data_0K8 # _chem_comp.id 0K8 _chem_comp.name "Ruthenium bis-(phenanthroline) 12,17-dihydro-naphthodipyridophenazine-12,17-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C50 H28 N8 O2 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Ruthenium polypridyl complex" _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2021-06-07 _chem_comp.pdbx_modified_date 2022-04-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 873.880 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0K8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7OTB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0K8 C10 C1 C 0 1 Y N N -4.910 15.447 42.002 ? ? ? C10 0K8 1 0K8 C11 C2 C 0 1 Y N N -4.776 16.316 40.876 ? ? ? C11 0K8 2 0K8 C12 C3 C 0 1 Y N N -3.935 16.003 39.840 ? ? ? C12 0K8 3 0K8 C13 C4 C 0 1 Y N N -4.192 14.252 42.085 ? ? ? C13 0K8 4 0K8 C14 C5 C 0 1 Y N N -3.318 13.893 40.988 ? ? ? C14 0K8 5 0K8 C15 C6 C 0 1 Y N N -3.185 14.787 39.857 ? ? ? C15 0K8 6 0K8 C17 C7 C 0 1 Y N N -1.702 13.432 38.845 ? ? ? C17 0K8 7 0K8 C16 C8 C 0 1 Y N N -1.810 12.550 39.951 ? ? ? C16 0K8 8 0K8 N7 N1 N 0 1 Y N N 3.388 10.528 37.950 ? ? ? N7 0K8 9 0K8 N6 N2 N 0 1 Y N N 0.126 8.740 36.007 ? ? ? N6 0K8 10 0K8 N1 N3 N 0 1 Y N N -2.603 12.762 40.990 ? ? ? N1 0K8 11 0K8 N3 N4 N 0 1 Y N N 0.539 9.903 38.812 ? ? ? N3 0K8 12 0K8 C18 C9 C 0 1 Y N N -1.036 11.306 39.939 ? ? ? C18 0K8 13 0K8 C19 C10 C 0 1 Y N N -1.126 10.390 40.997 ? ? ? C19 0K8 14 0K8 C20 C11 C 0 1 Y N N -0.349 9.236 40.928 ? ? ? C20 0K8 15 0K8 C21 C12 C 0 1 Y N N 0.469 9.029 39.819 ? ? ? C21 0K8 16 0K8 C22 C13 C 0 1 Y N N -0.211 11.021 38.863 ? ? ? C22 0K8 17 0K8 C23 C14 C 0 1 Y N N -0.102 11.928 37.755 ? ? ? C23 0K8 18 0K8 C24 C15 C 0 1 Y N N -0.829 13.109 37.729 ? ? ? C24 0K8 19 0K8 C25 C16 C 0 1 Y N N 0.861 12.380 35.703 ? ? ? C25 0K8 20 0K8 C26 C17 C 0 1 Y N N 0.158 13.579 35.605 ? ? ? C26 0K8 21 0K8 C27 C18 C 0 1 Y N N -0.690 13.950 36.624 ? ? ? C27 0K8 22 0K8 C28 C19 C 0 1 Y N N 3.620 10.221 34.654 ? ? ? C28 0K8 23 0K8 C29 C20 C 0 1 Y N N 3.994 10.129 33.308 ? ? ? C29 0K8 24 0K8 C30 C21 C 0 1 Y N N 3.154 9.508 32.401 ? ? ? C30 0K8 25 0K8 C31 C22 C 0 1 Y N N 1.627 9.111 34.211 ? ? ? C31 0K8 26 0K8 C32 C23 C 0 1 Y N N 1.933 8.968 32.853 ? ? ? C32 0K8 27 0K8 C33 C24 C 0 1 Y N N 0.979 8.312 31.994 ? ? ? C33 0K8 28 0K8 C34 C25 C 0 1 Y N N -0.180 7.804 32.463 ? ? ? C34 0K8 29 0K8 C35 C26 C 0 1 Y N N -0.518 7.942 33.844 ? ? ? C35 0K8 30 0K8 C36 C27 C 0 1 Y N N -1.704 7.447 34.420 ? ? ? C36 0K8 31 0K8 C37 C28 C 0 1 Y N N -1.930 7.630 35.769 ? ? ? C37 0K8 32 0K8 C38 C29 C 0 1 Y N N -0.973 8.278 36.543 ? ? ? C38 0K8 33 0K8 C39 C30 C 0 1 Y N N 0.399 8.582 34.695 ? ? ? C39 0K8 34 0K8 C40 C31 C 0 1 Y N N 3.720 11.801 38.085 ? ? ? C40 0K8 35 0K8 C41 C32 C 0 1 Y N N 4.899 12.174 38.727 ? ? ? C41 0K8 36 0K8 C42 C33 C 0 1 Y N N 5.746 11.194 39.218 ? ? ? C42 0K8 37 0K8 C43 C34 C 0 1 Y N N 5.408 9.842 39.068 ? ? ? C43 0K8 38 0K8 C44 C35 C 0 1 Y N N 4.205 9.557 38.433 ? ? ? C44 0K8 39 0K8 C45 C36 C 0 1 Y N N 6.219 8.758 39.531 ? ? ? C45 0K8 40 0K8 C46 C37 C 0 1 Y N N 5.831 7.463 39.369 ? ? ? C46 0K8 41 0K8 C47 C38 C 0 1 Y N N 4.594 7.137 38.713 ? ? ? C47 0K8 42 0K8 C48 C39 C 0 1 Y N N 3.801 8.194 38.247 ? ? ? C48 0K8 43 0K8 C49 C40 C 0 1 Y N N 4.139 5.819 38.493 ? ? ? C49 0K8 44 0K8 C50 C41 C 0 1 Y N N 2.942 5.607 37.845 ? ? ? C50 0K8 45 0K8 C51 C42 C 0 1 Y N N 2.215 6.720 37.407 ? ? ? C51 0K8 46 0K8 C52 C43 C 0 1 N N N -4.383 13.328 43.243 ? ? ? C52 0K8 47 0K8 C53 C44 C 0 1 Y N N -5.472 13.694 44.188 ? ? ? C53 0K8 48 0K8 C54 C45 C 0 1 Y N N -6.149 14.961 44.130 ? ? ? C54 0K8 49 0K8 C55 C46 C 0 1 Y N N -5.847 12.753 45.142 ? ? ? C55 0K8 50 0K8 C56 C47 C 0 1 Y N N -6.848 13.044 46.059 ? ? ? C56 0K8 51 0K8 C57 C48 C 0 1 Y N N -7.492 14.275 46.020 ? ? ? C57 0K8 52 0K8 C58 C49 C 0 1 Y N N -7.146 15.233 45.075 ? ? ? C58 0K8 53 0K8 C9 C50 C 0 1 N N N -5.795 15.951 43.107 ? ? ? C9 0K8 54 0K8 N2 N5 N 0 1 Y N N -2.398 14.556 38.807 ? ? ? N2 0K8 55 0K8 N4 N6 N 0 1 Y N N 0.721 11.577 36.753 ? ? ? N4 0K8 56 0K8 N5 N7 N 0 1 Y N N 2.465 9.713 35.102 ? ? ? N5 0K8 57 0K8 N8 N8 N 0 1 Y N N 2.640 7.963 37.598 ? ? ? N8 0K8 58 0K8 O59 O1 O 0 1 N N N -3.810 12.243 43.291 ? ? ? O59 0K8 59 0K8 O60 O2 O 0 1 N N N -6.361 17.040 43.051 ? ? ? O60 0K8 60 0K8 RU1 RU1 RU 2 0 N N N 1.659 9.734 37.048 ? ? ? RU1 0K8 61 0K8 H62 H1 H 0 1 N N N -5.346 17.233 40.841 ? ? ? H62 0K8 62 0K8 H63 H2 H 0 1 N N N -3.839 16.681 39.005 ? ? ? H63 0K8 63 0K8 H64 H3 H 0 1 N N N -1.777 10.574 41.839 ? ? ? H64 0K8 64 0K8 H65 H4 H 0 1 N N N -0.380 8.509 41.726 ? ? ? H65 0K8 65 0K8 H66 H5 H 0 1 N N N 1.067 8.131 39.772 ? ? ? H66 0K8 66 0K8 H67 H6 H 0 1 N N N 1.535 12.097 34.908 ? ? ? H67 0K8 67 0K8 H68 H7 H 0 1 N N N 0.277 14.211 34.738 ? ? ? H68 0K8 68 0K8 H69 H8 H 0 1 N N N -1.240 14.878 36.569 ? ? ? H69 0K8 69 0K8 H70 H9 H 0 1 N N N 4.281 10.715 35.350 ? ? ? H70 0K8 70 0K8 H71 H10 H 0 1 N N N 4.936 10.542 32.979 ? ? ? H71 0K8 71 0K8 H72 H11 H 0 1 N N N 3.430 9.438 31.359 ? ? ? H72 0K8 72 0K8 H73 H12 H 0 1 N N N 1.199 8.224 30.940 ? ? ? H73 0K8 73 0K8 H74 H13 H 0 1 N N N -0.854 7.292 31.792 ? ? ? H74 0K8 74 0K8 H75 H14 H 0 1 N N N -2.430 6.929 33.811 ? ? ? H75 0K8 75 0K8 H76 H15 H 0 1 N N N -2.844 7.273 36.221 ? ? ? H76 0K8 76 0K8 H77 H16 H 0 1 N N N -1.141 8.401 37.603 ? ? ? H77 0K8 77 0K8 H78 H17 H 0 1 N N N 3.066 12.565 37.691 ? ? ? H78 0K8 78 0K8 H79 H18 H 0 1 N N N 5.150 13.218 38.841 ? ? ? H79 0K8 79 0K8 H80 H19 H 0 1 N N N 6.664 11.471 39.715 ? ? ? H80 0K8 80 0K8 H81 H20 H 0 1 N N N 7.158 8.971 40.019 ? ? ? H81 0K8 81 0K8 H82 H21 H 0 1 N N N 6.462 6.669 39.739 ? ? ? H82 0K8 82 0K8 H83 H22 H 0 1 N N N 4.728 4.979 38.832 ? ? ? H83 0K8 83 0K8 H84 H23 H 0 1 N N N 2.573 4.606 37.679 ? ? ? H84 0K8 84 0K8 H85 H24 H 0 1 N N N 1.277 6.562 36.896 ? ? ? H85 0K8 85 0K8 H86 H25 H 0 1 N N N -5.357 11.791 45.169 ? ? ? H86 0K8 86 0K8 H87 H26 H 0 1 N N N -7.127 12.313 46.804 ? ? ? H87 0K8 87 0K8 H88 H27 H 0 1 N N N -8.273 14.490 46.735 ? ? ? H88 0K8 88 0K8 H89 H28 H 0 1 N N N -7.647 16.190 45.069 ? ? ? H89 0K8 89 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0K8 C33 C34 DOUB Y N 1 0K8 C33 C32 SING Y N 2 0K8 C30 C32 SING Y N 3 0K8 C30 C29 DOUB Y N 4 0K8 C34 C35 SING Y N 5 0K8 C32 C31 DOUB Y N 6 0K8 C29 C28 SING Y N 7 0K8 C35 C36 SING Y N 8 0K8 C35 C39 DOUB Y N 9 0K8 C31 C39 SING Y N 10 0K8 C31 N5 SING Y N 11 0K8 C36 C37 DOUB Y N 12 0K8 C28 N5 DOUB Y N 13 0K8 C39 N6 SING Y N 14 0K8 N5 RU1 SING N N 15 0K8 C26 C25 SING Y N 16 0K8 C26 C27 DOUB Y N 17 0K8 C25 N4 DOUB Y N 18 0K8 C37 C38 SING Y N 19 0K8 N6 C38 DOUB Y N 20 0K8 N6 RU1 SING N N 21 0K8 C27 C24 SING Y N 22 0K8 N4 RU1 SING N N 23 0K8 N4 C23 SING Y N 24 0K8 RU1 N8 SING N N 25 0K8 RU1 N7 SING N N 26 0K8 RU1 N3 SING N N 27 0K8 C51 N8 DOUB Y N 28 0K8 C51 C50 SING Y N 29 0K8 N8 C48 SING Y N 30 0K8 C24 C23 DOUB Y N 31 0K8 C24 C17 SING Y N 32 0K8 C23 C22 SING Y N 33 0K8 C50 C49 DOUB Y N 34 0K8 N7 C40 DOUB Y N 35 0K8 N7 C44 SING Y N 36 0K8 C40 C41 SING Y N 37 0K8 C48 C44 SING Y N 38 0K8 C48 C47 DOUB Y N 39 0K8 C44 C43 DOUB Y N 40 0K8 C49 C47 SING Y N 41 0K8 C47 C46 SING Y N 42 0K8 C41 C42 DOUB Y N 43 0K8 N2 C17 SING Y N 44 0K8 N2 C15 DOUB Y N 45 0K8 N3 C22 SING Y N 46 0K8 N3 C21 DOUB Y N 47 0K8 C17 C16 DOUB Y N 48 0K8 C22 C18 DOUB Y N 49 0K8 C43 C42 SING Y N 50 0K8 C43 C45 SING Y N 51 0K8 C46 C45 DOUB Y N 52 0K8 C21 C20 SING Y N 53 0K8 C12 C15 SING Y N 54 0K8 C12 C11 DOUB Y N 55 0K8 C15 C14 SING Y N 56 0K8 C18 C16 SING Y N 57 0K8 C18 C19 SING Y N 58 0K8 C16 N1 SING Y N 59 0K8 C11 C10 SING Y N 60 0K8 C20 C19 DOUB Y N 61 0K8 C14 N1 DOUB Y N 62 0K8 C14 C13 SING Y N 63 0K8 C10 C13 DOUB Y N 64 0K8 C10 C9 SING N N 65 0K8 C13 C52 SING N N 66 0K8 O60 C9 DOUB N N 67 0K8 C9 C54 SING N N 68 0K8 C52 O59 DOUB N N 69 0K8 C52 C53 SING N N 70 0K8 C54 C53 DOUB Y N 71 0K8 C54 C58 SING Y N 72 0K8 C53 C55 SING Y N 73 0K8 C58 C57 DOUB Y N 74 0K8 C55 C56 DOUB Y N 75 0K8 C57 C56 SING Y N 76 0K8 C11 H62 SING N N 77 0K8 C12 H63 SING N N 78 0K8 C19 H64 SING N N 79 0K8 C20 H65 SING N N 80 0K8 C21 H66 SING N N 81 0K8 C25 H67 SING N N 82 0K8 C26 H68 SING N N 83 0K8 C27 H69 SING N N 84 0K8 C28 H70 SING N N 85 0K8 C29 H71 SING N N 86 0K8 C30 H72 SING N N 87 0K8 C33 H73 SING N N 88 0K8 C34 H74 SING N N 89 0K8 C36 H75 SING N N 90 0K8 C37 H76 SING N N 91 0K8 C38 H77 SING N N 92 0K8 C40 H78 SING N N 93 0K8 C41 H79 SING N N 94 0K8 C42 H80 SING N N 95 0K8 C45 H81 SING N N 96 0K8 C46 H82 SING N N 97 0K8 C49 H83 SING N N 98 0K8 C50 H84 SING N N 99 0K8 C51 H85 SING N N 100 0K8 C55 H86 SING N N 101 0K8 C56 H87 SING N N 102 0K8 C57 H88 SING N N 103 0K8 C58 H89 SING N N 104 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0K8 InChI InChI 1.03 "InChI=1S/C26H12N4O2.2C12H8N2.Ru/c31-25-13-5-1-2-6-14(13)26(32)19-15(25)9-10-18-24(19)30-23-17-8-4-12-28-21(17)20-16(22(23)29-18)7-3-11-27-20;2*1-3-9-5-6-10-4-2-8-14-12(10)11(9)13-7-1;/h1-12H;2*1-8H;/q;;;+2" 0K8 InChIKey InChI 1.03 LEJPQQFNZLHEQD-UHFFFAOYSA-N 0K8 SMILES_CANONICAL CACTVS 3.385 "[Ru++].O=C1c2ccccc2C(=O)c3c1ccc4nc5c6cccnc6c7ncccc7c5nc34.c8cnc9c(c8)ccc%10cccnc9%10.c%11cnc%12c(c%11)ccc%13cccnc%12%13" 0K8 SMILES CACTVS 3.385 "[Ru++].O=C1c2ccccc2C(=O)c3c1ccc4nc5c6cccnc6c7ncccc7c5nc34.c8cnc9c(c8)ccc%10cccnc9%10.c%11cnc%12c(c%11)ccc%13cccnc%12%13" 0K8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3ccc4c(c3C2=O)nc5c6c7c8c(c5n4)C=CC=[N]8[Ru+2]91([N]7=CC=C6)([N]2=CC=Cc3c2c2c(cc3)C=CC=[N]92)[N]2=CC=Cc3c2c2c(cc3)C=CC=[N]12" 0K8 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3ccc4c(c3C2=O)nc5c6c7c8c(c5n4)C=CC=[N]8[Ru+2]91([N]7=CC=C6)([N]2=CC=Cc3c2c2c(cc3)C=CC=[N]92)[N]2=CC=Cc3c2c2c(cc3)C=CC=[N]12" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0K8 _pdbx_chem_comp_synonyms.name "Ruthenium polypridyl complex" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0K8 "Create component" 2021-06-07 PDBE 0K8 "Other modification" 2021-06-07 PDBE 0K8 "Initial release" 2022-04-06 RCSB ##