data_0KV
#
_chem_comp.id 0KV
_chem_comp.name "2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H34 N6 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms CVS1695
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-06-25
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 506.618
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0KV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CA8
_chem_comp.pdbx_subcomponent_list "PMS NVA GLY 3GA"
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0KV C7 C7 C 0 1 N N N 18.628 -17.100 26.164 4.020 -0.285 -0.530 C7 PMS 1
0KV C8 C8 C 0 1 Y N N 19.858 -16.260 26.060 5.110 -1.316 -0.389 C8 PMS 2
0KV C9 C9 C 0 1 Y N N 19.706 -14.891 26.207 5.302 -1.958 0.820 C9 PMS 3
0KV C10 C10 C 0 1 Y N N 20.844 -14.081 26.040 6.302 -2.903 0.949 C10 PMS 4
0KV C11 C11 C 0 1 Y N N 21.984 -14.575 25.425 7.110 -3.207 -0.130 C11 PMS 5
0KV C12 C12 C 0 1 Y N N 22.046 -15.936 25.120 6.918 -2.565 -1.339 C12 PMS 6
0KV C13 C13 C 0 1 Y N N 21.070 -16.786 25.638 5.914 -1.624 -1.471 C13 PMS 7
0KV S S S 0 1 N N N 17.937 -17.644 24.612 4.678 1.352 -0.111 S PMS 8
0KV O1S O1S O 0 1 N N N 16.677 -18.196 24.969 4.980 1.428 1.275 O1S PMS 9
0KV O2S O2S O 0 1 N N N 18.904 -18.295 23.788 5.616 1.778 -1.090 O2S PMS 10
0KV N1 N1 N 0 1 N N N 17.590 -16.324 23.663 3.392 2.377 -0.306 N NVA 11
0KV C1 C1 C 0 1 N N N 17.939 -14.315 22.340 1.184 1.402 -0.114 C NVA 12
0KV O1 O1 O 0 1 N N N 16.963 -13.936 22.987 1.553 0.402 -0.694 O NVA 13
0KV CA1 CA1 C 0 1 N N S 18.540 -15.644 22.878 2.219 2.253 0.563 CA1 NVA 14
0KV CB1 CB1 C 0 1 N N N 19.160 -16.412 21.751 1.645 3.645 0.844 CB NVA 15
0KV CD1 CD1 C 0 1 N N N 19.834 -14.158 20.728 -0.695 2.877 0.497 CD NVA 16
0KV CG1 CG1 C 0 1 N N N 20.219 -15.576 21.075 0.277 3.478 1.516 CG NVA 17
0KV C2 C2 C 0 1 N N N 16.693 -12.893 20.509 -1.492 -0.286 0.226 C GLY 18
0KV N2 N2 N 0 1 N N N 18.659 -13.655 21.461 -0.119 1.686 -0.113 N GLY 19
0KV O2 O2 O 0 1 N N N 16.831 -13.737 19.570 -1.099 -0.241 1.372 O GLY 20
0KV CA2 CA2 C 0 1 N N N 18.020 -12.371 21.156 -1.028 0.744 -0.771 CA GLY 21
0KV C3 C3 C 0 1 N N N 14.902 -10.901 18.260 -1.779 -3.375 0.893 C3 3GA 22
0KV N3 N3 N 0 1 N N N 15.981 -11.661 20.540 -2.341 -1.261 -0.157 N3 3GA 23
0KV O3 O3 O 0 1 N N N 15.891 -11.053 17.518 -0.783 -3.336 0.212 O3 3GA 24
0KV C4 C4 C 0 1 N N N 12.524 -13.306 21.025 -6.570 -2.321 0.079 C4 3GA 25
0KV C5 C5 C 0 1 N N N 12.345 -14.411 22.129 -7.634 -1.223 0.148 C5 3GA 26
0KV C6 C6 C 0 1 N N N 12.694 -13.855 23.541 -7.316 -0.144 -0.892 C6 3GA 27
0KV CA3 CA3 C 0 1 N N S 14.779 -11.525 19.656 -2.792 -2.262 0.812 CA3 3GA 28
0KV CB3 CB3 C 0 1 N N N 13.536 -11.001 20.413 -4.141 -2.832 0.367 CB3 3GA 29
0KV CD3 CD3 C 0 1 N N N 12.827 -11.425 22.856 -4.853 -0.653 -0.634 CD3 3GA 30
0KV NE3 NE3 N 0 1 N N N 12.164 -12.448 23.740 -5.943 0.331 -0.676 NE3 3GA 31
0KV CG3 CG3 C 0 1 N N S 13.293 -12.050 21.523 -5.198 -1.727 0.404 CG3 3GA 32
0KV CZ3 CZ3 C 0 1 N N N 11.163 -12.068 24.723 -5.682 1.672 -0.517 CZ3 3GA 33
0KV NH1 NH1 N 0 1 N N N 10.465 -12.997 25.301 -6.693 2.591 -0.672 NH1 3GA 34
0KV NH2 NH2 N 0 1 N N N 10.914 -10.808 24.930 -4.478 2.071 -0.221 NH2 3GA 35
0KV H7 H7 H 0 1 N N N 18.888 -17.998 26.743 3.657 -0.279 -1.558 H1 PMS 36
0KV H7A H7A H 0 1 N N N 17.861 -16.501 26.676 3.199 -0.530 0.143 H2A PMS 37
0KV H9 H9 H 0 1 N N N 18.744 -14.459 26.442 4.671 -1.721 1.663 H2 PMS 38
0KV H10 H10 H 0 1 N N N 20.829 -13.061 26.395 6.452 -3.405 1.894 H3 PMS 39
0KV H11 H11 H 0 1 N N N 22.808 -13.919 25.186 7.892 -3.945 -0.029 H4 PMS 40
0KV H12 H12 H 0 1 N N N 22.836 -16.323 24.494 7.550 -2.801 -2.183 H5 PMS 41
0KV H13 H13 H 0 1 N N N 21.256 -17.847 25.710 5.764 -1.122 -2.415 H6 PMS 42
0KV HA1 HA1 H 0 1 N N N 19.373 -15.463 23.573 2.512 1.787 1.503 HA NVA 43
0KV HN1 HN1 H 0 1 N N N 16.905 -16.650 23.011 3.415 3.059 -0.996 H NVA 44
0KV HB1 HB1 H 0 1 N N N 19.620 -17.330 22.147 2.316 4.191 1.507 HB2 NVA 45
0KV HB1A HB1A H 0 0 N N N 18.382 -16.674 21.019 1.531 4.190 -0.093 HB3 NVA 46
0KV HG1 HG1 H 0 1 N N N 20.482 -16.082 20.134 0.363 2.814 2.375 HG2 NVA 47
0KV HG1A HG1A H 0 0 N N N 21.078 -15.522 21.760 -0.088 4.453 1.839 HG3 NVA 48
0KV HD1 HD1 H 0 1 N N N 19.603 -14.123 19.653 -0.913 3.610 -0.280 HD1 NVA 49
0KV HD1A HD1A H 0 0 N N N 20.687 -13.507 20.968 -1.622 2.610 1.005 HD2 NVA 50
0KV HA2 HA2 H 0 1 N N N 18.615 -11.747 20.472 -0.506 0.248 -1.590 HA2 GLY 51
0KV HA2A HA2A H 0 0 N N N 17.848 -11.754 22.050 -1.889 1.284 -1.164 HA3 GLY 52
0KV HN3 HN3 H 0 1 N N N 16.274 -10.910 21.133 -2.652 -1.299 -1.075 HN3 3GA 53
0KV H4A H4A H 0 1 N N N 13.089 -13.745 20.190 -6.807 -3.102 0.802 H4A 3GA 54
0KV H5A H5A H 0 1 N N N 13.014 -15.254 21.902 -8.614 -1.652 -0.060 H5A 3GA 55
0KV H6A H6A H 0 1 N N N 13.788 -13.839 23.653 -7.404 -0.565 -1.893 H6A 3GA 56
0KV HA3 HA3 H 0 1 N N N 14.652 -12.583 19.382 -2.900 -1.797 1.792 HA3 3GA 57
0KV HB3 HB3 H 0 1 N N N 13.721 -10.005 20.841 -4.054 -3.218 -0.649 HB3 3GA 58
0KV HB3A HB3A H 0 0 N N N 12.667 -10.921 19.744 -4.434 -3.638 1.038 HB3A 3GA 59
0KV HD3 HD3 H 0 1 N N N 12.107 -10.622 22.639 -4.740 -1.116 -1.614 HD3 3GA 60
0KV HD3A HD3A H 0 0 N N N 13.702 -11.015 23.381 -3.923 -0.158 -0.354 HD3A 3GA 61
0KV HG3 HG3 H 0 1 N N N 14.273 -12.472 21.791 -5.221 -1.279 1.397 HG3 3GA 62
0KV HNH1 HNH1 H 0 0 N N N 9.719 -12.750 25.919 -7.603 2.291 -0.822 HNH1 3GA 63
0KV HNHA HNHA H 0 0 N N N 10.673 -13.960 25.128 -6.495 3.540 -0.631 HNHA 3GA 64
0KV HNH2 HNH2 H 0 0 N N N 10.151 -10.676 25.563 -4.294 3.017 -0.109 HNH2 3GA 65
0KV H3 H3 H 0 1 N N N 14.084 -10.295 17.900 -1.944 -4.208 1.561 H3 3GA 66
0KV H4 H4 H 0 1 N N N 11.524 -12.987 20.695 -6.553 -2.748 -0.924 H4 3GA 67
0KV H5 H5 H 0 1 N N N 11.299 -14.750 22.128 -7.634 -0.779 1.144 H5 3GA 68
0KV H6 H6 H 0 1 N N N 12.244 -14.512 24.300 -8.012 0.687 -0.780 H6 3GA 69
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0KV C2 N3 SING N N 1
0KV C2 CA2 SING N N 2
0KV N2 C1 SING N N 3
0KV O2 C2 DOUB N N 4
0KV CA2 N2 SING N N 5
0KV CA2 HA2 SING N N 6
0KV CA2 HA2A SING N N 7
0KV C3 CA3 SING N N 8
0KV C3 H3 SING N N 9
0KV N3 HN3 SING N N 10
0KV O3 C3 DOUB N N 11
0KV C4 CG3 SING N N 12
0KV C4 C5 SING N N 13
0KV C4 H4 SING N N 14
0KV C4 H4A SING N N 15
0KV C5 C6 SING N N 16
0KV C5 H5 SING N N 17
0KV C5 H5A SING N N 18
0KV C6 NE3 SING N N 19
0KV C6 H6 SING N N 20
0KV C6 H6A SING N N 21
0KV C7 H7 SING N N 22
0KV C7 H7A SING N N 23
0KV C8 C7 SING N N 24
0KV C8 C9 SING Y N 25
0KV C9 H9 SING N N 26
0KV C10 C9 DOUB Y N 27
0KV C10 H10 SING N N 28
0KV C11 C10 SING Y N 29
0KV C11 H11 SING N N 30
0KV C12 C11 DOUB Y N 31
0KV C12 C13 SING Y N 32
0KV C12 H12 SING N N 33
0KV C13 C8 DOUB Y N 34
0KV C13 H13 SING N N 35
0KV S O1S DOUB N N 36
0KV S C7 SING N N 37
0KV O2S S DOUB N N 38
0KV N1 S SING N N 39
0KV N1 HN1 SING N N 40
0KV C1 CA1 SING N N 41
0KV C1 O1 DOUB N N 42
0KV CA1 N1 SING N N 43
0KV CA1 HA1 SING N N 44
0KV CB1 CA1 SING N N 45
0KV CB1 HB1 SING N N 46
0KV CB1 HB1A SING N N 47
0KV CD1 N2 SING N N 48
0KV CD1 CG1 SING N N 49
0KV CD1 HD1 SING N N 50
0KV CD1 HD1A SING N N 51
0KV CG1 CB1 SING N N 52
0KV CG1 HG1 SING N N 53
0KV CG1 HG1A SING N N 54
0KV CA3 N3 SING N N 55
0KV CA3 CB3 SING N N 56
0KV CA3 HA3 SING N N 57
0KV CB3 CG3 SING N N 58
0KV CB3 HB3 SING N N 59
0KV CB3 HB3A SING N N 60
0KV CD3 NE3 SING N N 61
0KV CD3 HD3 SING N N 62
0KV CD3 HD3A SING N N 63
0KV NE3 CZ3 SING N N 64
0KV CG3 CD3 SING N N 65
0KV CG3 HG3 SING N N 66
0KV NH1 HNH1 SING N N 67
0KV NH1 HNHA SING N N 68
0KV NH2 HNH2 SING N N 69
0KV CZ3 NH1 SING N N 70
0KV CZ3 NH2 DOUB N N 71
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0KV SMILES ACDLabs 12.01 "O=C(NC(C=O)CC1CCCN(C(=[N@H])N)C1)CN3C(=O)C(NS(=O)(=O)Cc2ccccc2)CCC3"
0KV SMILES_CANONICAL CACTVS 3.370 "NC(=N)N1CCC[C@@H](C[C@H](NC(=O)CN2CCC[C@H](N[S](=O)(=O)Cc3ccccc3)C2=O)C=O)C1"
0KV SMILES CACTVS 3.370 "NC(=N)N1CCC[CH](C[CH](NC(=O)CN2CCC[CH](N[S](=O)(=O)Cc3ccccc3)C2=O)C=O)C1"
0KV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(\N)/N1CCC[C@H](C1)C[C@@H](C=O)NC(=O)CN2CCC[C@@H](C2=O)NS(=O)(=O)Cc3ccccc3"
0KV SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CS(=O)(=O)NC2CCCN(C2=O)CC(=O)NC(CC3CCCN(C3)C(=N)N)C=O"
0KV InChI InChI 1.03 "InChI=1S/C23H34N6O5S/c24-23(25)29-11-4-8-18(13-29)12-19(15-30)26-21(31)14-28-10-5-9-20(22(28)32)27-35(33,34)16-17-6-2-1-3-7-17/h1-3,6-7,15,18-20,27H,4-5,8-14,16H2,(H3,24,25)(H,26,31)/t18-,19-,20-/m0/s1"
0KV InChIKey InChI 1.03 DATYERRDSFNBDN-UFYCRDLUSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0KV "SYSTEMATIC NAME" ACDLabs 12.01 "2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin-1-yl}-N-{(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxopropan-2-yl}acetamide"
0KV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N-[(2S)-1-[(3S)-1-carbamimidoylpiperidin-3-yl]-3-oxo-propan-2-yl]-2-[(3S)-2-oxo-3-(phenylmethylsulfonylamino)piperidin-1-yl]ethanamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0KV "Create component" 2010-06-25 RCSB
0KV "Modify descriptor" 2011-06-04 RCSB
0KV "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0KV
_pdbx_chem_comp_synonyms.name CVS1695
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##