data_0N2 # _chem_comp.id 0N2 _chem_comp.name "(2R,4S,5R,6R)-4-amino-5-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H27 N3 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-03-12 _chem_comp.pdbx_modified_date 2012-05-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 531.345 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0N2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4E33 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0N2 O41 O41 O 0 1 N N N 27.661 7.248 -7.336 7.336 -3.657 -1.421 O41 0N2 1 0N2 C41 C41 C 0 1 N N N 26.848 7.382 -6.390 6.769 -2.792 -0.777 C41 0N2 2 0N2 C51 C51 C 0 1 N N N 26.441 8.610 -5.861 6.619 -2.928 0.624 C51 0N2 3 0N2 C5A C5A C 0 1 N N N 26.958 9.937 -6.375 7.159 -4.142 1.335 C5A 0N2 4 0N2 C61 C61 C 0 1 N N N 25.508 8.539 -4.834 5.987 -1.955 1.314 C61 0N2 5 0N2 N31 N31 N 0 1 N N N 26.297 6.240 -5.935 6.284 -1.694 -1.392 N31 0N2 6 0N2 C21 C21 C 0 1 N N N 25.452 6.218 -4.881 5.658 -0.739 -0.679 C21 0N2 7 0N2 O21 O21 O 0 1 N N N 25.030 5.119 -4.478 5.225 0.245 -1.246 O21 0N2 8 0N2 N11 N11 N 0 1 N N N 25.043 7.378 -4.333 5.504 -0.859 0.652 N11 0N2 9 0N2 C1X C1X C 0 1 N N R 24.092 7.298 -3.216 4.817 0.196 1.401 C1X 0N2 10 0N2 O4X O4X O 0 1 N N N 22.935 8.049 -3.578 3.535 0.461 0.808 O4X 0N2 11 0N2 C2X C2X C 0 1 N N N 24.653 8.076 -2.015 5.632 1.503 1.332 C2X 0N2 12 0N2 C3X C3X C 0 1 N N S 23.450 8.701 -1.325 4.659 2.524 0.694 C3X 0N2 13 0N2 O3X O3X O 0 1 N N N 22.868 7.792 -0.370 4.760 3.795 1.338 O3X 0N2 14 0N2 C4X C4X C 0 1 N N R 22.520 8.902 -2.511 3.279 1.873 0.969 C4X 0N2 15 0N2 C5X C5X C 0 1 N N N 22.572 10.304 -3.097 2.244 2.353 -0.050 C5X 0N2 16 0N2 O5X O5X O 0 1 N N N 21.956 11.239 -2.193 0.981 1.748 0.233 O5X 0N2 17 0N2 P P P 0 1 N N N 21.925 12.777 -2.679 -0.341 2.029 -0.643 P 0N2 18 0N2 O1P O1P O 0 1 N N N 23.348 13.312 -2.638 -0.768 3.574 -0.490 O1P 0N2 19 0N2 O2P O2P O 0 1 N N N 21.117 12.829 -3.958 -0.063 1.732 -2.066 O2P 0N2 20 0N2 OPP OPP O 0 1 N N N 21.214 13.405 -1.371 -1.539 1.087 -0.122 OPP 0N2 21 0N2 P2 P2 P 0 1 N N N 19.798 13.096 -0.649 -2.922 0.578 -0.769 P2 0N2 22 0N2 O3P O3P O 0 1 N N N 18.607 13.212 -1.543 -3.548 1.683 -1.529 O3P 0N2 23 0N2 O4P O4P O 0 1 N N N 19.806 11.812 0.166 -2.629 -0.656 -1.760 O4P 0N2 24 0N2 O1 O1 O 0 1 N N N 19.655 14.325 0.371 -3.918 0.100 0.402 O1 0N2 25 0N2 C1 C1 C 0 1 N N R 20.781 14.405 1.240 -5.266 -0.310 0.159 C1 0N2 26 0N2 C2 C2 C 0 1 N N N 20.249 14.896 2.584 -6.127 0.015 1.383 C2 0N2 27 0N2 C3 C3 C 0 1 N N S 20.024 16.410 2.566 -7.555 -0.481 1.139 C3 0N2 28 0N2 N3 N3 N 0 1 N N N 18.928 16.817 3.440 -8.370 -0.241 2.337 N3 0N2 29 0N2 C4 C4 C 0 1 N N R 19.906 16.972 1.142 -7.518 -1.982 0.836 C4 0N2 30 0N2 O4 O4 O 0 1 N N N 19.682 18.389 1.043 -8.837 -2.441 0.537 O4 0N2 31 0N2 C5 C5 C 0 1 N N R 21.169 16.630 0.353 -6.603 -2.230 -0.366 C5 0N2 32 0N2 O5 O5 O 0 1 N N N 21.721 15.381 0.791 -5.299 -1.717 -0.085 O5 0N2 33 0N2 C6 C6 C 0 1 N N N 22.312 17.623 0.534 -7.175 -1.522 -1.597 C6 0N2 34 0N2 H1 H1 H 0 1 N N N 26.496 10.757 -5.806 7.631 -4.807 0.612 H1 0N2 35 0N2 H2 H2 H 0 1 N N N 28.051 9.977 -6.253 7.894 -3.831 2.078 H2 0N2 36 0N2 H3 H3 H 0 1 N N N 26.704 10.042 -7.440 6.341 -4.666 1.831 H3 0N2 37 0N2 H4 H4 H 0 1 N N N 25.136 9.463 -4.415 5.863 -2.042 2.383 H4 0N2 38 0N2 H5 H5 H 0 1 N N N 26.521 5.380 -6.393 6.387 -1.592 -2.351 H5 0N2 39 0N2 H6 H6 H 0 1 N N N 23.859 6.258 -2.942 4.692 -0.108 2.440 H6 0N2 40 0N2 H7 H7 H 0 1 N N N 25.177 7.395 -1.328 5.921 1.825 2.333 H7 0N2 41 0N2 H8 H8 H 0 1 N N N 25.347 8.858 -2.356 6.512 1.370 0.704 H8 0N2 42 0N2 H9 H9 H 0 1 N N N 23.717 9.665 -0.868 4.839 2.616 -0.377 H9 0N2 43 0N2 H10 H10 H 0 1 N N N 23.462 7.679 0.363 5.635 4.202 1.270 H10 0N2 44 0N2 H11 H11 H 0 1 N N N 21.488 8.671 -2.208 2.948 2.090 1.985 H11 0N2 45 0N2 H12 H12 H 0 1 N N N 23.621 10.592 -3.260 2.150 3.437 0.010 H12 0N2 46 0N2 H13 H13 H 0 1 N N N 22.035 10.318 -4.057 2.565 2.072 -1.053 H13 0N2 47 0N2 H14 H14 H 0 1 N N N 23.586 13.646 -3.495 -0.966 3.839 0.418 H14 0N2 48 0N2 H15 H15 H 0 1 N N N 19.034 11.299 -0.043 -2.218 -1.418 -1.329 H15 0N2 49 0N2 H16 H16 H 0 1 N N N 21.258 13.422 1.366 -5.655 0.220 -0.710 H16 0N2 50 0N2 H17 H17 H 0 1 N N N 19.294 14.393 2.798 -5.714 -0.481 2.261 H17 0N2 51 0N2 H18 H18 H 0 1 N N N 20.978 14.650 3.371 -6.137 1.093 1.545 H18 0N2 52 0N2 H19 H19 H 0 1 N N N 20.939 16.853 2.985 -7.987 0.053 0.292 H19 0N2 53 0N2 H20 H20 H 0 1 N N N 19.061 16.421 4.349 -8.404 0.742 2.561 H20 0N2 54 0N2 H21 H21 H 0 1 N N N 18.911 17.814 3.510 -9.299 -0.618 2.224 H21 0N2 55 0N2 H23 H23 H 0 1 N N N 19.067 16.453 0.656 -7.133 -2.519 1.703 H23 0N2 56 0N2 H24 H24 H 0 1 N N N 18.899 18.621 1.529 -8.889 -3.386 0.335 H24 0N2 57 0N2 H25 H25 H 0 1 N N N 20.914 16.575 -0.716 -6.539 -3.300 -0.560 H25 0N2 58 0N2 H26 H26 H 0 1 N N N 21.982 18.624 0.220 -6.523 -1.698 -2.452 H26 0N2 59 0N2 H27 H27 H 0 1 N N N 22.610 17.650 1.593 -8.169 -1.913 -1.811 H27 0N2 60 0N2 H28 H28 H 0 1 N N N 23.169 17.311 -0.080 -7.239 -0.451 -1.403 H28 0N2 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0N2 O41 C41 DOUB N N 1 0N2 C41 N31 SING N N 2 0N2 C41 C51 SING N N 3 0N2 C5A C51 SING N N 4 0N2 N31 C21 SING N N 5 0N2 C51 C61 DOUB N N 6 0N2 C21 O21 DOUB N N 7 0N2 C21 N11 SING N N 8 0N2 C61 N11 SING N N 9 0N2 N11 C1X SING N N 10 0N2 O2P P DOUB N N 11 0N2 O4X C1X SING N N 12 0N2 O4X C4X SING N N 13 0N2 C1X C2X SING N N 14 0N2 C5X C4X SING N N 15 0N2 C5X O5X SING N N 16 0N2 P O1P SING N N 17 0N2 P O5X SING N N 18 0N2 P OPP SING N N 19 0N2 C4X C3X SING N N 20 0N2 C2X C3X SING N N 21 0N2 O3P P2 DOUB N N 22 0N2 OPP P2 SING N N 23 0N2 C3X O3X SING N N 24 0N2 P2 O4P SING N N 25 0N2 P2 O1 SING N N 26 0N2 C5 C6 SING N N 27 0N2 C5 O5 SING N N 28 0N2 C5 C4 SING N N 29 0N2 O1 C1 SING N N 30 0N2 O5 C1 SING N N 31 0N2 O4 C4 SING N N 32 0N2 C4 C3 SING N N 33 0N2 C1 C2 SING N N 34 0N2 C3 C2 SING N N 35 0N2 C3 N3 SING N N 36 0N2 C5A H1 SING N N 37 0N2 C5A H2 SING N N 38 0N2 C5A H3 SING N N 39 0N2 C61 H4 SING N N 40 0N2 N31 H5 SING N N 41 0N2 C1X H6 SING N N 42 0N2 C2X H7 SING N N 43 0N2 C2X H8 SING N N 44 0N2 C3X H9 SING N N 45 0N2 O3X H10 SING N N 46 0N2 C4X H11 SING N N 47 0N2 C5X H12 SING N N 48 0N2 C5X H13 SING N N 49 0N2 O1P H14 SING N N 50 0N2 O4P H15 SING N N 51 0N2 C1 H16 SING N N 52 0N2 C2 H17 SING N N 53 0N2 C2 H18 SING N N 54 0N2 C3 H19 SING N N 55 0N2 N3 H20 SING N N 56 0N2 N3 H21 SING N N 57 0N2 C4 H23 SING N N 58 0N2 O4 H24 SING N N 59 0N2 C5 H25 SING N N 60 0N2 C6 H26 SING N N 61 0N2 C6 H27 SING N N 62 0N2 C6 H28 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0N2 SMILES ACDLabs 12.01 "O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(O)C(N)C3)C)O)O)C" 0N2 InChI InChI 1.03 "InChI=1S/C16H27N3O13P2/c1-7-5-19(16(23)18-15(7)22)12-4-10(20)11(30-12)6-28-33(24,25)32-34(26,27)31-13-3-9(17)14(21)8(2)29-13/h5,8-14,20-21H,3-4,6,17H2,1-2H3,(H,24,25)(H,26,27)(H,18,22,23)/t8-,9+,10+,11-,12-,13-,14+/m1/s1" 0N2 InChIKey InChI 1.03 CEQVCLWWGAYCPR-RIBQXPMZSA-N 0N2 SMILES_CANONICAL CACTVS 3.370 "C[C@H]1O[C@@H](C[C@H](N)[C@H]1O)O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O" 0N2 SMILES CACTVS 3.370 "C[CH]1O[CH](C[CH](N)[CH]1O)O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O" 0N2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@@H]([C@H](C[C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)N)O" 0N2 SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(CC(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0N2 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,4S,5R,6R)-4-amino-5-hydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 0N2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,4S,5R,6R)-4-azanyl-6-methyl-5-oxidanyl-oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0N2 "Create component" 2012-03-12 RCSB 0N2 "Modify atom id" 2012-05-16 RCSB #