data_0L7 # _chem_comp.id 0L7 _chem_comp.name "2-amino-5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H24 N5 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-02-08 _chem_comp.pdbx_modified_date 2012-05-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 587.309 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0L7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4DFP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0L7 O6 O6 O 0 1 N N N 19.074 -17.533 -3.355 7.187 0.595 -1.813 O6 DGX 1 0L7 C6 C6 C 0 1 N N N 18.792 -18.548 -4.030 6.556 -0.436 -1.656 C6 DGX 2 0L7 N1 N1 N 0 1 N N N 18.247 -19.634 -3.440 7.023 -1.614 -2.127 N1 DGX 3 0L7 C2 C2 C 0 1 N N N 17.937 -20.738 -4.160 6.305 -2.758 -1.943 C2 DGX 4 0L7 N2 N2 N 0 1 N N N 17.391 -21.813 -3.546 6.802 -3.941 -2.430 N2 DGX 5 0L7 N3 N3 N 0 1 N N N 18.165 -20.787 -5.489 5.152 -2.765 -1.314 N3 DGX 6 0L7 C5 C5 C 0 1 Y N N 19.022 -18.584 -5.401 5.321 -0.431 -0.975 C5 DGX 7 0L7 C4 C4 C 0 1 Y N N 18.709 -19.726 -6.129 4.623 -1.635 -0.820 C4 DGX 8 0L7 C7 C7 C 0 1 Y N N 19.553 -17.746 -6.355 4.501 0.606 -0.335 C7 DGX 9 0L7 C32 C32 C 0 1 N N N 19.997 -16.502 -6.160 4.799 2.004 -0.248 C32 DGX 10 0L7 C33 C33 C 0 1 N N N 20.393 -15.403 -5.987 5.043 3.150 -0.176 C33 DGX 11 0L7 C34 C34 C 0 1 N N N 20.847 -14.010 -5.836 5.350 4.587 -0.087 C34 DGX 12 0L7 C35 C35 C 0 1 N N N 20.363 -13.384 -4.527 4.225 5.303 0.663 C35 DGX 13 0L7 C36 C36 C 0 1 N N N 21.076 -13.981 -3.319 4.544 6.797 0.756 C36 DGX 14 0L7 N37 N37 N 0 1 N N N 20.416 -15.206 -2.911 3.464 7.484 1.476 N37 DGX 15 0L7 C8 C8 C 0 1 Y N N 19.546 -18.309 -7.608 3.402 -0.024 0.157 C8 DGX 16 0L7 N9 N9 N 0 1 Y N N 19.038 -19.540 -7.422 3.471 -1.358 -0.140 N9 DGX 17 0L7 "C1'" C1* C 0 1 N N R 18.812 -20.532 -8.498 2.461 -2.351 0.232 C1* DGX 18 0L7 "C2'" C2* C 0 1 N N N 17.393 -20.287 -8.980 2.859 -3.033 1.556 C2* DGX 19 0L7 "C3'" C3* C 0 1 N N S 17.563 -19.604 -10.320 1.671 -2.744 2.504 C3* DGX 20 0L7 "O3'" O3* O 0 1 N N N 16.523 -20.007 -11.213 1.355 -3.894 3.292 O3* DGX 21 0L7 "O4'" O4* O 0 1 N N N 19.693 -20.282 -9.595 1.195 -1.704 0.445 O4* DGX 22 0L7 "C4'" C4* C 0 1 N N R 18.932 -20.073 -10.788 0.528 -2.426 1.506 C4* DGX 23 0L7 "C5'" C5* C 0 1 N N N 19.622 -19.045 -11.675 -0.537 -1.550 2.167 C5* DGX 24 0L7 "O5'" O5* O 0 1 N N N 19.881 -17.879 -10.901 -1.632 -1.369 1.266 O5* DGX 25 0L7 PA PA P 0 1 N N N 19.615 -16.415 -11.506 -2.935 -0.498 1.634 PA DGX 26 0L7 O1A O1A O 0 1 N N N 20.378 -15.416 -10.670 -3.728 -1.204 2.844 O1A DGX 27 0L7 O2A O2A O 0 1 N N N 19.754 -16.399 -13.011 -2.520 0.863 2.042 O2A DGX 28 0L7 O3A O3A O 0 1 N N N 18.067 -16.272 -11.102 -3.897 -0.402 0.346 O3A DGX 29 0L7 PB PB P 0 1 N N N 16.891 -16.371 -12.193 -5.082 0.595 -0.093 PB DGX 30 0L7 O1B O1B O 0 1 N N N 17.403 -17.073 -13.430 -5.915 0.920 1.086 O1B DGX 31 0L7 O2B O2B O 0 1 N N N 15.689 -16.934 -11.468 -4.450 1.949 -0.693 O2B DGX 32 0L7 O3B O3B O 0 1 N N N 16.646 -14.801 -12.463 -5.993 -0.115 -1.214 O3B DGX 33 0L7 PG PG P 0 1 N N N 16.974 -14.090 -13.871 -7.451 0.188 -1.827 PG DGX 34 0L7 O3G O3G O 0 1 N N N 15.667 -14.149 -14.621 -8.364 0.611 -0.741 O3G DGX 35 0L7 O2G O2G O 0 1 N N N 17.395 -12.700 -13.454 -7.340 1.361 -2.923 O2G DGX 36 0L7 O1G O1G O 0 1 N N N 18.093 -14.914 -14.469 -8.028 -1.145 -2.523 O1G DGX 37 0L7 H1 H1 H 0 1 N N N 18.070 -19.622 -2.456 7.872 -1.646 -2.596 H1 DGX 38 0L7 H2 H2 H 0 1 N N N 17.162 -22.629 -4.077 7.653 -3.953 -2.897 H2 DGX 39 0L7 H3 H3 H 0 1 N N N 17.216 -21.791 -2.562 6.304 -4.764 -2.308 H3 DGX 40 0L7 H4 H4 H 0 1 N N N 21.947 -13.992 -5.852 6.289 4.726 0.449 H4 DGX 41 0L7 H5 H5 H 0 1 N N N 20.458 -13.417 -6.677 5.440 5.003 -1.091 H5 DGX 42 0L7 H6 H6 H 0 1 N N N 20.557 -12.302 -4.556 3.286 5.165 0.127 H6 DGX 43 0L7 H7 H7 H 0 1 N N N 19.282 -13.560 -4.426 4.136 4.887 1.667 H7 DGX 44 0L7 H8 H8 H 0 1 N N N 22.121 -14.201 -3.584 5.483 6.935 1.292 H8 DGX 45 0L7 H9 H9 H 0 1 N N N 21.052 -13.260 -2.489 4.633 7.212 -0.248 H9 DGX 46 0L7 H10 H10 H 0 1 N N N 20.889 -15.592 -2.119 3.318 7.074 2.386 H10 DGX 47 0L7 H11 H11 H 0 1 N N N 19.466 -15.008 -2.669 3.651 8.472 1.551 H11 DGX 48 0L7 H13 H13 H 0 1 N N N 19.875 -17.863 -8.535 2.594 0.455 0.689 H13 DGX 49 0L7 H14 H14 H 0 1 N N N 18.916 -21.558 -8.116 2.367 -3.098 -0.556 H14 DGX 50 0L7 H15 H15 H 0 1 N N N 16.850 -19.637 -8.278 2.980 -4.106 1.411 H15 DGX 51 0L7 H16 H16 H 0 1 N N N 16.851 -21.237 -9.094 3.778 -2.596 1.948 H16 DGX 52 0L7 H17 H17 H 0 1 N N N 17.569 -18.512 -10.186 1.881 -1.885 3.141 H17 DGX 53 0L7 H18 H18 H 0 1 N N N 15.687 -19.696 -10.887 2.075 -4.186 3.868 H18 DGX 54 0L7 H19 H19 H 0 1 N N N 18.822 -21.015 -11.345 0.087 -3.346 1.122 H19 DGX 55 0L7 H20 H20 H 0 1 N N N 18.970 -18.790 -12.523 -0.892 -2.034 3.077 H20 DGX 56 0L7 H21 H21 H 0 1 N N N 20.569 -19.457 -12.052 -0.107 -0.580 2.416 H21 DGX 57 0L7 H22 H22 H 0 1 N N N 20.893 -14.855 -11.238 -4.030 -2.101 2.646 H22 DGX 58 0L7 H23 H23 H 0 1 N N N 15.386 -17.715 -11.915 -3.891 1.811 -1.470 H23 DGX 59 0L7 H24 H24 H 0 1 N N N 16.744 -12.071 -13.743 -6.757 1.152 -3.665 H24 DGX 60 0L7 H25 H25 H 0 1 N N N 18.010 -15.816 -14.183 -8.905 -1.036 -2.914 H25 DGX 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0L7 O3G PG DOUB N N 1 0L7 O1G PG SING N N 2 0L7 PG O2G SING N N 3 0L7 PG O3B SING N N 4 0L7 O1B PB DOUB N N 5 0L7 O2A PA DOUB N N 6 0L7 O3B PB SING N N 7 0L7 PB O2B SING N N 8 0L7 PB O3A SING N N 9 0L7 "C5'" "O5'" SING N N 10 0L7 "C5'" "C4'" SING N N 11 0L7 PA O3A SING N N 12 0L7 PA "O5'" SING N N 13 0L7 PA O1A SING N N 14 0L7 "O3'" "C3'" SING N N 15 0L7 "C4'" "C3'" SING N N 16 0L7 "C4'" "O4'" SING N N 17 0L7 "C3'" "C2'" SING N N 18 0L7 "O4'" "C1'" SING N N 19 0L7 "C2'" "C1'" SING N N 20 0L7 "C1'" N9 SING N N 21 0L7 C8 N9 SING Y N 22 0L7 C8 C7 DOUB Y N 23 0L7 N9 C4 SING Y N 24 0L7 C7 C32 SING N N 25 0L7 C7 C5 SING Y N 26 0L7 C32 C33 TRIP N N 27 0L7 C4 N3 SING N N 28 0L7 C4 C5 DOUB Y N 29 0L7 C33 C34 SING N N 30 0L7 C34 C35 SING N N 31 0L7 N3 C2 DOUB N N 32 0L7 C5 C6 SING N N 33 0L7 C35 C36 SING N N 34 0L7 C2 N2 SING N N 35 0L7 C2 N1 SING N N 36 0L7 C6 N1 SING N N 37 0L7 C6 O6 DOUB N N 38 0L7 C36 N37 SING N N 39 0L7 N1 H1 SING N N 40 0L7 N2 H2 SING N N 41 0L7 N2 H3 SING N N 42 0L7 C34 H4 SING N N 43 0L7 C34 H5 SING N N 44 0L7 C35 H6 SING N N 45 0L7 C35 H7 SING N N 46 0L7 C36 H8 SING N N 47 0L7 C36 H9 SING N N 48 0L7 N37 H10 SING N N 49 0L7 N37 H11 SING N N 50 0L7 C8 H13 SING N N 51 0L7 "C1'" H14 SING N N 52 0L7 "C2'" H15 SING N N 53 0L7 "C2'" H16 SING N N 54 0L7 "C3'" H17 SING N N 55 0L7 "O3'" H18 SING N N 56 0L7 "C4'" H19 SING N N 57 0L7 "C5'" H20 SING N N 58 0L7 "C5'" H21 SING N N 59 0L7 O1A H22 SING N N 60 0L7 O2B H23 SING N N 61 0L7 O2G H24 SING N N 62 0L7 O1G H25 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0L7 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2c1N=C(N)NC(=O)c1c(C#CCCCN)c2)CC3O" 0L7 InChI InChI 1.03 "InChI=1S/C16H24N5O13P3/c17-5-3-1-2-4-9-7-21(14-13(9)15(23)20-16(18)19-14)12-6-10(22)11(32-12)8-31-36(27,28)34-37(29,30)33-35(24,25)26/h7,10-12,22H,1,3,5-6,8,17H2,(H,27,28)(H,29,30)(H2,24,25,26)(H3,18,19,20,23)/t10-,11+,12+/m0/s1" 0L7 InChIKey InChI 1.03 XIWGGMXHUSVMFH-QJPTWQEYSA-N 0L7 SMILES_CANONICAL CACTVS 3.370 "NCCCC#Cc1cn([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)c3N=C(N)NC(=O)c13" 0L7 SMILES CACTVS 3.370 "NCCCC#Cc1cn([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)c3N=C(N)NC(=O)c13" 0L7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N)C#CCCCN" 0L7 SMILES "OpenEye OEToolkits" 1.7.6 "c1c(c2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N)C#CCCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0L7 "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one" 0L7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[2-azanyl-5-(5-azanylpent-1-ynyl)-4-oxidanylidene-3H-pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0L7 "Create component" 2012-02-08 RCSB #