data_0IT
#
_chem_comp.id 0IT
_chem_comp.name "amino({(4S)-4-[({(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}acetyl)amino]-5-oxopentyl}amino)methaniminium"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H31 N6 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms CVS1578
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2008-12-11
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 467.562
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0IT
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BA8
_chem_comp.pdbx_subcomponent_list "PMS NVA GLY RGL"
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0IT C3 C14 C 0 1 N N N 18.505 -17.008 26.127 2.765 -1.127 0.000 C PMS 1
0IT S S1 S 0 1 N N N 17.819 -17.673 24.628 3.951 -0.065 -0.870 S PMS 2
0IT C11 C15 C 0 1 Y N N 19.726 -16.189 25.921 3.364 -2.495 0.196 C1 PMS 3
0IT C6 C20 C 0 1 Y N N 20.950 -16.713 25.592 3.178 -3.475 -0.762 C2 PMS 4
0IT C5 C19 C 0 1 Y N N 22.068 -15.884 25.395 3.731 -4.729 -0.584 C3 PMS 5
0IT C4 C18 C 0 1 Y N N 21.946 -14.517 25.536 4.464 -5.006 0.555 C4 PMS 6
0IT C31 C17 C 0 1 Y N N 20.716 -14.007 25.869 4.646 -4.029 1.515 C5 PMS 7
0IT C21 C16 C 0 1 Y N N 19.588 -14.803 26.063 4.096 -2.773 1.335 C6 PMS 8
0IT O2S O8 O 0 1 N N N 18.864 -18.333 23.923 4.126 -0.507 -2.209 O2S PMS 9
0IT O1S O7 O 0 1 N N N 16.590 -18.241 24.998 5.070 0.217 -0.040 O1S PMS 10
0IT N N1 N 0 1 N N N 17.436 -16.435 23.577 3.174 1.389 -1.017 N NVA 11
0IT CA C1 C 0 1 N N S 18.442 -15.757 22.852 2.842 2.167 0.180 CA NVA 12
0IT CB C2 C 0 1 N N N 19.033 -16.469 21.697 2.972 3.660 -0.131 CB NVA 13
0IT CG C3 C 0 1 N N N 19.995 -15.681 20.884 2.362 4.452 1.031 CG NVA 14
0IT CD C4 C 0 1 N N N 19.772 -14.161 20.801 0.853 4.208 1.051 CD NVA 15
0IT C C5 C 0 1 N N N 17.902 -14.337 22.445 1.436 1.854 0.604 C NVA 16
0IT O O1 O 0 1 N N N 16.883 -13.982 22.991 1.072 0.697 0.575 O NVA 17
0IT N1 N2 N 0 1 N N N 18.570 -13.721 21.509 0.567 2.779 1.011 N GLY 18
0IT CA1 C6 C 0 1 N N N 18.061 -12.381 21.159 -0.759 2.332 1.445 CA GLY 19
0IT C1 C7 C 0 1 N N N 16.765 -12.559 20.369 -1.694 2.312 0.263 C GLY 20
0IT O1 O3 O 0 1 N N N 16.508 -13.641 19.849 -1.293 2.640 -0.833 O GLY 21
0IT N2 N3 N 0 1 N N N 15.948 -11.522 20.404 -2.977 1.931 0.425 N RGL 22
0IT CA2 C8 C 0 1 N N S 14.643 -11.523 19.689 -3.886 1.912 -0.723 CA RGL 23
0IT C2 C9 C 0 1 N N N 14.765 -10.736 18.401 -4.471 3.286 -0.924 C RGL 24
0IT O2 O5 O 0 1 N N N 13.743 -10.293 17.847 -4.161 4.188 -0.183 O RGL 25
0IT CB1 C10 C 0 1 N N N 13.537 -10.975 20.549 -5.014 0.910 -0.465 CB RGL 26
0IT CG1 C11 C 0 1 N N N 13.119 -11.905 21.662 -4.432 -0.502 -0.386 CG RGL 27
0IT CD1 C12 C 0 1 N N N 12.169 -11.262 22.584 -5.559 -1.504 -0.127 CD RGL 28
0IT NE N4 N 0 1 N N N 11.604 -12.263 23.445 -5.003 -2.857 -0.051 NE RGL 29
0IT CZ C13 C 0 1 N N N 10.814 -12.052 24.460 -5.828 -3.924 0.175 CZ RGL 30
0IT NH1 N5 N 0 1 N N N 10.511 -10.769 24.793 -7.137 -3.734 0.326 NH1 RGL 31
0IT NH2 N6 N 1 1 N N N 10.195 -13.059 25.104 -5.322 -5.155 0.244 NH2 RGL 32
0IT H11 H32 H 0 1 N N N 18.768 -17.851 26.783 1.852 -1.211 -0.589 H2A PMS 33
0IT H2A H33 H 0 1 N N N 17.742 -16.369 26.595 2.531 -0.690 0.971 H1 PMS 34
0IT H6 H38 H 0 1 N N N 21.057 -17.782 25.482 2.602 -3.259 -1.650 H2 PMS 35
0IT H5 H37 H 0 1 N N N 23.022 -16.317 25.133 3.589 -5.493 -1.334 H3 PMS 36
0IT H4 H36 H 0 1 N N N 22.795 -13.866 25.388 4.894 -5.987 0.695 H4 PMS 37
0IT H3 H35 H 0 1 N N N 20.617 -12.938 25.986 5.219 -4.245 2.405 H5 PMS 38
0IT H21 H34 H 0 1 N N N 18.635 -14.363 26.316 4.239 -2.009 2.085 H6 PMS 39
0IT H H1 H 0 1 N N N 16.984 -15.737 24.132 2.939 1.727 -1.895 H NVA 40
0IT HA H3 H 0 1 N N N 19.298 -15.681 23.539 3.529 1.903 0.985 HA NVA 41
0IT HB2 H4 H 0 1 N N N 19.570 -17.345 22.088 4.025 3.921 -0.241 HB2 NVA 42
0IT HB3 H5 H 0 1 N N N 18.207 -16.768 21.035 2.438 3.890 -1.053 HB3 NVA 43
0IT HG2 H6 H 0 1 N N N 20.990 -15.835 21.327 2.799 4.117 1.972 HG2 NVA 44
0IT HG3 H7 H 0 1 N N N 19.939 -16.069 19.856 2.559 5.515 0.892 HG3 NVA 45
0IT HD1 H8 H 0 1 N N N 20.641 -13.659 21.250 0.431 4.634 1.962 HD1 NVA 46
0IT HD2 H9 H 0 1 N N N 19.670 -13.884 19.741 0.398 4.688 0.185 HD2 NVA 47
0IT HA2 H14 H 0 1 N N N 17.866 -11.802 22.074 -0.685 1.329 1.866 HA2 GLY 48
0IT HA3 H15 H 0 1 N N N 18.803 -11.845 20.548 -1.144 3.016 2.201 HA3 GLY 49
0IT HXT H31 H 0 1 N Y N 15.737 -10.560 17.964 -5.168 3.464 -1.729 HX RGL 50
0IT H2 H17 H 0 1 N N N 16.214 -10.712 20.927 -3.298 1.669 1.302 HN1 RGL 51
0IT HA1 H19 H 0 1 N N N 14.381 -12.565 19.452 -3.336 1.618 -1.617 HA RGL 52
0IT HB21 H20 H 0 0 N N N 13.889 -10.036 21.002 -5.507 1.154 0.476 HB1 RGL 53
0IT HB31 H21 H 0 0 N N N 12.662 -10.795 19.907 -5.737 0.960 -1.278 HB2 RGL 54
0IT HG21 H22 H 0 0 N N N 12.638 -12.790 21.220 -3.939 -0.746 -1.327 HG1 RGL 55
0IT HG31 H23 H 0 0 N N N 14.014 -12.202 22.228 -3.708 -0.552 0.428 HG2 RGL 56
0IT HD21 H24 H 0 0 N N N 12.694 -10.508 23.189 -6.053 -1.261 0.814 HD1 RGL 57
0IT HD31 H25 H 0 0 N N N 11.368 -10.774 22.009 -6.283 -1.454 -0.941 HD2 RGL 58
0IT HE H26 H 0 1 N N N 11.840 -13.214 23.246 -4.049 -2.996 -0.161 HE RGL 59
0IT HH11 H27 H 0 0 N N N 9.836 -10.584 25.508 -7.506 -2.838 0.275 HH11 RGL 60
0IT HH12 H28 H 0 0 N N N 10.963 -10.011 24.323 -7.722 -4.491 0.486 HH12 RGL 61
0IT HH21 H29 H 0 0 N N N 9.523 -12.858 25.816 -5.907 -5.911 0.404 HH21 RGL 62
0IT HH22 H30 H 0 0 N N N 10.408 -14.008 24.870 -4.368 -5.293 0.134 HH22 RGL 63
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0IT N CA SING N N 1
0IT N H SING N N 2
0IT CA CB SING N N 3
0IT CA C SING N N 4
0IT CA HA SING N N 5
0IT CB CG SING N N 6
0IT CB HB2 SING N N 7
0IT CB HB3 SING N N 8
0IT CG CD SING N N 9
0IT CG HG2 SING N N 10
0IT CG HG3 SING N N 11
0IT CD HD1 SING N N 12
0IT CD HD2 SING N N 13
0IT C O DOUB N N 14
0IT N1 CA1 SING N N 15
0IT CD N1 SING N N 16
0IT CA1 C1 SING N N 17
0IT CA1 HA2 SING N N 18
0IT CA1 HA3 SING N N 19
0IT C1 O1 DOUB N N 20
0IT N2 CA2 SING N N 21
0IT N2 H2 SING N N 22
0IT CA2 C2 SING N N 23
0IT CA2 CB1 SING N N 24
0IT CA2 HA1 SING N N 25
0IT C2 O2 DOUB N N 26
0IT C2 HXT SING N N 27
0IT CB1 CG1 SING N N 28
0IT CB1 HB21 SING N N 29
0IT CB1 HB31 SING N N 30
0IT CG1 CD1 SING N N 31
0IT CG1 HG21 SING N N 32
0IT CG1 HG31 SING N N 33
0IT CD1 NE SING N N 34
0IT CD1 HD21 SING N N 35
0IT CD1 HD31 SING N N 36
0IT NE CZ SING N N 37
0IT NE HE SING N N 38
0IT CZ NH1 SING N N 39
0IT CZ NH2 DOUB N N 40
0IT NH1 HH11 SING N N 41
0IT NH1 HH12 SING N N 42
0IT NH2 HH21 SING N N 43
0IT NH2 HH22 SING N N 44
0IT C3 C11 SING N N 45
0IT C3 S SING N N 46
0IT C3 H11 SING N N 47
0IT C3 H2A SING N N 48
0IT C11 C21 DOUB Y N 49
0IT C11 C6 SING Y N 50
0IT C21 C31 SING Y N 51
0IT C21 H21 SING N N 52
0IT C31 C4 DOUB Y N 53
0IT C31 H3 SING N N 54
0IT C4 C5 SING Y N 55
0IT C4 H4 SING N N 56
0IT C5 C6 DOUB Y N 57
0IT C5 H5 SING N N 58
0IT C6 H6 SING N N 59
0IT S O1S DOUB N N 60
0IT S O2S DOUB N N 61
0IT N S SING N N 62
0IT C N1 SING N N 63
0IT C1 N2 SING N N 64
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0IT SMILES ACDLabs 12.01 "O=C(NC(C=O)CCCNC(=[NH2+])\\N)CN2C(=O)C(NS(=O)(=O)Cc1ccccc1)CCC2"
0IT InChI InChI 1.03 "InChI=1S/C20H30N6O5S/c21-20(22)23-10-4-8-16(13-27)24-18(28)12-26-11-5-9-17(19(26)29)25-32(30,31)14-15-6-2-1-3-7-15/h1-3,6-7,13,16-17,25H,4-5,8-12,14H2,(H,24,28)(H4,21,22,23)/p+1/t16-,17-/m0/s1"
0IT InChIKey InChI 1.03 WZYFZDIYCCGIQM-IRXDYDNUSA-O
0IT SMILES_CANONICAL CACTVS 3.385 "NC(=[NH2+])NCCC[C@H](NC(=O)CN1CCC[C@H](N[S](=O)(=O)Cc2ccccc2)C1=O)C=O"
0IT SMILES CACTVS 3.385 "NC(=[NH2+])NCCC[CH](NC(=O)CN1CCC[CH](N[S](=O)(=O)Cc2ccccc2)C1=O)C=O"
0IT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "c1ccc(cc1)CS(=O)(=O)N[C@H]2CCCN(C2=O)CC(=O)N[C@@H](CCCNC(=[NH2+])N)C=O"
0IT SMILES "OpenEye OEToolkits" 1.7.5 "c1ccc(cc1)CS(=O)(=O)NC2CCCN(C2=O)CC(=O)NC(CCCNC(=[NH2+])N)C=O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0IT "SYSTEMATIC NAME" ACDLabs 12.01 "amino({(4S)-4-[({(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}acetyl)amino]-5-oxopentyl}amino)methaniminium"
0IT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[[(4S)-5-oxo-4-[2-[(3S)-2-oxo-3-(phenylmethylsulfonylamino)piperidin-1-yl]ethanoylamino]pentyl]amino]methylidene]azanium"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0IT "Create component" 2008-12-11 RCSB
0IT "Other modification" 2010-11-19 RCSB
0IT "Modify aromatic_flag" 2011-06-04 RCSB
0IT "Modify descriptor" 2011-06-04 RCSB
0IT "Modify descriptor" 2012-01-05 RCSB
0IT "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0IT
_pdbx_chem_comp_synonyms.name CVS1578
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##