data_0QY # _chem_comp.id 0QY _chem_comp.name "N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]-L-prolinamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H21 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-18 _chem_comp.pdbx_modified_date 2012-05-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 359.424 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0QY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4EPY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0QY O01 O01 O 0 1 N N N 25.287 -8.202 13.074 -3.272 0.287 1.089 O01 0QY 1 0QY C02 C02 C 0 1 N N N 24.746 -8.083 14.165 -3.957 -0.127 0.178 C02 0QY 2 0QY C03 C03 C 0 1 N N S 24.390 -9.338 14.938 -5.278 0.528 -0.131 C03 0QY 3 0QY N04 N04 N 0 1 N N N 23.691 -10.354 14.151 -5.704 1.392 1.000 N04 0QY 4 0QY C05 C05 C 0 1 N N N 24.593 -11.460 13.989 -6.661 2.349 0.388 C05 0QY 5 0QY C06 C06 C 0 1 N N N 25.510 -11.415 15.159 -6.044 2.693 -0.984 C06 0QY 6 0QY C07 C07 C 0 1 N N N 25.620 -9.971 15.493 -5.134 1.495 -1.326 C07 0QY 7 0QY N08 N08 N 0 1 N N N 24.421 -6.792 14.753 -3.533 -1.170 -0.563 N08 0QY 8 0QY C09 C09 C 0 1 Y N N 24.722 -5.485 14.157 -2.255 -1.705 -0.353 C09 0QY 9 0QY C10 C10 C 0 1 Y N N 24.846 -4.300 15.001 -2.038 -3.070 -0.528 C10 0QY 10 0QY C11 C11 C 0 1 Y N N 25.158 -2.981 14.414 -0.787 -3.609 -0.324 C11 0QY 11 0QY C12 C12 C 0 1 Y N N 24.935 -5.346 12.692 -1.215 -0.875 0.020 C12 0QY 12 0QY C13 C13 C 0 1 Y N N 25.268 -3.967 12.076 0.058 -1.410 0.229 C13 0QY 13 0QY C14 C14 C 0 1 Y N N 25.373 -2.850 12.885 0.266 -2.789 0.057 C14 0QY 14 0QY N15 N15 N 0 1 Y N N 25.672 -1.776 12.089 1.603 -3.009 0.332 N15 0QY 15 0QY C16 C16 C 0 1 Y N N 25.751 -2.224 10.781 2.154 -1.808 0.651 C16 0QY 16 0QY C17 C17 C 0 1 N N N 26.068 -1.384 9.563 3.598 -1.590 1.021 C17 0QY 17 0QY C18 C18 C 0 1 Y N N 24.846 -1.138 8.726 4.196 -0.543 0.118 C18 0QY 18 0QY C19 C19 C 0 1 Y N N 24.450 -1.861 7.600 4.883 -0.762 -1.014 C19 0QY 19 0QY N20 N20 N 0 1 Y N N 23.273 -1.300 7.124 5.264 0.431 -1.567 N20 0QY 20 0QY C21 C21 C 0 1 Y N N 22.943 -0.226 7.951 4.821 1.473 -0.784 C21 0QY 21 0QY C22 C22 C 0 1 Y N N 21.766 0.768 7.931 4.928 2.856 -0.880 C22 0QY 22 0QY C23 C23 C 0 1 Y N N 21.684 1.822 8.963 4.361 3.655 0.089 C23 0QY 23 0QY C24 C24 C 0 1 Y N N 22.706 1.929 9.997 3.683 3.094 1.162 C24 0QY 24 0QY C25 C25 C 0 1 Y N N 23.833 0.973 10.016 3.566 1.738 1.276 C25 0QY 25 0QY C26 C26 C 0 1 Y N N 23.916 -0.127 8.939 4.132 0.909 0.306 C26 0QY 26 0QY N27 N27 N 0 1 Y N N 25.505 -3.578 10.781 1.251 -0.872 0.592 N27 0QY 27 0QY H1 H1 H 0 1 N N N 23.746 -9.044 15.780 -6.036 -0.226 -0.342 H1 0QY 28 0QY H2 H2 H 0 1 N N N 23.440 -9.982 13.257 -4.916 1.877 1.402 H2 0QY 29 0QY H4 H4 H 0 1 N N N 24.036 -12.409 13.976 -7.637 1.881 0.259 H4 0QY 30 0QY H5 H5 H 0 1 N N N 25.162 -11.356 13.053 -6.747 3.246 1.002 H5 0QY 31 0QY H6 H6 H 0 1 N N N 25.089 -11.978 16.005 -6.826 2.800 -1.735 H6 0QY 32 0QY H7 H7 H 0 1 N N N 26.495 -11.829 14.897 -5.456 3.608 -0.916 H7 0QY 33 0QY H8 H8 H 0 1 N N N 26.518 -9.537 15.030 -4.099 1.822 -1.425 H8 0QY 34 0QY H9 H9 H 0 1 N N N 25.666 -9.831 16.583 -5.469 1.014 -2.244 H9 0QY 35 0QY H10 H10 H 0 1 N N N 23.954 -6.796 15.637 -4.112 -1.550 -1.242 H10 0QY 36 0QY H11 H11 H 0 1 N N N 24.708 -4.389 16.068 -2.856 -3.710 -0.824 H11 0QY 37 0QY H12 H12 H 0 1 N N N 25.236 -2.111 15.049 -0.626 -4.668 -0.460 H12 0QY 38 0QY H13 H13 H 0 1 N N N 24.857 -6.214 12.054 -1.386 0.184 0.150 H13 0QY 39 0QY H14 H14 H 0 1 N N N 25.809 -0.835 12.398 2.063 -3.863 0.302 H14 0QY 40 0QY H15 H15 H 0 1 N N N 26.818 -1.909 8.953 3.662 -1.257 2.057 H15 0QY 41 0QY H16 H16 H 0 1 N N N 26.475 -0.417 9.893 4.147 -2.525 0.906 H16 0QY 42 0QY H17 H17 H 0 1 N N N 24.968 -2.708 7.174 5.102 -1.735 -1.427 H17 0QY 43 0QY H18 H18 H 0 1 N N N 22.753 -1.611 6.328 5.772 0.527 -2.388 H18 0QY 44 0QY H19 H19 H 0 1 N N N 21.006 0.695 7.167 5.454 3.302 -1.711 H19 0QY 45 0QY H20 H20 H 0 1 N N N 20.860 2.519 8.951 4.446 4.729 0.013 H20 0QY 46 0QY H21 H21 H 0 1 N N N 22.640 2.704 10.746 3.245 3.735 1.913 H21 0QY 47 0QY H22 H22 H 0 1 N N N 24.594 1.045 10.779 3.037 1.308 2.114 H22 0QY 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0QY N20 C19 SING Y N 1 0QY N20 C21 SING Y N 2 0QY C19 C18 DOUB Y N 3 0QY C22 C21 DOUB Y N 4 0QY C22 C23 SING Y N 5 0QY C21 C26 SING Y N 6 0QY C18 C26 SING Y N 7 0QY C18 C17 SING N N 8 0QY C26 C25 DOUB Y N 9 0QY C23 C24 DOUB Y N 10 0QY C17 C16 SING N N 11 0QY C24 C25 SING Y N 12 0QY N27 C16 DOUB Y N 13 0QY N27 C13 SING Y N 14 0QY C16 N15 SING Y N 15 0QY C13 C12 DOUB Y N 16 0QY C13 C14 SING Y N 17 0QY N15 C14 SING Y N 18 0QY C12 C09 SING Y N 19 0QY C14 C11 DOUB Y N 20 0QY O01 C02 DOUB N N 21 0QY C05 N04 SING N N 22 0QY C05 C06 SING N N 23 0QY N04 C03 SING N N 24 0QY C09 N08 SING N N 25 0QY C09 C10 DOUB Y N 26 0QY C02 N08 SING N N 27 0QY C02 C03 SING N N 28 0QY C11 C10 SING Y N 29 0QY C03 C07 SING N N 30 0QY C06 C07 SING N N 31 0QY C03 H1 SING N N 32 0QY N04 H2 SING N N 33 0QY C05 H4 SING N N 34 0QY C05 H5 SING N N 35 0QY C06 H6 SING N N 36 0QY C06 H7 SING N N 37 0QY C07 H8 SING N N 38 0QY C07 H9 SING N N 39 0QY N08 H10 SING N N 40 0QY C10 H11 SING N N 41 0QY C11 H12 SING N N 42 0QY C12 H13 SING N N 43 0QY N15 H14 SING N N 44 0QY C17 H15 SING N N 45 0QY C17 H16 SING N N 46 0QY C19 H17 SING N N 47 0QY N20 H18 SING N N 48 0QY C22 H19 SING N N 49 0QY C23 H20 SING N N 50 0QY C24 H21 SING N N 51 0QY C25 H22 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0QY SMILES ACDLabs 12.01 "O=C(Nc2ccc1nc(nc1c2)Cc4c3ccccc3nc4)C5NCCC5" 0QY InChI InChI 1.03 "InChI=1S/C21H21N5O/c27-21(18-6-3-9-22-18)24-14-7-8-17-19(11-14)26-20(25-17)10-13-12-23-16-5-2-1-4-15(13)16/h1-2,4-5,7-8,11-12,18,22-23H,3,6,9-10H2,(H,24,27)(H,25,26)/t18-/m0/s1" 0QY InChIKey InChI 1.03 FSUGJBWDOIVSMH-SFHVURJKSA-N 0QY SMILES_CANONICAL CACTVS 3.370 "O=C(Nc1ccc2[nH]c(Cc3c[nH]c4ccccc34)nc2c1)[C@@H]5CCCN5" 0QY SMILES CACTVS 3.370 "O=C(Nc1ccc2[nH]c(Cc3c[nH]c4ccccc34)nc2c1)[CH]5CCCN5" 0QY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)c(c[nH]2)Cc3[nH]c4ccc(cc4n3)NC(=O)[C@@H]5CCCN5" 0QY SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)c(c[nH]2)Cc3[nH]c4ccc(cc4n3)NC(=O)C5CCCN5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0QY "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]-L-prolinamide" 0QY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0QY "Create component" 2012-04-18 RCSB #