data_0OM # _chem_comp.id 0OM _chem_comp.name "benzyl pyridine-3-carboxylate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Benzyl nicotinate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-03 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 213.232 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0OM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4EH5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0OM CAG CAG C 0 1 Y N N -4.012 -1.351 -17.539 -3.103 -0.075 1.197 CAG 0OM 1 0OM CAC CAC C 0 1 Y N N -4.475 -1.126 -16.246 -4.252 0.694 1.199 CAC 0OM 2 0OM CAB CAB C 0 1 Y N N -5.726 -0.547 -16.040 -4.822 1.087 0.002 CAB 0OM 3 0OM CAD CAD C 0 1 Y N N -6.526 -0.193 -17.128 -4.245 0.710 -1.196 CAD 0OM 4 0OM CAH CAH C 0 1 Y N N -6.065 -0.421 -18.423 -3.096 -0.059 -1.197 CAH 0OM 5 0OM CAO CAO C 0 1 Y N N -4.810 -0.999 -18.624 -2.522 -0.447 -0.001 CAO 0OM 6 0OM CAK CAK C 0 1 N N N -4.346 -1.216 -19.915 -1.270 -1.285 -0.003 CAK 0OM 7 0OM OAM OAM O 0 1 N N N -4.949 -0.508 -21.023 -0.106 -0.417 -0.001 OAM 0OM 8 0OM CAN CAN C 0 1 N N N -4.119 -0.317 -22.093 1.102 -1.013 -0.002 CAN 0OM 9 0OM OAA OAA O 0 1 N N N -3.889 -1.221 -22.897 1.181 -2.225 -0.005 OAA 0OM 10 0OM CAP CAP C 0 1 Y N N -3.514 1.064 -22.298 2.331 -0.193 0.000 CAP 0OM 11 0OM CAI CAI C 0 1 Y N N -2.557 1.541 -21.404 3.592 -0.800 -0.001 CAI 0OM 12 0OM CAE CAE C 0 1 Y N N -2.027 2.804 -21.619 4.712 0.013 0.001 CAE 0OM 13 0OM CAF CAF C 0 1 Y N N -2.486 3.523 -22.718 4.551 1.387 0.005 CAF 0OM 14 0OM NAL NAL N 0 1 Y N N -3.407 3.052 -23.550 3.349 1.932 0.006 NAL 0OM 15 0OM CAJ CAJ C 0 1 Y N N -3.932 1.848 -23.375 2.254 1.201 -0.002 CAJ 0OM 16 0OM H1 H1 H 0 1 N N N -3.041 -1.795 -17.699 -2.657 -0.381 2.131 H1 0OM 17 0OM H2 H2 H 0 1 N N N -3.863 -1.401 -15.400 -4.703 0.988 2.134 H2 0OM 18 0OM H3 H3 H 0 1 N N N -6.078 -0.371 -15.034 -5.720 1.687 0.004 H3 0OM 19 0OM H4 H4 H 0 1 N N N -7.496 0.255 -16.967 -4.691 1.016 -2.130 H4 0OM 20 0OM H5 H5 H 0 1 N N N -6.678 -0.151 -19.270 -2.645 -0.354 -2.134 H5 0OM 21 0OM H6 H6 H 0 1 N N N -4.465 -2.290 -20.120 -1.254 -1.916 0.885 H6 0OM 22 0OM H7 H7 H 0 1 N N N -3.276 -0.959 -19.917 -1.253 -1.912 -0.895 H7 0OM 23 0OM H8 H8 H 0 1 N N N -2.236 0.942 -20.565 3.690 -1.876 -0.003 H8 0OM 24 0OM H9 H9 H 0 1 N N N -1.282 3.216 -20.955 5.701 -0.420 0.001 H9 0OM 25 0OM H10 H10 H 0 1 N N N -2.076 4.505 -22.902 5.423 2.024 0.007 H10 0OM 26 0OM H11 H11 H 0 1 N N N -4.678 1.476 -24.061 1.288 1.684 -0.001 H11 0OM 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0OM NAL CAJ DOUB Y N 1 0OM NAL CAF SING Y N 2 0OM CAJ CAP SING Y N 3 0OM OAA CAN DOUB N N 4 0OM CAF CAE DOUB Y N 5 0OM CAP CAN SING N N 6 0OM CAP CAI DOUB Y N 7 0OM CAN OAM SING N N 8 0OM CAE CAI SING Y N 9 0OM OAM CAK SING N N 10 0OM CAK CAO SING N N 11 0OM CAO CAH DOUB Y N 12 0OM CAO CAG SING Y N 13 0OM CAH CAD SING Y N 14 0OM CAG CAC DOUB Y N 15 0OM CAD CAB DOUB Y N 16 0OM CAC CAB SING Y N 17 0OM CAG H1 SING N N 18 0OM CAC H2 SING N N 19 0OM CAB H3 SING N N 20 0OM CAD H4 SING N N 21 0OM CAH H5 SING N N 22 0OM CAK H6 SING N N 23 0OM CAK H7 SING N N 24 0OM CAI H8 SING N N 25 0OM CAE H9 SING N N 26 0OM CAF H10 SING N N 27 0OM CAJ H11 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0OM SMILES ACDLabs 12.01 "O=C(OCc1ccccc1)c2cccnc2" 0OM InChI InChI 1.03 "InChI=1S/C13H11NO2/c15-13(12-7-4-8-14-9-12)16-10-11-5-2-1-3-6-11/h1-9H,10H2" 0OM InChIKey InChI 1.03 KVYGGMBOZFWZBQ-UHFFFAOYSA-N 0OM SMILES_CANONICAL CACTVS 3.370 "O=C(OCc1ccccc1)c2cccnc2" 0OM SMILES CACTVS 3.370 "O=C(OCc1ccccc1)c2cccnc2" 0OM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)COC(=O)c2cccnc2" 0OM SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)COC(=O)c2cccnc2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0OM "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl pyridine-3-carboxylate" 0OM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) pyridine-3-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0OM "Create component" 2012-04-03 RCSB 0OM "Initial release" 2012-11-30 RCSB 0OM "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0OM _pdbx_chem_comp_synonyms.name "Benzyl nicotinate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##