0 1 N N N 97.741 116.244 107.789 3.294 -1.670 0.108 C22 0IE 20
0IE C23 C20 C 0 1 N N N 100.361 118.733 103.870 8.081 -1.810 0.220 C23 0IE 21
0IE C24 C21 C 0 1 N N N 104.347 117.704 100.620 12.669 -0.196 -1.118 C24 0IE 22
0IE C25 C22 C 0 1 N N N 105.140 117.697 99.298 14.106 0.329 -0.999 C25 0IE 23
0IE C26 C23 C 0 1 N N R 104.865 118.901 98.422 14.758 -0.318 0.225 C26 0IE 24
0IE C27 C24 C 0 1 N N N 103.407 119.205 98.362 13.859 -0.190 1.419 C27 0IE 25
0IE C28 C25 C 0 1 N N N 102.490 118.712 99.186 12.597 0.091 1.350 C28 0IE 26
0IE C30 C26 C 0 1 N N N 87.832 108.764 113.671 -9.929 1.063 -0.094 C30 0IE 27
0IE C31 C27 C 0 1 N N N 87.493 108.790 115.142 -11.104 0.143 0.109 C31 0IE 28
0IE C32 C28 C 0 1 N N N 88.407 107.938 116.032 -11.682 -0.538 -1.098 C32 0IE 29
0IE C33 C29 C 0 1 N N N 87.879 107.869 117.477 -13.081 -1.070 -0.783 C33 0IE 30
0IE C34 C30 C 0 1 N N R 87.272 109.179 117.950 -13.016 -1.862 0.529 C34 0IE 31
0IE C35 C31 C 0 1 N N N 86.103 109.559 117.062 -12.720 -0.885 1.670 C35 0IE 32
0IE C36 C32 C 0 1 N N N 86.466 109.515 115.600 -11.550 -0.016 1.314 C36 0IE 33
0IE C37 C33 C 0 1 N N N 85.571 110.355 114.733 -10.854 0.723 2.428 C37 0IE 34
0IE C38 C34 C 0 1 N N N 88.495 106.508 115.486 -11.771 0.464 -2.251 C38 0IE 35
0IE C39 C35 C 0 1 N N N 89.817 108.538 116.071 -10.776 -1.702 -1.505 C39 0IE 36
0IE C41 C36 C 0 1 N N N 101.032 119.053 99.083 11.820 0.176 2.638 C41 0IE 37
0IE C43 C37 C 0 1 N N N 104.741 118.921 101.467 12.673 -1.726 -1.091 C43 0IE 38
0IE C44 C38 C 0 1 N N N 104.690 116.441 101.418 12.049 0.294 -2.428 C44 0IE 39
0IE C8 C39 C 0 1 N N N 93.753 112.857 108.809 -1.452 -0.010 -0.168 C8 0IE 40
0IE C9 C40 C 0 1 N N N 94.662 113.115 107.744 -0.215 0.638 -0.213 C9 0IE 41
0IE O29 O2 O 0 1 N N N 87.522 109.383 110.232 -7.846 3.033 0.731 O29 0IE 42
0IE O40 O3 O 0 1 N N N 86.831 109.042 119.302 -14.268 -2.509 0.763 O40 0IE 43
0IE O42 O4 O 0 1 N N N 105.393 118.671 97.109 16.001 0.332 0.498 O42 0IE 44
0IE H1 H1 H 0 1 N N N 92.233 112.448 110.878 -3.898 -1.001 -0.116 H1 0IE 45
0IE H2 H2 H 0 1 N N N 90.727 110.227 109.499 -4.980 1.878 -0.433 H2 0IE 46
0IE H3 H3 H 0 1 N N N 90.582 111.506 112.322 -6.301 -0.922 -0.248 H3 0IE 47
0IE H4 H4 H 0 1 N N N 95.671 114.688 108.677 0.908 -1.165 0.005 H4 0IE 48
0IE H5 H5 H 0 1 N N N 96.423 113.691 105.858 2.232 1.630 -0.269 H5 0IE 49
0IE H6 H6 H 0 1 N N N 98.125 114.639 104.706 4.637 1.550 -0.212 H6 0IE 50
0IE H7 H7 H 0 1 N N N 99.519 116.972 106.018 5.705 -1.319 0.119 H7 0IE 51
0IE H8 H8 H 0 1 N N N 100.290 115.280 103.627 7.035 1.480 -0.155 H8 0IE 52
0IE H9 H9 H 0 1 N N N 101.534 116.082 101.912 9.439 1.418 -0.100 H9 0IE 53
0IE H10 H10 H 0 1 N N N 101.878 119.065 101.804 10.482 -1.436 0.229 H10 0IE 54
0IE H11 H11 H 0 1 N N N 102.568 116.731 99.947 11.701 1.408 -0.057 H11 0IE 55
0IE H12 H12 H 0 1 N N N 88.652 107.987 111.228 -6.345 2.697 -0.649 H12 0IE 56
0IE H13 H13 H 0 1 N N N 89.492 108.890 109.923 -8.002 2.677 -1.298 H13 0IE 57
0IE H14 H14 H 0 1 N N N 91.643 110.334 107.977 -2.563 2.686 0.561 H14 0IE 58
0IE H15 H15 H 0 1 N N N 92.197 111.593 106.821 -1.646 2.494 -0.953 H15 0IE 59
0IE H16 H16 H 0 1 N N N 93.367 110.398 107.477 -3.424 2.561 -0.992 H16 0IE 60
0IE H17 H17 H 0 1 N N N 97.035 116.053 108.611 3.300 -2.141 -0.875 H17 0IE 61
0IE H18 H18 H 0 1 N N N 98.771 116.121 108.154 4.158 -2.010 0.679 H18 0IE 62
0IE H19 H19 H 0 1 N N N 97.604 117.271 107.419 2.380 -1.943 0.635 H19 0IE 63
0IE H20 H20 H 0 1 N N N 99.725 118.733 104.768 8.087 -2.281 -0.763 H20 0IE 64
0IE H21 H21 H 0 1 N N N 101.330 119.196 104.107 8.945 -2.150 0.791 H21 0IE 65
0IE H22 H22 H 0 1 N N N 99.867 119.305 103.071 7.167 -2.083 0.748 H22 0IE 66
0IE H23 H23 H 0 1 N N N 104.873 116.790 98.737 14.667 0.067 -1.895 H23 0IE 67
0IE H24 H24 H 0 1 N N N 106.214 117.678 99.536 14.091 1.413 -0.879 H24 0IE 68
0IE H25 H25 H 0 1 N N N 105.378 119.767 98.866 14.940 -1.374 0.021 H25 0IE 69
0IE H26 H26 H 0 1 N N N 103.070 119.879 97.588 14.291 -0.342 2.397 H26 0IE 70
0IE H27 H27 H 0 1 N N N 86.880 108.759 113.120 -9.894 1.793 0.715 H27 0IE 71
0IE H28 H28 H 0 1 N N N 88.371 107.825 113.480 -10.034 1.583 -1.047 H28 0IE 72
0IE H29 H29 H 0 1 N N N 87.109 107.086 117.532 -13.775 -0.236 -0.673 H29 0IE 73
0IE H30 H30 H 0 1 N N N 88.715 107.609 118.144 -13.414 -1.724 -1.589 H30 0IE 74
0IE H31 H31 H 0 1 N N N 88.037 109.967 117.883 -12.223 -2.608 0.468 H31 0IE 75
0IE H32 H32 H 0 1 N N N 85.780 110.579 117.317 -13.597 -0.262 1.847 H32 0IE 76
0IE H33 H33 H 0 1 N N N 85.276 108.857 117.244 -12.486 -1.446 2.574 H33 0IE 77
0IE H34 H34 H 0 1 N N N 84.810 110.845 115.358 -11.322 1.698 2.566 H34 0IE 78
0IE H35 H35 H 0 1 N N N 86.172 111.120 114.219 -10.933 0.148 3.350 H35 0IE 79
0IE H36 H36 H 0 1 N N N 85.077 109.715 113.988 -9.803 0.858 2.173 H36 0IE 80
0IE H37 H37 H 0 1 N N N 89.153 105.908 116.132 -10.774 0.837 -2.485 H37 0IE 81
0IE H38 H38 H 0 1 N N N 87.491 106.060 115.468 -12.190 -0.029 -3.128 H38 0IE 82
0IE H39 H39 H 0 1 N N N 88.905 106.530 114.465 -12.412 1.296 -1.961 H39 0IE 83
0IE H40 H40 H 0 1 N N N 90.462 107.919 116.712 -10.708 -2.414 -0.683 H40 0IE 84
0IE H41 H41 H 0 1 N N N 90.231 108.567 115.052 -11.194 -2.197 -2.382 H41 0IE 85
0IE H42 H42 H 0 1 N N N 89.770 109.559 116.477 -9.782 -1.323 -1.742 H42 0IE 86
0IE H43 H43 H 0 1 N N N 100.475 118.525 99.871 12.486 -0.025 3.478 H43 0IE 87
0IE H44 H44 H 0 1 N N N 100.900 120.138 99.205 11.396 1.175 2.742 H44 0IE 88
0IE H45 H45 H 0 1 N N N 100.653 118.746 98.097 11.017 -0.561 2.628 H45 0IE 89
0IE H46 H46 H 0 1 N N N 104.169 118.915 102.407 11.649 -2.093 -1.159 H46 0IE 90
0IE H47 H47 H 0 1 N N N 105.817 118.878 101.692 13.250 -2.102 -1.936 H47 0IE 91
0IE H48 H48 H 0 1 N N N 104.520 119.843 100.909 13.122 -2.072 -0.161 H48 0IE 92
0IE H49 H49 H 0 1 N N N 104.127 116.440 102.363 12.055 1.384 -2.447 H49 0IE 93
0IE H50 H50 H 0 1 N N N 104.421 115.551 100.830 12.628 -0.087 -3.269 H50 0IE 94
0IE H51 H51 H 0 1 N N N 105.769 116.425 101.634 11.023 -0.065 -2.500 H51 0IE 95
0IE H52 H52 H 0 1 N N N 93.856 113.480 109.685 -1.495 -1.083 -0.053 H52 0IE 96
0IE H53 H53 H 0 1 N N N 94.593 112.508 106.854 -0.172 1.711 -0.327 H53 0IE 97
0IE H54 H54 H 0 1 N N N 87.217 108.747 109.595 -7.839 3.999 0.685 H54 0IE 98
0IE H55 H55 H 0 1 N N N 87.567 108.804 119.853 -14.296 -3.029 1.579 H55 0IE 99
0IE H56 H56 H 0 1 N N N 106.322 118.479 97.170 16.472 -0.027 1.263 H56 0IE 100
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0IE O42 C26 SING N N 1
0IE C27 C26 SING N N 2
0IE C27 C28 DOUB N N 3
0IE C26 C25 SING N N 4
0IE C41 C28 SING N N 5
0IE C28 C19 SING N N 6
0IE C25 C24 SING N N 7
0IE C19 C24 SING N N 8
0IE C19 C18 SING N N 9
0IE C24 C44 SING N N 10
0IE C24 C43 SING N N 11
0IE C18 C17 DOUB N E 12
0IE C17 C16 SING N N 13
0IE C16 C23 SING N N 14
0IE C16 C15 DOUB N E 15
0IE C15 C14 SING N N 16
0IE C14 C13 DOUB N E 17
0IE C13 C12 SING N N 18
0IE C12 C11 DOUB N E 19
0IE C12 C22 SING N N 20
0IE C11 C10 SING N N 21
0IE C21 C7 SING N N 22
0IE C9 C10 DOUB N E 23
0IE C9 C8 SING N N 24
0IE C8 C7 DOUB N E 25
0IE C7 C6 SING N N 26
0IE C6 C5 DOUB N E 27
0IE O29 C20 SING N N 28
0IE C5 C4 SING N N 29
0IE C20 C3 SING N N 30
0IE C4 C3 DOUB N E 31
0IE C3 C2 SING N N 32
0IE C2 C30 SING N N 33
0IE C2 O1 DOUB N N 34
0IE C30 C31 SING N N 35
0IE C37 C36 SING N N 36
0IE C31 C36 DOUB N N 37
0IE C31 C32 SING N N 38
0IE C38 C32 SING N N 39
0IE C36 C35 SING N N 40
0IE C32 C39 SING N N 41
0IE C32 C33 SING N N 42
0IE C35 C34 SING N N 43
0IE C33 C34 SING N N 44
0IE C34 O40 SING N N 45
0IE C6 H1 SING N N 46
0IE C5 H2 SING N N 47
0IE C4 H3 SING N N 48
0IE C10 H4 SING N N 49
0IE C11 H5 SING N N 50
0IE C13 H6 SING N N 51
0IE C14 H7 SING N N 52
0IE C15 H8 SING N N 53
0IE C17 H9 SING N N 54
0IE C18 H10 SING N N 55
0IE C19 H11 SING N N 56
0IE C20 H12 SING N N 57
0IE C20 H13 SING N N 58
0IE C21 H14 SING N N 59
0IE C21 H15 SING N N 60
0IE C21 H16 SING N N 61
0IE C22 H17 SING N N 62
0IE C22 H18 SING N N 63
0IE C22 H19 SING N N 64
0IE C23 H20 SING N N 65
0IE C23 H21 SING N N 66
0IE C23 H22 SING N N 67
0IE C25 H23 SING N N 68
0IE C25 H24 SING N N 69
0IE C26 H25 SING N N 70
0IE C27 H26 SING N N 71
0IE C30 H27 SING N N 72
0IE C30 H28 SING N N 73
0IE C33 H29 SING N N 74
0IE C33 H30 SING N N 75
0IE C34 H31 SING N N 76
0IE C35 H32 SING N N 77
0IE C35 H33 SING N N 78
0IE C37 H34 SING N N 79
0IE C37 H35 SING N N 80
0IE C37 H36 SING N N 81
0IE C38 H37 SING N N 82
0IE C38 H38 SING N N 83
0IE C38 H39 SING N N 84
0IE C39 H40 SING N N 85
0IE C39 H41 SING N N 86
0IE C39 H42 SING N N 87
0IE C41 H43 SING N N 88
0IE C41 H44 SING N N 89
0IE C41 H45 SING N N 90
0IE C43 H46 SING N N 91
0IE C43 H47 SING N N 92
0IE C43 H48 SING N N 93
0IE C44 H49 SING N N 94
0IE C44 H50 SING N N 95
0IE C44 H51 SING N N 96
0IE C8 H52 SING N N 97
0IE C9 H53 SING N N 98
0IE O29 H54 SING N N 99
0IE O40 H55 SING N N 100
0IE O42 H56 SING N N 101
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0IE InChI InChI 1.03 "InChI=1S/C40H56O4/c1-28(16-12-17-30(3)20-21-36-31(4)22-34(42)25-39(36,6)7)14-10-11-15-29(2)18-13-19-33(27-41)38(44)24-37-32(5)23-35(43)26-40(37,8)9/h10-22,34-36,41-43H,23-27H2,1-9H3/b11-10+,16-12+,18-13+,21-20+,28-14+,29-15+,30-17+,33-19+/t34-,35+,36-/m0/s1"
0IE InChIKey InChI 1.03 SUCKEYMKNGZJHK-ZARIWKGHSA-N
0IE SMILES_CANONICAL CACTVS 3.385 "CC1=C(CC(=O)/C(CO)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/[C@H]2C(=C[C@H](O)CC2(C)C)C)C(C)(C)C[C@H](O)C1"
0IE SMILES CACTVS 3.385 "CC1=C(CC(=O)C(CO)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[CH]2C(=C[CH](O)CC2(C)C)C)C(C)(C)C[CH](O)C1"
0IE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(C[C@@H](C1)O)(C)C)CC(=O)/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/[C@H]2C(=C[C@@H](CC2(C)C)O)C)/C)/CO"
0IE SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CC(C1)O)(C)C)CC(=O)C(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC2C(=CC(CC2(C)C)O)C)C)CO"
#
_pdbx_chem_comp_identifier.comp_id 0IE
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3-(hydroxymethyl)-7,12,16-trimethyl-18-[(1~{R},4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]-1-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-2-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0IE "Create component" 2022-01-21 PDBJ
0IE "Initial release" 2022-11-23 RCSB
#