data_0OD # _chem_comp.id 0OD _chem_comp.name "trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H32 Cl3 N3 O2 Rh S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[Cp*(Biot-methylene)RhCl(H2O)2]+" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2012-08-21 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 599.827 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0OD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GJS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0OD CL1 CL1 CL 0 0 N Y N 9.330 -2.623 -4.252 9.330 -2.623 -4.252 CL1 0OD 1 0OD RH RH RH 1 0 N N N 8.457 -4.121 -5.919 8.457 -4.121 -5.919 RH 0OD 2 0OD C1 C1 C 0 1 N N N 15.637 -9.296 -14.250 15.637 -9.296 -14.250 C1 0OD 3 0OD N1 N1 N 0 1 N N N 15.194 -8.535 -15.113 15.194 -8.535 -15.113 N1 0OD 4 0OD O1 O1 O 0 1 N N N 16.505 -10.133 -14.480 16.505 -10.133 -14.480 O1 0OD 5 0OD S1 S1 S 0 1 N N N 12.000 -9.353 -14.025 12.000 -9.353 -14.025 S1 0OD 6 0OD C2 C2 C 0 1 N N R 14.028 -7.557 -14.444 14.028 -7.557 -14.444 C2 0OD 7 0OD N2 N2 N 0 1 N N N 15.058 -9.097 -13.045 15.058 -9.097 -13.045 N2 0OD 8 0OD O2 O2 O 0 1 N N N 9.948 -8.889 -7.611 9.948 -8.889 -7.611 O2 0OD 9 0OD C3 C3 C 0 1 N N N 12.543 -7.918 -14.936 12.543 -7.918 -14.936 C3 0OD 10 0OD N3 N3 N 0 1 N N N 7.858 -9.093 -8.611 7.858 -9.093 -8.611 N3 0OD 11 0OD C4 C4 C 0 1 N N S 13.995 -7.956 -12.964 13.995 -7.956 -12.964 C4 0OD 12 0OD C5 C5 C 0 1 N N S 12.656 -8.484 -12.547 12.656 -8.484 -12.547 C5 0OD 13 0OD C6 C6 C 0 1 N N N 12.713 -9.386 -11.299 12.713 -9.386 -11.299 C6 0OD 14 0OD C7 C7 C 0 1 N N N 11.310 -9.635 -10.812 11.310 -9.635 -10.812 C7 0OD 15 0OD C8 C8 C 0 1 N N N 11.265 -10.522 -9.598 11.265 -10.522 -9.598 C8 0OD 16 0OD C9 C9 C 0 1 N N N 9.708 -10.783 -9.200 9.708 -10.783 -9.200 C9 0OD 17 0OD C10 C10 C 0 1 N N N 9.163 -9.529 -8.428 9.163 -9.529 -8.428 C10 0OD 18 0OD C11 C11 C 0 1 N N N 7.467 -8.135 -7.506 7.467 -8.135 -7.506 C11 0OD 19 0OD C12 C12 C 0 1 N N N 7.974 -6.729 -7.735 7.974 -6.729 -7.735 C12 0OD 20 0OD C13 C13 C 0 1 N N N 7.440 -5.808 -6.666 7.440 -5.808 -6.666 C13 0OD 21 0OD C14 C14 C 0 1 N N N 6.675 -4.634 -6.852 6.675 -4.634 -6.852 C14 0OD 22 0OD C15 C15 C 0 1 N N N 6.388 -4.065 -5.586 6.388 -4.065 -5.586 C15 0OD 23 0OD C16 C16 C 0 1 N N N 6.971 -4.890 -4.612 6.971 -4.890 -4.612 C16 0OD 24 0OD C17 C17 C 0 1 N N S 7.635 -5.937 -5.279 7.635 -5.937 -5.279 C17 0OD 25 0OD C18 C18 C 0 1 N N N 6.214 -4.088 -8.169 6.214 -4.088 -8.169 C18 0OD 26 0OD C19 C19 C 0 1 N N N 5.581 -2.827 -5.325 5.581 -2.827 -5.325 C19 0OD 27 0OD C20 C20 C 0 1 N N N 6.941 -4.667 -3.128 6.941 -4.667 -3.128 C20 0OD 28 0OD C21 C21 C 0 1 N N N 8.390 -7.046 -4.606 8.390 -7.046 -4.606 C21 0OD 29 0OD H1 H1 H 0 1 N N N 15.490 -8.510 -16.068 15.490 -8.510 -16.068 H1 0OD 30 0OD H2 H2 H 0 1 N N N 14.265 -6.494 -14.598 14.265 -6.494 -14.598 H2 0OD 31 0OD H3 H3 H 0 1 N N N 15.298 -9.651 -12.248 15.298 -9.651 -12.248 H3 0OD 32 0OD H4 H4 H 0 1 N N N 11.868 -7.072 -14.739 11.868 -7.072 -14.739 H4 0OD 33 0OD H5 H5 H 0 1 N N N 12.549 -8.139 -16.014 12.549 -8.139 -16.014 H5 0OD 34 0OD H6 H6 H 0 1 N N N 7.262 -9.372 -9.364 7.262 -9.372 -9.364 H6 0OD 35 0OD H7 H7 H 0 1 N N N 14.339 -7.137 -12.315 14.339 -7.137 -12.315 H7 0OD 36 0OD H8 H8 H 0 1 N N N 11.969 -7.647 -12.357 11.969 -7.647 -12.357 H8 0OD 37 0OD H9 H9 H 0 1 N N N 13.190 -10.343 -11.557 13.190 -10.343 -11.557 H9 0OD 38 0OD H10 H10 H 0 1 N N N 13.295 -8.888 -10.510 13.295 -8.888 -10.510 H10 0OD 39 0OD H11 H11 H 0 1 N N N 10.849 -8.669 -10.559 10.849 -8.669 -10.559 H11 0OD 40 0OD H12 H12 H 0 1 N N N 10.737 -10.115 -11.619 10.737 -10.115 -11.620 H12 0OD 41 0OD H13 H13 H 0 1 N N N 11.756 -11.481 -9.822 11.756 -11.481 -9.822 H13 0OD 42 0OD H14 H14 H 0 1 N N N 11.784 -10.031 -8.761 11.784 -10.031 -8.761 H14 0OD 43 0OD H15 H15 H 0 1 N N N 9.115 -10.941 -10.113 9.115 -10.941 -10.113 H15 0OD 44 0OD H16 H16 H 0 1 N N N 9.635 -11.673 -8.557 9.635 -11.673 -8.557 H16 0OD 45 0OD H17 H17 H 0 1 N N N 6.369 -8.105 -7.440 6.369 -8.105 -7.440 H17 0OD 46 0OD H18 H18 H 0 1 N N N 7.881 -8.507 -6.557 7.881 -8.507 -6.557 H18 0OD 47 0OD H19 H19 H 0 1 N N N 9.073 -6.728 -7.701 9.073 -6.728 -7.701 H19 0OD 48 0OD H20 H20 H 0 1 N N N 7.637 -6.376 -8.721 7.637 -6.376 -8.721 H20 0OD 49 0OD H21 H21 H 0 1 N N N 5.639 -3.165 -8.003 5.639 -3.165 -8.003 H21 0OD 50 0OD H22 H22 H 0 1 N N N 7.087 -3.867 -8.800 7.087 -3.867 -8.800 H22 0OD 51 0OD H23 H23 H 0 1 N N N 5.577 -4.831 -8.671 5.577 -4.831 -8.671 H23 0OD 52 0OD H24 H24 H 0 1 N N N 4.524 -3.100 -5.187 4.524 -3.100 -5.187 H24 0OD 53 0OD H25 H25 H 0 1 N N N 5.953 -2.332 -4.416 5.953 -2.332 -4.416 H25 0OD 54 0OD H26 H26 H 0 1 N N N 5.674 -2.142 -6.180 5.674 -2.142 -6.180 H26 0OD 55 0OD H27 H27 H 0 1 N N N 6.066 -5.176 -2.698 6.066 -5.176 -2.698 H27 0OD 56 0OD H28 H28 H 0 1 N N N 7.859 -5.073 -2.678 7.859 -5.073 -2.678 H28 0OD 57 0OD H29 H29 H 0 1 N N N 6.877 -3.589 -2.921 6.877 -3.589 -2.921 H29 0OD 58 0OD H30 H30 H 0 1 N N N 7.703 -7.876 -4.384 7.703 -7.876 -4.384 H30 0OD 59 0OD H31 H31 H 0 1 N N N 9.190 -7.401 -5.272 9.190 -7.401 -5.272 H31 0OD 60 0OD H32 H32 H 0 1 N N N 8.831 -6.674 -3.669 8.831 -6.674 -3.669 H32 0OD 61 0OD CL2 CL2 CL 0 0 N Y N 10.630 -3.539 -5.919 10.630 -3.539 -5.919 CL2 0OD 62 0OD CL3 CL3 CL 0 0 N Y N 10.406 -5.246 -5.919 10.406 -5.246 -5.919 CL3 0OD 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0OD RH C15 SING N N 1 0OD RH C17 SING N N 2 0OD RH C16 SING N N 3 0OD RH CL1 SING N N 4 0OD C1 N2 SING N N 5 0OD N1 C2 SING N N 6 0OD N1 C1 SING N N 7 0OD N1 H1 SING N N 8 0OD O1 C1 DOUB N N 9 0OD S1 C5 SING N N 10 0OD C2 C4 SING N N 11 0OD C2 H2 SING N N 12 0OD N2 C4 SING N N 13 0OD N2 H3 SING N N 14 0OD C3 C2 SING N N 15 0OD C3 S1 SING N N 16 0OD C3 H4 SING N N 17 0OD C3 H5 SING N N 18 0OD N3 C10 SING N N 19 0OD N3 C11 SING N N 20 0OD N3 H6 SING N N 21 0OD C4 C5 SING N N 22 0OD C4 H7 SING N N 23 0OD C5 C6 SING N N 24 0OD C5 H8 SING N N 25 0OD C6 C7 SING N N 26 0OD C6 H9 SING N N 27 0OD C6 H10 SING N N 28 0OD C7 C8 SING N N 29 0OD C7 H11 SING N N 30 0OD C7 H12 SING N N 31 0OD C8 C9 SING N N 32 0OD C8 H13 SING N N 33 0OD C8 H14 SING N N 34 0OD C9 C10 SING N N 35 0OD C9 H15 SING N N 36 0OD C9 H16 SING N N 37 0OD C10 O2 DOUB N N 38 0OD C11 H17 SING N N 39 0OD C11 H18 SING N N 40 0OD C12 C11 SING N N 41 0OD C12 C13 SING N N 42 0OD C12 H19 SING N N 43 0OD C12 H20 SING N N 44 0OD C13 RH SING N N 45 0OD C13 C17 SING N N 46 0OD C14 C13 DOUB N N 47 0OD C14 RH SING N N 48 0OD C14 C15 SING N N 49 0OD C15 C19 SING N N 50 0OD C15 C16 DOUB N N 51 0OD C16 C20 SING N N 52 0OD C17 C16 SING N N 53 0OD C17 C21 SING N N 54 0OD C18 C14 SING N N 55 0OD C18 H21 SING N N 56 0OD C18 H22 SING N N 57 0OD C18 H23 SING N N 58 0OD C19 H24 SING N N 59 0OD C19 H25 SING N N 60 0OD C19 H26 SING N N 61 0OD C20 H27 SING N N 62 0OD C20 H28 SING N N 63 0OD C20 H29 SING N N 64 0OD C21 H30 SING N N 65 0OD C21 H31 SING N N 66 0OD C21 H32 SING N N 67 0OD RH CL2 SING N N 68 0OD RH CL3 SING N N 69 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0OD SMILES ACDLabs 12.01 "O=C1NC2C(SCC2N1)CCCCC(=O)NCCc37c4(C)c5(C)c6(C)C3(C)[Rh+]4567(Cl)(Cl)Cl" 0OD InChI InChI 1.03 "InChI=1S/C21H32N3O2S.3ClH.Rh/c1-12-13(2)15(4)16(14(12)3)9-10-22-19(25)8-6-5-7-18-20-17(11-27-18)23-21(26)24-20;;;;/h17-18,20H,5-11H2,1-4H3,(H,22,25)(H2,23,24,26);3*1H;/q;;;;+4/p-3/t17-,18-,20-;;;;/m0..../s1" 0OD InChIKey InChI 1.03 ZUVIAMPSTWXRBZ-PCIMLXTCSA-K 0OD SMILES_CANONICAL CACTVS 3.370 "CC1|2=C|3(C)[C@@]4(C)C|5(=C1(C)|[Rh+]|2|34|5(Cl)(Cl)Cl)CCNC(=O)CCCC[C@@H]6SC[C@@H]7NC(=O)N[C@H]67" 0OD SMILES CACTVS 3.370 "CC1|2=C|3(C)[C]4(C)C|5(=C1(C)|[Rh+]|2|34|5(Cl)(Cl)Cl)CCNC(=O)CCCC[CH]6SC[CH]7NC(=O)N[CH]67" 0OD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC12=C3([Rh+]145(C2(=C4(C53C)CCNC(=O)CCCCC6C7C(CS6)NC(=O)N7)C)(Cl)(Cl)Cl)C" 0OD SMILES "OpenEye OEToolkits" 1.7.6 "CC12=C3([Rh+]145(C2(=C4(C53C)CCNC(=O)CCCCC6C7C(CS6)NC(=O)N7)C)(Cl)(Cl)Cl)C" # _pdbx_chem_comp_identifier.comp_id 0OD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "trichloro{(1,2,3,4,5-eta)-1,2,3,4-tetramethyl-5-[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]cyclopentadienyl}rhodium(1+)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0OD "Create component" 2012-08-21 RCSB 0OD "Other modification" 2012-08-27 RCSB 0OD "Initial release" 2013-02-08 RCSB 0OD "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0OD _pdbx_chem_comp_synonyms.name "[Cp*(Biot-methylene)RhCl(H2O)2]+" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##