data_0LI
#
_chem_comp.id 0LI
_chem_comp.name
;3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam
ide
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H27 F3 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Ponatinib
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-08-06
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 532.559
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0LI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3IK3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0LI N1 N1 N 0 1 Y N N 4.094 -7.340 13.892 -9.896 -0.371 -0.385 N1 0LI 1
0LI N3 N3 N 0 1 N N N 7.343 7.825 19.129 6.438 -1.243 -0.016 N3 0LI 2
0LI C4 C4 C 0 1 N N N 3.110 -2.662 13.914 -5.381 1.078 -0.489 C4 0LI 3
0LI C5 C5 C 0 1 Y N N 3.124 -1.217 13.748 -4.094 1.696 -0.596 C5 0LI 4
0LI C6 C6 C 0 1 Y N N 2.515 -0.547 12.613 -3.980 3.005 -1.075 C6 0LI 5
0LI C7 C7 C 0 1 Y N N 2.576 0.870 12.517 -2.739 3.600 -1.178 C7 0LI 6
0LI C8 C8 C 0 1 Y N N 3.249 1.649 13.552 -1.602 2.910 -0.809 C8 0LI 7
0LI C10 C10 C 0 1 Y N N 3.777 -0.467 14.751 -2.948 0.995 -0.215 C10 0LI 8
0LI C13 C13 C 0 1 Y N N 5.504 3.889 16.406 1.889 0.722 0.224 C13 0LI 9
0LI C15 C15 C 0 1 Y N N 6.149 6.189 17.002 3.101 -1.346 0.153 C15 0LI 10
0LI C17 C17 C 0 1 Y N N 7.482 4.291 17.886 4.131 0.615 1.070 C17 0LI 11
0LI C20 C20 C 0 1 N N N 8.114 6.776 18.492 5.440 -1.518 1.026 C20 0LI 12
0LI C21 C21 C 0 1 N N N 6.485 7.358 20.245 7.773 -1.695 0.401 C21 0LI 13
0LI C22 C22 C 0 1 N N N 5.598 8.519 20.760 8.795 -1.320 -0.675 C22 0LI 14
0LI C24 C24 C 0 1 N N N 8.236 8.913 19.614 6.051 -1.862 -1.292 C24 0LI 15
0LI C81 C81 C 0 1 Y N N 2.335 -8.423 15.347 -9.906 -2.715 0.492 C81 0LI 16
0LI C82 C82 C 0 1 Y N N 1.217 -8.107 16.118 -9.079 -3.701 0.942 C82 0LI 17
0LI C83 C83 C 0 1 Y N N 0.796 -6.738 16.213 -7.697 -3.489 0.997 C83 0LI 18
0LI N81 N81 N 0 1 Y N N 1.392 -5.697 15.611 -7.177 -2.350 0.621 N81 0LI 19
0LI N82 N82 N 0 1 Y N N 2.483 -6.066 14.867 -7.992 -1.315 0.154 N82 0LI 20
0LI C84 C84 C 0 1 Y N N 3.024 -7.378 14.677 -9.351 -1.487 0.086 C84 0LI 21
0LI C1 C1 C 0 1 Y N N 4.266 -6.004 13.563 -8.945 0.522 -0.627 C1 0LI 22
0LI C2 C2 C 0 1 Y N N 3.298 -5.245 14.144 -7.725 -0.045 -0.296 C2 0LI 23
0LI C3 C3 C 0 1 N N N 3.169 -3.856 14.026 -6.437 0.572 -0.402 C3 0LI 24
0LI C9 C9 C 0 1 Y N N 3.854 0.963 14.680 -1.699 1.601 -0.328 C9 0LI 25
0LI C11 C11 C 0 1 N N N 1.808 -1.336 11.501 -5.216 3.767 -1.481 C11 0LI 26
0LI C12 C12 C 0 1 N N N 4.561 1.671 15.778 -0.479 0.865 0.067 C12 0LI 27
0LI O1 O1 O 0 1 N N N 5.070 1.013 16.693 -0.565 -0.273 0.485 O1 0LI 28
0LI N2 N2 N 0 1 N N N 4.599 3.033 15.704 0.728 1.455 -0.038 N2 0LI 29
0LI C14 C14 C 0 1 Y N N 5.289 5.281 16.321 1.952 -0.625 -0.108 C14 0LI 30
0LI C16 C16 C 0 1 Y N N 7.243 5.725 17.785 4.188 -0.728 0.743 C16 0LI 31
0LI C18 C18 C 0 1 Y N N 6.602 3.400 17.189 2.985 1.341 0.812 C18 0LI 32
0LI C19 C19 C 0 1 N N N 8.622 3.701 18.702 5.318 1.284 1.714 C19 0LI 33
0LI F1 F1 F 0 1 N N N 8.421 3.953 19.986 4.988 2.603 2.042 F1 0LI 34
0LI F2 F2 F 0 1 N N N 8.705 2.381 18.578 5.672 0.589 2.875 F2 0LI 35
0LI F3 F3 F 0 1 N N N 9.794 4.235 18.291 6.395 1.281 0.821 F3 0LI 36
0LI C23 C23 C 0 1 N N N 7.382 10.100 20.103 7.073 -1.487 -2.368 C23 0LI 37
0LI C25 C25 C 0 1 N N N 5.569 10.809 21.578 9.406 -1.664 -2.993 C25 0LI 38
0LI N4 N4 N 0 1 N N N 6.422 9.688 21.171 8.408 -1.939 -1.951 N4 0LI 39
0LI H7 H7 H 0 1 N N N 2.123 1.372 11.675 -2.657 4.611 -1.550 H7 0LI 40
0LI H8 H8 H 0 1 N N N 3.297 2.726 13.480 -0.634 3.382 -0.893 H8 0LI 41
0LI H10 H10 H 0 1 N N N 4.227 -0.981 15.588 -3.029 -0.015 0.160 H10 0LI 42
0LI H15 H15 H 0 1 N N N 5.967 7.251 16.923 3.151 -2.394 -0.105 H15 0LI 43
0LI H20 H20 H 0 1 N N N 8.780 7.236 17.747 5.204 -2.582 1.032 H20 0LI 44
0LI H20A H20A H 0 0 N N N 8.717 6.270 19.260 5.840 -1.229 1.998 H20A 0LI 45
0LI H21 H21 H 0 1 N N N 5.842 6.539 19.891 8.042 -1.214 1.341 H21 0LI 46
0LI H21A H21A H 0 0 N N N 7.122 6.996 21.066 7.766 -2.777 0.535 H21A 0LI 47
0LI H22 H22 H 0 1 N N N 4.912 8.829 19.958 8.822 -0.237 -0.790 H22 0LI 48
0LI H22A H22A H 0 0 N N N 5.016 8.169 21.625 9.781 -1.680 -0.381 H22A 0LI 49
0LI H24 H24 H 0 1 N N N 8.853 8.538 20.444 6.024 -2.946 -1.177 H24 0LI 50
0LI H24A H24A H 0 0 N N N 8.889 9.245 18.793 5.065 -1.502 -1.586 H24A 0LI 51
0LI H81 H81 H 0 1 N N N 2.671 -9.446 15.261 -10.973 -2.874 0.448 H81 0LI 52
0LI H82 H82 H 0 1 N N N 0.674 -8.883 16.637 -9.492 -4.648 1.256 H82 0LI 53
0LI H83 H83 H 0 1 N N N -0.073 -6.528 16.819 -7.051 -4.277 1.356 H83 0LI 54
0LI H1 H1 H 0 1 N N N 5.056 -5.620 12.935 -9.095 1.518 -1.016 H1 0LI 55
0LI H11 H11 H 0 1 N N N 0.744 -1.454 11.754 -5.607 4.310 -0.620 H11 0LI 56
0LI H11A H11A H 0 0 N N N 1.901 -0.792 10.550 -4.964 4.473 -2.272 H11A 0LI 57
0LI H11B H11B H 0 0 N N N 2.273 -2.328 11.403 -5.970 3.069 -1.844 H11B 0LI 58
0LI HN2 HN2 H 0 1 N N N 3.932 3.473 15.103 0.790 2.388 -0.295 HN2 0LI 59
0LI H14 H14 H 0 1 N N N 4.465 5.661 15.735 1.103 -1.108 -0.568 H14 0LI 60
0LI H18 H18 H 0 1 N N N 6.770 2.335 17.255 2.941 2.390 1.067 H18 0LI 61
0LI H23 H23 H 0 1 N N N 8.049 10.878 20.504 6.804 -1.969 -3.308 H23 0LI 62
0LI H23A H23A H 0 0 N N N 6.816 10.506 19.252 7.080 -0.406 -2.502 H23A 0LI 63
0LI H25 H25 H 0 1 N N N 6.199 11.660 21.877 10.371 -2.069 -2.687 H25 0LI 64
0LI H25A H25A H 0 0 N N N 4.927 11.106 20.735 9.095 -2.134 -3.927 H25A 0LI 65
0LI H25B H25B H 0 0 N N N 4.941 10.502 22.427 9.493 -0.588 -3.139 H25B 0LI 66
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0LI N1 C84 DOUB Y N 1
0LI N1 C1 SING Y N 2
0LI N3 C20 SING N N 3
0LI N3 C21 SING N N 4
0LI N3 C24 SING N N 5
0LI C4 C5 SING N N 6
0LI C4 C3 TRIP N N 7
0LI C5 C6 DOUB Y N 8
0LI C5 C10 SING Y N 9
0LI C6 C7 SING Y N 10
0LI C6 C11 SING N N 11
0LI C7 C8 DOUB Y N 12
0LI C7 H7 SING N N 13
0LI C8 C9 SING Y N 14
0LI C8 H8 SING N N 15
0LI C10 C9 DOUB Y N 16
0LI C10 H10 SING N N 17
0LI C13 N2 SING N N 18
0LI C13 C14 DOUB Y N 19
0LI C13 C18 SING Y N 20
0LI C15 C14 SING Y N 21
0LI C15 C16 DOUB Y N 22
0LI C15 H15 SING N N 23
0LI C17 C16 SING Y N 24
0LI C17 C18 DOUB Y N 25
0LI C17 C19 SING N N 26
0LI C20 C16 SING N N 27
0LI C20 H20 SING N N 28
0LI C20 H20A SING N N 29
0LI C21 C22 SING N N 30
0LI C21 H21 SING N N 31
0LI C21 H21A SING N N 32
0LI C22 N4 SING N N 33
0LI C22 H22 SING N N 34
0LI C22 H22A SING N N 35
0LI C24 C23 SING N N 36
0LI C24 H24 SING N N 37
0LI C24 H24A SING N N 38
0LI C81 C82 DOUB Y N 39
0LI C81 C84 SING Y N 40
0LI C81 H81 SING N N 41
0LI C82 C83 SING Y N 42
0LI C82 H82 SING N N 43
0LI C83 N81 DOUB Y N 44
0LI C83 H83 SING N N 45
0LI N81 N82 SING Y N 46
0LI N82 C84 SING Y N 47
0LI N82 C2 SING Y N 48
0LI C1 C2 DOUB Y N 49
0LI C1 H1 SING N N 50
0LI C2 C3 SING N N 51
0LI C9 C12 SING N N 52
0LI C11 H11 SING N N 53
0LI C11 H11A SING N N 54
0LI C11 H11B SING N N 55
0LI C12 O1 DOUB N N 56
0LI C12 N2 SING N N 57
0LI N2 HN2 SING N N 58
0LI C14 H14 SING N N 59
0LI C18 H18 SING N N 60
0LI C19 F1 SING N N 61
0LI C19 F2 SING N N 62
0LI C19 F3 SING N N 63
0LI C23 N4 SING N N 64
0LI C23 H23 SING N N 65
0LI C23 H23A SING N N 66
0LI C25 N4 SING N N 67
0LI C25 H25 SING N N 68
0LI C25 H25A SING N N 69
0LI C25 H25B SING N N 70
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0LI SMILES ACDLabs 12.01 "FC(F)(F)c1cc(ccc1CN2CCN(C)CC2)NC(=O)c5cc(C#Cc3cnc4cccnn34)c(cc5)C"
0LI InChI InChI 1.03 "InChI=1S/C29H27F3N6O/c1-20-5-6-22(16-21(20)8-10-25-18-33-27-4-3-11-34-38(25)27)28(39)35-24-9-7-23(26(17-24)29(30,31)32)19-37-14-12-36(2)13-15-37/h3-7,9,11,16-18H,12-15,19H2,1-2H3,(H,35,39)"
0LI InChIKey InChI 1.03 PHXJVRSECIGDHY-UHFFFAOYSA-N
0LI SMILES_CANONICAL CACTVS 3.370 "CN1CCN(CC1)Cc2ccc(NC(=O)c3ccc(C)c(c3)C#Cc4cnc5cccnn45)cc2C(F)(F)F"
0LI SMILES CACTVS 3.370 "CN1CCN(CC1)Cc2ccc(NC(=O)c3ccc(C)c(c3)C#Cc4cnc5cccnn45)cc2C(F)(F)F"
0LI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1ccc(cc1C#Cc2cnc3n2nccc3)C(=O)Nc4ccc(c(c4)C(F)(F)F)CN5CCN(CC5)C"
0LI SMILES "OpenEye OEToolkits" 1.7.6 "Cc1ccc(cc1C#Cc2cnc3n2nccc3)C(=O)Nc4ccc(c(c4)C(F)(F)F)CN5CCN(CC5)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0LI "SYSTEMATIC NAME" ACDLabs 12.01 "3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzamide"
0LI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-(2-imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-[4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]benzamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0LI "Create component" 2009-08-06 RCSB
0LI "Modify descriptor" 2011-06-04 RCSB
0LI "Modify synonyms" 2012-02-25 RCSB
0LI "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0LI
_pdbx_chem_comp_synonyms.name Ponatinib
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##