data_0L3 # _chem_comp.id 0L3 _chem_comp.name "7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H42 N5 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-02-08 _chem_comp.pdbx_modified_date 2012-05-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 741.558 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0L3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4DF4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0L3 O1G O1G O 0 1 N N N 15.292 -13.833 -14.669 7.796 -6.569 -0.968 O1G 0L3 1 0L3 PG PG P 0 1 N N N 16.462 -14.185 -13.781 7.804 -5.411 -1.888 PG 0L3 2 0L3 O3G O3G O 0 1 N N N 17.521 -15.056 -14.413 9.322 -5.053 -2.287 O3G 0L3 3 0L3 O2G O2G O 0 1 N N N 17.020 -13.005 -13.022 6.971 -5.775 -3.217 O2G 0L3 4 0L3 O3B O3B O 0 1 N N N 15.807 -15.117 -12.641 7.127 -4.143 -1.161 O3B 0L3 5 0L3 PB PB P 0 1 N N N 16.475 -16.521 -12.216 5.854 -3.958 -0.193 PB 0L3 6 0L3 O1B O1B O 0 1 N N N 15.449 -17.274 -11.406 4.501 -4.070 -1.058 O1B 0L3 7 0L3 O2B O2B O 0 1 N N N 17.098 -17.199 -13.419 5.865 -5.013 0.844 O2B 0L3 8 0L3 O3A O3A O 0 1 N N N 17.626 -16.031 -11.200 5.922 -2.512 0.511 O3A 0L3 9 0L3 PA PA P 0 1 N N N 19.148 -16.503 -11.417 5.246 -1.875 1.827 PA 0L3 10 0L3 O2A O2A O 0 1 N N N 19.388 -16.699 -12.897 3.843 -2.335 1.932 O2A 0L3 11 0L3 O1A O1A O 0 1 N N N 20.035 -15.568 -10.632 6.064 -2.346 3.131 O1A 0L3 12 0L3 "O5'" O5* O 0 1 N N N 19.121 -17.919 -10.658 5.278 -0.269 1.724 O5* 0L3 13 0L3 "C5'" C5* C 0 1 N N N 19.267 -19.144 -11.369 4.661 0.585 2.688 C5* 0L3 14 0L3 "C4'" C4* C 0 1 N N R 18.602 -20.232 -10.543 4.879 2.046 2.289 C4* 0L3 15 0L3 "C3'" C3* C 0 1 N N S 17.222 -19.796 -10.085 4.329 2.990 3.382 C3* 0L3 16 0L3 "O3'" O3* O 0 1 N N N 16.202 -20.151 -11.022 5.385 3.441 4.232 O3* 0L3 17 0L3 "C2'" C2* C 0 1 N N N 17.034 -20.520 -8.768 3.729 4.172 2.589 C2* 0L3 18 0L3 "O4'" O4* O 0 1 N N N 19.341 -20.475 -9.344 4.114 2.365 1.107 O4* 0L3 19 0L3 "C1'" C1* C 0 1 N N R 18.450 -20.741 -8.259 3.987 3.803 1.111 C1* 0L3 20 0L3 N9 N9 N 0 1 Y N N 18.682 -19.757 -7.175 2.857 4.219 0.277 N9 0L3 21 0L3 C4 C4 C 0 1 Y N N 18.377 -19.981 -5.875 2.695 5.471 -0.253 C4 0L3 22 0L3 N3 N3 N 0 1 Y N N 17.855 -21.029 -5.192 3.406 6.597 -0.204 N3 0L3 23 0L3 C2 C2 C 0 1 Y N N 17.663 -20.973 -3.860 2.994 7.679 -0.829 C2 0L3 24 0L3 N1 N1 N 0 1 Y N N 17.962 -19.902 -3.101 1.874 7.716 -1.528 N1 0L3 25 0L3 C6 C6 C 0 1 Y N N 18.490 -18.777 -3.634 1.098 6.642 -1.635 C6 0L3 26 0L3 N6 N6 N 0 1 N N N 18.792 -17.697 -2.870 -0.075 6.684 -2.368 N6 0L3 27 0L3 C5 C5 C 0 1 Y N N 18.723 -18.779 -5.097 1.496 5.466 -0.986 C5 0L3 28 0L3 C8 C8 C 0 1 Y N N 19.194 -18.516 -7.374 1.818 3.410 -0.089 C8 0L3 29 0L3 C7 C7 C 0 1 Y N N 19.234 -17.892 -6.148 0.944 4.110 -0.859 C7 0L3 30 0L3 C31 C31 C 0 1 N N N 19.692 -16.656 -5.932 -0.270 3.621 -1.439 C31 0L3 31 0L3 C32 C32 C 0 1 N N N 20.084 -15.556 -5.738 -1.266 3.219 -1.914 C32 0L3 32 0L3 C33 C33 C 0 1 N N N 20.596 -14.204 -5.460 -2.514 2.716 -2.510 C33 0L3 33 0L3 C34 C34 C 0 1 N N N 21.403 -13.653 -6.624 -3.452 2.237 -1.401 C34 0L3 34 0L3 C35 C35 C 0 1 N N N 20.772 -13.969 -7.974 -4.750 1.714 -2.020 C35 0L3 35 0L3 N36 N36 N 0 1 N N N 21.348 -13.193 -9.062 -5.648 1.255 -0.958 N36 0L3 36 0L3 C37 C37 C 0 1 N N N 21.053 -11.904 -9.225 -6.858 0.750 -1.270 C37 0L3 37 0L3 O38 O38 O 0 1 N N N 20.106 -11.371 -8.674 -7.203 0.676 -2.430 O38 0L3 38 0L3 C39 C39 C 0 1 N N N 21.943 -11.098 -10.142 -7.782 0.277 -0.177 C39 0L3 39 0L3 C40 C40 C 0 1 N N N 21.467 -11.215 -11.586 -9.079 -0.245 -0.797 C40 0L3 40 0L3 C41 C41 C 0 1 N N N 22.084 -10.115 -12.442 -10.017 -0.725 0.313 C41 0L3 41 0L3 C42 C42 C 0 1 N N N 22.217 -10.562 -13.893 -11.315 -1.248 -0.307 C42 0L3 42 0L3 C43 C43 C 0 1 N N N 20.862 -10.650 -14.582 -12.253 -1.727 0.803 C43 0L3 43 0L3 C44 C44 C 0 1 N N N 20.972 -11.436 -15.883 -13.550 -2.250 0.183 C44 0L3 44 0L3 C45 C45 C 0 1 N N N 19.743 -11.220 -16.759 -14.488 -2.730 1.293 C45 0L3 45 0L3 C46 C46 C 0 1 N N N 19.662 -9.767 -17.213 -15.786 -3.253 0.673 C46 0L3 46 0L3 C47 C47 C 0 1 N N N 18.254 -9.399 -17.667 -16.724 -3.732 1.783 C47 0L3 47 0L3 O48 O48 O 0 1 N N N 18.251 -8.060 -18.173 -17.936 -4.220 1.204 O48 0L3 48 0L3 H1 H1 H 0 1 N N N 17.441 -15.943 -14.082 9.792 -5.772 -2.730 H1 0L3 49 0L3 H2 H2 H 0 1 N N N 16.525 -12.224 -13.241 6.935 -5.060 -3.867 H2 0L3 50 0L3 H3 H3 H 0 1 N N N 15.318 -18.136 -11.783 4.426 -3.407 -1.759 H3 0L3 51 0L3 H4 H4 H 0 1 N N N 20.686 -15.188 -11.210 6.994 -2.078 3.130 H4 0L3 52 0L3 H5 H5 H 0 1 N N N 18.780 -19.068 -12.352 3.592 0.375 2.728 H5 0L3 53 0L3 H6 H6 H 0 1 N N N 20.334 -19.375 -11.505 5.102 0.406 3.668 H6 0L3 54 0L3 H7 H7 H 0 1 N N N 18.518 -21.150 -11.143 5.939 2.238 2.121 H7 0L3 55 0L3 H8 H8 H 0 1 N N N 17.223 -18.710 -9.908 3.556 2.489 3.965 H8 0L3 56 0L3 H9 H9 H 0 1 N N N 15.358 -19.861 -10.697 5.095 4.037 4.936 H9 0L3 57 0L3 H10 H10 H 0 1 N N N 16.458 -19.903 -8.063 2.659 4.256 2.780 H10 0L3 58 0L3 H11 H11 H 0 1 N N N 16.520 -21.480 -8.921 4.238 5.102 2.845 H11 0L3 59 0L3 H12 H12 H 0 1 N N N 18.564 -21.769 -7.884 4.910 4.266 0.761 H12 0L3 60 0L3 H13 H13 H 0 1 N N N 17.244 -21.840 -3.371 3.596 8.574 -0.767 H13 0L3 61 0L3 H14 H14 H 0 1 N N N 18.563 -17.889 -1.916 -0.340 7.505 -2.812 H14 0L3 62 0L3 H15 H15 H 0 1 N N N 19.769 -17.498 -2.945 -0.632 5.894 -2.438 H15 0L3 63 0L3 H16 H16 H 0 1 N N N 19.511 -18.097 -8.318 1.707 2.373 0.193 H16 0L3 64 0L3 H17 H17 H 0 1 N N N 21.239 -14.244 -4.569 -2.996 3.516 -3.073 H17 0L3 65 0L3 H18 H18 H 0 1 N N N 19.745 -13.534 -5.269 -2.289 1.886 -3.179 H18 0L3 66 0L3 H19 H19 H 0 1 N N N 22.411 -14.093 -6.594 -2.970 1.437 -0.838 H19 0L3 67 0L3 H20 H20 H 0 1 N N N 21.477 -12.561 -6.516 -3.678 3.067 -0.732 H20 0L3 68 0L3 H21 H21 H 0 1 N N N 19.695 -13.751 -7.918 -5.232 2.513 -2.583 H21 0L3 69 0L3 H22 H22 H 0 1 N N N 20.919 -15.038 -8.189 -4.524 0.884 -2.689 H22 0L3 70 0L3 H23 H23 H 0 1 N N N 21.978 -13.636 -9.700 -5.372 1.314 -0.030 H23 0L3 71 0L3 H24 H24 H 0 1 N N N 22.974 -11.475 -10.069 -7.300 -0.522 0.386 H24 0L3 72 0L3 H25 H25 H 0 1 N N N 21.916 -10.042 -9.836 -8.007 1.108 0.492 H25 0L3 73 0L3 H26 H26 H 0 1 N N N 20.371 -11.124 -11.614 -9.561 0.554 -1.359 H26 0L3 74 0L3 H27 H27 H 0 1 N N N 21.764 -12.195 -11.987 -8.854 -1.076 -1.466 H27 0L3 75 0L3 H28 H28 H 0 1 N N N 23.081 -9.870 -12.048 -9.535 -1.525 0.876 H28 0L3 76 0L3 H29 H29 H 0 1 N N N 21.443 -9.222 -12.398 -10.243 0.105 0.982 H29 0L3 77 0L3 H30 H30 H 0 1 N N N 22.695 -11.552 -13.918 -11.797 -0.448 -0.869 H30 0L3 78 0L3 H31 H31 H 0 1 N N N 22.845 -9.838 -14.433 -11.089 -2.078 -0.976 H31 0L3 79 0L3 H32 H32 H 0 1 N N N 20.502 -9.634 -14.803 -11.771 -2.527 1.366 H32 0L3 80 0L3 H33 H33 H 0 1 N N N 20.149 -11.155 -13.914 -12.479 -0.897 1.472 H33 0L3 81 0L3 H34 H34 H 0 1 N N N 21.063 -12.507 -15.649 -14.032 -1.451 -0.380 H34 0L3 82 0L3 H35 H35 H 0 1 N N N 21.866 -11.103 -16.430 -13.325 -3.080 -0.486 H35 0L3 83 0L3 H36 H36 H 0 1 N N N 18.839 -11.471 -16.184 -14.007 -3.529 1.856 H36 0L3 84 0L3 H37 H37 H 0 1 N N N 19.808 -11.872 -17.642 -14.714 -1.900 1.962 H37 0L3 85 0L3 H38 H38 H 0 1 N N N 20.358 -9.615 -18.051 -16.268 -2.453 0.110 H38 0L3 86 0L3 H39 H39 H 0 1 N N N 19.949 -9.115 -16.375 -15.560 -4.083 0.004 H39 0L3 87 0L3 H40 H40 H 0 1 N N N 17.563 -9.470 -16.814 -16.242 -4.532 2.345 H40 0L3 88 0L3 H41 H41 H 0 1 N N N 17.931 -10.091 -18.459 -16.949 -2.902 2.452 H41 0L3 89 0L3 H42 H42 H 0 1 N N N 17.374 -7.830 -18.456 -18.579 -4.542 1.851 H42 0L3 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0L3 O48 C47 SING N N 1 0L3 C47 C46 SING N N 2 0L3 C46 C45 SING N N 3 0L3 C45 C44 SING N N 4 0L3 C44 C43 SING N N 5 0L3 O1G PG DOUB N N 6 0L3 C43 C42 SING N N 7 0L3 O3G PG SING N N 8 0L3 C42 C41 SING N N 9 0L3 PG O2G SING N N 10 0L3 PG O3B SING N N 11 0L3 O2B PB DOUB N N 12 0L3 O2A PA DOUB N N 13 0L3 O3B PB SING N N 14 0L3 C41 C40 SING N N 15 0L3 PB O1B SING N N 16 0L3 PB O3A SING N N 17 0L3 C40 C39 SING N N 18 0L3 PA O3A SING N N 19 0L3 PA "O5'" SING N N 20 0L3 PA O1A SING N N 21 0L3 "C5'" "O5'" SING N N 22 0L3 "C5'" "C4'" SING N N 23 0L3 "O3'" "C3'" SING N N 24 0L3 "C4'" "C3'" SING N N 25 0L3 "C4'" "O4'" SING N N 26 0L3 C39 C37 SING N N 27 0L3 "C3'" "C2'" SING N N 28 0L3 "O4'" "C1'" SING N N 29 0L3 C37 N36 SING N N 30 0L3 C37 O38 DOUB N N 31 0L3 N36 C35 SING N N 32 0L3 "C2'" "C1'" SING N N 33 0L3 "C1'" N9 SING N N 34 0L3 C35 C34 SING N N 35 0L3 C8 N9 SING Y N 36 0L3 C8 C7 DOUB Y N 37 0L3 N9 C4 SING Y N 38 0L3 C34 C33 SING N N 39 0L3 C7 C31 SING N N 40 0L3 C7 C5 SING Y N 41 0L3 C31 C32 TRIP N N 42 0L3 C4 N3 DOUB Y N 43 0L3 C4 C5 SING Y N 44 0L3 C32 C33 SING N N 45 0L3 N3 C2 SING Y N 46 0L3 C5 C6 DOUB Y N 47 0L3 C2 N1 DOUB Y N 48 0L3 C6 N1 SING Y N 49 0L3 C6 N6 SING N N 50 0L3 O3G H1 SING N N 51 0L3 O2G H2 SING N N 52 0L3 O1B H3 SING N N 53 0L3 O1A H4 SING N N 54 0L3 "C5'" H5 SING N N 55 0L3 "C5'" H6 SING N N 56 0L3 "C4'" H7 SING N N 57 0L3 "C3'" H8 SING N N 58 0L3 "O3'" H9 SING N N 59 0L3 "C2'" H10 SING N N 60 0L3 "C2'" H11 SING N N 61 0L3 "C1'" H12 SING N N 62 0L3 C2 H13 SING N N 63 0L3 N6 H14 SING N N 64 0L3 N6 H15 SING N N 65 0L3 C8 H16 SING N N 66 0L3 C33 H17 SING N N 67 0L3 C33 H18 SING N N 68 0L3 C34 H19 SING N N 69 0L3 C34 H20 SING N N 70 0L3 C35 H21 SING N N 71 0L3 C35 H22 SING N N 72 0L3 N36 H23 SING N N 73 0L3 C39 H24 SING N N 74 0L3 C39 H25 SING N N 75 0L3 C40 H26 SING N N 76 0L3 C40 H27 SING N N 77 0L3 C41 H28 SING N N 78 0L3 C41 H29 SING N N 79 0L3 C42 H30 SING N N 80 0L3 C42 H31 SING N N 81 0L3 C43 H32 SING N N 82 0L3 C43 H33 SING N N 83 0L3 C44 H34 SING N N 84 0L3 C44 H35 SING N N 85 0L3 C45 H36 SING N N 86 0L3 C45 H37 SING N N 87 0L3 C46 H38 SING N N 88 0L3 C46 H39 SING N N 89 0L3 C47 H40 SING N N 90 0L3 C47 H41 SING N N 91 0L3 O48 H42 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0L3 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cc(C#CCCCNC(=O)CCCCCCCCCO)c1c(ncnc12)N)CC3O" 0L3 InChI InChI 1.03 ;InChI=1S/C26H42N5O14P3/c27-25-24-19(11-7-6-9-13-28-22(34)12-8-4-2-1-3-5-10-14-32)16-31(26(24)30-18-29-25)23-15-20(33)21(43-23)17-42-47(38,39)45-48(40,41)44-46(35,36)37/h16,18,20-21,23,32-33H,1-6,8-10,12-15,17H2,(H,28,34)(H,38,39)(H,40,41)(H2,27,29,30)(H2,35,36,37)/t20-,21+,23+/m0/s1 ; 0L3 InChIKey InChI 1.03 JQTQPUSSMXPQMW-QZNHQXDQSA-N 0L3 SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cc(C#CCCCNC(=O)CCCCCCCCCO)c12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 0L3 SMILES CACTVS 3.370 "Nc1ncnc2n(cc(C#CCCCNC(=O)CCCCCCCCCO)c12)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 0L3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c(ncnc2n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N)C#CCCCNC(=O)CCCCCCCCCO" 0L3 SMILES "OpenEye OEToolkits" 1.7.6 "c1c(c2c(ncnc2n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N)C#CCCCNC(=O)CCCCCCCCCO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0L3 "SYSTEMATIC NAME" ACDLabs 12.01 "7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 0L3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[4-azanyl-5-[5-(10-oxidanyldecanoylamino)pent-1-ynyl]pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0L3 "Create component" 2012-02-08 RCSB #