data_0L5 # _chem_comp.id 0L5 _chem_comp.name ;2'-deoxy-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}uridine 5'-(tetrahydrogen triphosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H40 N3 O16 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-02-08 _chem_comp.pdbx_modified_date 2012-05-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 719.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0L5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4DFK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0L5 O36 O36 O 0 1 N N N 22.546 -10.104 -4.458 8.587 -1.616 2.128 O36 DTX 1 0L5 C35 C35 C 0 1 N N N 21.558 -10.485 -3.844 7.987 -1.132 1.192 C35 DTX 2 0L5 C37 C37 C 0 1 N N N 21.045 -9.705 -2.646 8.690 -0.186 0.253 C37 DTX 3 0L5 C38 C38 C 0 1 N N N 20.681 -8.283 -3.077 10.142 -0.008 0.701 C38 DTX 4 0L5 C39 C39 C 0 1 N N N 20.936 -7.219 -2.000 10.856 0.951 -0.253 C39 DTX 5 0L5 C40 C40 C 0 1 N N N 20.075 -7.350 -0.749 12.309 1.129 0.196 C40 DTX 6 0L5 C41 C41 C 0 1 N N N 19.205 -6.115 -0.518 13.023 2.089 -0.758 C41 DTX 7 0L5 C42 C42 C 0 1 N N N 19.873 -4.810 -0.944 14.475 2.267 -0.310 C42 DTX 8 0L5 C43 C43 C 0 1 N N N 18.836 -3.695 -1.056 15.189 3.227 -1.264 C43 DTX 9 0L5 C44 C44 C 0 1 N N N 19.464 -2.368 -1.468 16.641 3.404 -0.815 C44 DTX 10 0L5 C45 C45 C 0 1 N N N 18.395 -1.354 -1.861 17.355 4.364 -1.769 C45 DTX 11 0L5 O46 O46 O 0 1 N N N 19.015 -0.127 -2.264 18.712 4.530 -1.350 O46 DTX 12 0L5 N34 N34 N 0 1 N N N 20.891 -11.587 -4.194 6.691 -1.444 0.989 N34 DTX 13 0L5 C33 C33 C 0 1 N N N 21.442 -12.574 -5.115 6.009 -2.367 1.899 C33 DTX 14 0L5 C32 C32 C 0 1 N N N 20.693 -12.681 -6.441 4.558 -2.549 1.447 C32 DTX 15 0L5 C31 C31 C 0 1 N N N 21.249 -13.795 -7.324 3.846 -3.514 2.397 C31 DTX 16 0L5 C30 C30 C 0 1 N N N 20.654 -15.107 -6.981 2.451 -3.689 1.963 C30 DTX 17 0L5 C29 C29 C 0 1 N N N 20.194 -16.179 -6.747 1.337 -3.829 1.617 C29 DTX 18 0L5 C5 C5 C 0 1 N N N 19.692 -17.349 -6.490 -0.020 -3.999 1.194 C5 DTX 19 0L5 C6 C6 C 0 1 N N N 19.406 -18.257 -7.497 -0.497 -3.352 0.090 C6 DTX 20 0L5 N1 N1 N 0 1 N N N 18.880 -19.462 -7.214 -1.796 -3.535 -0.287 N1 DTX 21 0L5 C2 C2 C 0 1 N N N 18.582 -19.802 -5.875 -2.618 -4.340 0.405 C2 DTX 22 0L5 O2 O2 O 0 1 N N N 18.086 -20.928 -5.626 -3.767 -4.473 0.031 O2 DTX 23 0L5 N3 N3 N 0 1 N N N 18.831 -18.947 -4.870 -2.207 -5.004 1.500 N3 DTX 24 0L5 C4 C4 C 0 1 N N N 19.365 -17.742 -5.096 -0.936 -4.880 1.934 C4 DTX 25 0L5 O4 O4 O 0 1 N N N 19.595 -16.962 -4.144 -0.556 -5.481 2.922 O4 DTX 26 0L5 "C1'" C1* C 0 1 N N R 18.568 -20.436 -8.286 -2.303 -2.839 -1.472 C1* DTX 27 0L5 "O4'" O4* O 0 1 N N N 19.452 -20.237 -9.396 -3.518 -2.126 -1.154 O4* DTX 28 0L5 "C4'" C4* C 0 1 N N R 18.705 -19.907 -10.582 -4.177 -1.913 -2.421 C4* DTX 29 0L5 "C3'" C3* C 0 1 N N S 17.384 -19.355 -10.071 -3.978 -3.234 -3.197 C3* DTX 30 0L5 "O3'" O3* O 0 1 N N N 16.296 -19.509 -11.006 -3.759 -2.971 -4.584 O3* DTX 31 0L5 "C2'" C2* C 0 1 N N N 17.158 -20.157 -8.800 -2.714 -3.857 -2.559 C2* DTX 32 0L5 "C5'" C5* C 0 1 N N N 19.465 -18.923 -11.473 -5.668 -1.642 -2.205 C5* DTX 33 0L5 "O5'" O5* O 0 1 N N N 19.704 -17.706 -10.766 -5.835 -0.363 -1.591 O5* DTX 34 0L5 PA PA P 0 1 N N N 19.524 -16.283 -11.495 -7.277 0.248 -1.217 PA DTX 35 0L5 O1A O1A O 0 1 N N N 20.202 -15.198 -10.689 -8.114 0.512 -2.567 O1A DTX 36 0L5 O2A O2A O 0 1 N N N 19.802 -16.381 -12.981 -8.012 -0.709 -0.360 O2A DTX 37 0L5 O3A O3A O 0 1 N N N 17.935 -16.090 -11.235 -7.083 1.637 -0.426 O3A DTX 38 0L5 PB PB P 0 1 N N N 16.735 -16.301 -12.310 -8.022 2.511 0.547 PB DTX 39 0L5 O1B O1B O 0 1 N N N 17.199 -17.095 -13.518 -9.408 2.506 0.028 O1B DTX 40 0L5 O2B O2B O 0 1 N N N 15.594 -16.850 -11.484 -8.000 1.877 2.026 O2B DTX 41 0L5 O3B O3B O 0 1 N N N 16.357 -14.760 -12.630 -7.475 4.024 0.603 O3B DTX 42 0L5 PG PG P 0 1 N N N 16.889 -13.830 -13.846 -8.097 5.420 1.112 PG DTX 43 0L5 O1G O1G O 0 1 N N N 15.662 -13.573 -14.679 -9.523 5.496 0.723 O1G DTX 44 0L5 O3G O3G O 0 1 N N N 17.399 -12.590 -13.146 -7.972 5.510 2.714 O3G DTX 45 0L5 O2G O2G O 0 1 N N N 17.992 -14.604 -14.555 -7.292 6.642 0.441 O2G DTX 46 0L5 H1 H1 H 0 1 N N N 20.153 -10.204 -2.239 8.669 -0.595 -0.757 H1 DTX 47 0L5 H2 H2 H 0 1 N N N 21.827 -9.664 -1.873 8.186 0.780 0.264 H2 DTX 48 0L5 H3 H3 H 0 1 N N N 21.279 -8.027 -3.964 10.163 0.400 1.711 H3 DTX 49 0L5 H4 H4 H 0 1 N N N 19.612 -8.263 -3.336 10.647 -0.975 0.689 H4 DTX 50 0L5 H5 H5 H 0 1 N N N 21.991 -7.286 -1.697 10.835 0.543 -1.263 H5 DTX 51 0L5 H6 H6 H 0 1 N N N 20.745 -6.231 -2.444 10.352 1.918 -0.241 H6 DTX 52 0L5 H7 H7 H 0 1 N N N 19.422 -8.228 -0.858 12.330 1.538 1.206 H7 DTX 53 0L5 H8 H8 H 0 1 N N N 20.733 -7.488 0.122 12.813 0.163 0.184 H8 DTX 54 0L5 H9 H9 H 0 1 N N N 18.969 -6.051 0.554 13.002 1.680 -1.768 H9 DTX 55 0L5 H10 H10 H 0 1 N N N 18.274 -6.233 -1.092 12.518 3.055 -0.747 H10 DTX 56 0L5 H11 H11 H 0 1 N N N 20.359 -4.953 -1.921 14.496 2.675 0.700 H11 DTX 57 0L5 H12 H12 H 0 1 N N N 20.629 -4.528 -0.196 14.979 1.301 -0.322 H12 DTX 58 0L5 H13 H13 H 0 1 N N N 18.345 -3.567 -0.080 15.168 2.818 -2.274 H13 DTX 59 0L5 H14 H14 H 0 1 N N N 18.087 -3.982 -1.808 14.684 4.193 -1.252 H14 DTX 60 0L5 H15 H15 H 0 1 N N N 20.131 -2.537 -2.326 16.662 3.813 0.195 H15 DTX 61 0L5 H16 H16 H 0 1 N N N 20.046 -1.968 -0.624 17.146 2.438 -0.827 H16 DTX 62 0L5 H17 H17 H 0 1 N N N 17.737 -1.165 -1.000 17.334 3.955 -2.779 H17 DTX 63 0L5 H18 H18 H 0 1 N N N 17.801 -1.754 -2.696 16.851 5.330 -1.757 H18 DTX 64 0L5 H19 H19 H 0 1 N N N 18.346 0.501 -2.508 19.226 5.127 -1.911 H19 DTX 65 0L5 H20 H20 H 0 1 N N N 19.980 -11.741 -3.811 6.211 -1.056 0.241 H20 DTX 66 0L5 H21 H21 H 0 1 N N N 21.415 -13.558 -4.623 6.517 -3.332 1.886 H21 DTX 67 0L5 H22 H22 H 0 1 N N N 22.486 -12.300 -5.330 6.027 -1.961 2.910 H22 DTX 68 0L5 H23 H23 H 0 1 N N N 20.782 -11.725 -6.977 4.050 -1.585 1.460 H23 DTX 69 0L5 H24 H24 H 0 1 N N N 19.633 -12.888 -6.234 4.541 -2.956 0.436 H24 DTX 70 0L5 H25 H25 H 0 1 N N N 22.339 -13.850 -7.186 4.354 -4.478 2.384 H25 DTX 71 0L5 H26 H26 H 0 1 N N N 21.023 -13.564 -8.376 3.864 -3.108 3.408 H26 DTX 72 0L5 H27 H27 H 0 1 N N N 19.609 -17.993 -8.524 0.149 -2.700 -0.480 H27 DTX 73 0L5 H28 H28 H 0 1 N N N 18.612 -19.217 -3.932 -2.827 -5.578 1.977 H28 DTX 74 0L5 H29 H29 H 0 1 N N N 18.631 -21.465 -7.904 -1.551 -2.153 -1.860 H29 DTX 75 0L5 H30 H30 H 0 1 N N N 18.504 -20.820 -11.161 -3.714 -1.084 -2.957 H30 DTX 76 0L5 H31 H31 H 0 1 N N N 17.513 -18.294 -9.810 -4.838 -3.889 -3.062 H31 DTX 77 0L5 H32 H32 H 0 1 N N N 15.502 -19.147 -10.631 -3.627 -3.766 -5.119 H32 DTX 78 0L5 H33 H33 H 0 1 N N N 16.582 -19.574 -8.066 -1.924 -3.965 -3.303 H33 DTX 79 0L5 H34 H34 H 0 1 N N N 16.628 -21.096 -9.019 -2.949 -4.821 -2.109 H34 DTX 80 0L5 H35 H35 H 0 1 N N N 18.868 -18.710 -12.372 -6.182 -1.654 -3.166 H35 DTX 81 0L5 H36 H36 H 0 1 N N N 20.427 -19.367 -11.768 -6.087 -2.413 -1.559 H36 DTX 82 0L5 H37 H37 H 0 1 N N N 20.756 -14.679 -11.260 -7.692 1.132 -3.177 H37 DTX 83 0L5 H38 H38 H 0 1 N N N 15.300 -17.673 -11.856 -7.121 1.848 2.429 H38 DTX 84 0L5 H39 H39 H 0 1 N N N 16.841 -11.852 -13.362 -7.063 5.466 3.041 H39 DTX 85 0L5 H40 H40 H 0 1 N N N 17.717 -14.807 -15.441 -7.613 7.516 0.703 H40 DTX 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0L5 O1G PG DOUB N N 1 0L5 O2G PG SING N N 2 0L5 PG O3G SING N N 3 0L5 PG O3B SING N N 4 0L5 O1B PB DOUB N N 5 0L5 O2A PA DOUB N N 6 0L5 O3B PB SING N N 7 0L5 PB O2B SING N N 8 0L5 PB O3A SING N N 9 0L5 PA O3A SING N N 10 0L5 PA "O5'" SING N N 11 0L5 PA O1A SING N N 12 0L5 "C5'" "O5'" SING N N 13 0L5 "C5'" "C4'" SING N N 14 0L5 "O3'" "C3'" SING N N 15 0L5 "C4'" "C3'" SING N N 16 0L5 "C4'" "O4'" SING N N 17 0L5 "C3'" "C2'" SING N N 18 0L5 "O4'" "C1'" SING N N 19 0L5 "C2'" "C1'" SING N N 20 0L5 "C1'" N1 SING N N 21 0L5 C6 N1 SING N N 22 0L5 C6 C5 DOUB N N 23 0L5 C31 C30 SING N N 24 0L5 C31 C32 SING N N 25 0L5 N1 C2 SING N N 26 0L5 C30 C29 TRIP N N 27 0L5 C29 C5 SING N N 28 0L5 C5 C4 SING N N 29 0L5 C32 C33 SING N N 30 0L5 C2 O2 DOUB N N 31 0L5 C2 N3 SING N N 32 0L5 C33 N34 SING N N 33 0L5 C4 N3 SING N N 34 0L5 C4 O4 DOUB N N 35 0L5 O36 C35 DOUB N N 36 0L5 N34 C35 SING N N 37 0L5 C35 C37 SING N N 38 0L5 C38 C37 SING N N 39 0L5 C38 C39 SING N N 40 0L5 O46 C45 SING N N 41 0L5 C39 C40 SING N N 42 0L5 C45 C44 SING N N 43 0L5 C44 C43 SING N N 44 0L5 C43 C42 SING N N 45 0L5 C42 C41 SING N N 46 0L5 C40 C41 SING N N 47 0L5 C37 H1 SING N N 48 0L5 C37 H2 SING N N 49 0L5 C38 H3 SING N N 50 0L5 C38 H4 SING N N 51 0L5 C39 H5 SING N N 52 0L5 C39 H6 SING N N 53 0L5 C40 H7 SING N N 54 0L5 C40 H8 SING N N 55 0L5 C41 H9 SING N N 56 0L5 C41 H10 SING N N 57 0L5 C42 H11 SING N N 58 0L5 C42 H12 SING N N 59 0L5 C43 H13 SING N N 60 0L5 C43 H14 SING N N 61 0L5 C44 H15 SING N N 62 0L5 C44 H16 SING N N 63 0L5 C45 H17 SING N N 64 0L5 C45 H18 SING N N 65 0L5 O46 H19 SING N N 66 0L5 N34 H20 SING N N 67 0L5 C33 H21 SING N N 68 0L5 C33 H22 SING N N 69 0L5 C32 H23 SING N N 70 0L5 C32 H24 SING N N 71 0L5 C31 H25 SING N N 72 0L5 C31 H26 SING N N 73 0L5 C6 H27 SING N N 74 0L5 N3 H28 SING N N 75 0L5 "C1'" H29 SING N N 76 0L5 "C4'" H30 SING N N 77 0L5 "C3'" H31 SING N N 78 0L5 "O3'" H32 SING N N 79 0L5 "C2'" H33 SING N N 80 0L5 "C2'" H34 SING N N 81 0L5 "C5'" H35 SING N N 82 0L5 "C5'" H36 SING N N 83 0L5 O1A H37 SING N N 84 0L5 O2B H38 SING N N 85 0L5 O3G H39 SING N N 86 0L5 O2G H40 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0L5 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(C#CCCCNC(=O)CCCCCCCCCO)=C1)CC2O" 0L5 InChI InChI 1.03 ;InChI=1S/C24H40N3O16P3/c28-14-10-5-3-1-2-4-8-12-21(30)25-13-9-6-7-11-18-16-27(24(32)26-23(18)31)22-15-19(29)20(41-22)17-40-45(36,37)43-46(38,39)42-44(33,34)35/h16,19-20,22,28-29H,1-6,8-10,12-15,17H2,(H,25,30)(H,36,37)(H,38,39)(H,26,31,32)(H2,33,34,35)/t19-,20+,22+/m0/s1 ; 0L5 InChIKey InChI 1.03 UGHLPDROZCTFGX-TUNNFDKTSA-N 0L5 SMILES_CANONICAL CACTVS 3.370 "OCCCCCCCCCC(=O)NCCCC#CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" 0L5 SMILES CACTVS 3.370 "OCCCCCCCCCC(=O)NCCCC#CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" 0L5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)C#CCCCNC(=O)CCCCCCCCCO)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 0L5 SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1N2C=C(C(=O)NC2=O)C#CCCCNC(=O)CCCCCCCCCO)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0L5 "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-5-{5-[(10-hydroxydecanoyl)amino]pent-1-yn-1-yl}uridine 5'-(tetrahydrogen triphosphate) ; 0L5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-3-oxidanyl-5-[5-[5-(10-oxidanyldecanoylamino)pent-1-ynyl]-2,4-bis(oxidanylidene)pyrimidin-1-yl]oxolan-2-yl]methyl [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0L5 "Create component" 2012-02-08 RCSB #