data_0R6 # _chem_comp.id 0R6 _chem_comp.name ;2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N3 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-27 _chem_comp.pdbx_modified_date 2013-03-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 591.296 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0R6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ELU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0R6 O2 O2 O 0 1 N N N 18.487 -20.718 -5.683 1.368 -3.188 1.249 O2 0R6 1 0R6 C2 C2 C 0 1 N N N 18.863 -19.539 -5.879 2.349 -2.489 1.059 C2 0R6 2 0R6 N3 N3 N 0 1 N N N 19.013 -18.686 -4.829 3.222 -2.322 2.050 N3 0R6 3 0R6 C4 C4 C 0 1 N N N 19.434 -17.413 -5.032 4.302 -1.571 1.888 C4 0R6 4 0R6 N4 N4 N 0 1 N N N 19.573 -16.571 -3.979 5.197 -1.403 2.916 N4 0R6 5 0R6 C5 C5 C 0 1 N N N 19.727 -16.928 -6.401 4.524 -0.922 0.591 C5 0R6 6 0R6 C29 C29 C 0 1 N N N 20.132 -15.694 -6.578 5.676 -0.101 0.364 C29 0R6 7 0R6 C30 C30 C 0 1 N N N 20.520 -14.564 -6.744 6.620 0.572 0.179 C30 0R6 8 0R6 C31 C31 C 0 1 Y N N 20.927 -13.329 -6.949 7.771 1.392 -0.047 C31 0R6 9 0R6 C36 C36 C 0 1 Y N N 20.646 -12.300 -6.048 7.963 2.001 -1.293 C36 0R6 10 0R6 C35 C35 C 0 1 Y N N 21.103 -10.996 -6.299 9.061 2.784 -1.507 C35 0R6 11 0R6 C34 C34 C 0 1 Y N N 21.856 -10.722 -7.447 9.993 2.977 -0.484 C34 0R6 12 0R6 C37 C37 C 0 1 N N N 22.295 -9.537 -7.682 11.144 3.799 -0.710 C37 0R6 13 0R6 C38 C38 C 0 1 N N N 22.733 -8.363 -7.921 12.088 4.472 -0.896 C38 0R6 14 0R6 C33 C33 C 0 1 Y N N 22.156 -11.738 -8.334 9.802 2.370 0.760 C33 0R6 15 0R6 C32 C32 C 0 1 Y N N 21.690 -13.028 -8.077 8.702 1.590 0.978 C32 0R6 16 0R6 C6 C6 C 0 1 N N N 19.556 -17.854 -7.441 3.589 -1.127 -0.406 C6 0R6 17 0R6 N1 N1 N 0 1 N N N 19.143 -19.118 -7.194 2.516 -1.919 -0.146 N1 0R6 18 0R6 "C1'" "C1'" C 0 1 N N R 18.908 -20.126 -8.256 1.517 -2.146 -1.194 "C1'" 0R6 19 0R6 "C2'" "C2'" C 0 1 N N N 17.461 -19.887 -8.681 1.508 -3.633 -1.596 "C2'" 0R6 20 0R6 "C3'" "C3'" C 0 1 N N S 17.590 -19.018 -9.927 0.054 -4.091 -1.322 "C3'" 0R6 21 0R6 "O3'" "O3'" O 0 1 N N N 16.465 -19.175 -10.814 -0.414 -4.950 -2.364 "O3'" 0R6 22 0R6 "O4'" "O4'" O 0 1 N N N 19.698 -19.905 -9.422 0.206 -1.826 -0.697 "O4'" 0R6 23 0R6 "C4'" "C4'" C 0 1 N N R 18.880 -19.541 -10.537 -0.716 -2.746 -1.324 "C4'" 0R6 24 0R6 "C5'" "C5'" C 0 1 N N N 19.574 -18.540 -11.458 -2.003 -2.862 -0.505 "C5'" 0R6 25 0R6 "O5'" "O5'" O 0 1 N N N 19.926 -17.391 -10.681 -2.750 -1.648 -0.619 "O5'" 0R6 26 0R6 PA PA P 0 1 N N N 19.742 -15.959 -11.359 -4.163 -1.417 0.116 PA 0R6 27 0R6 O1A O1A O 0 1 N N N 20.072 -15.997 -12.826 -4.011 -1.662 1.568 O1A 0R6 28 0R6 O2A O2A O 0 1 N N N 20.441 -14.910 -10.527 -5.255 -2.435 -0.488 O2A 0R6 29 0R6 O3A O3A O 0 1 N N N 18.164 -15.738 -11.076 -4.652 0.098 -0.125 O3A 0R6 30 0R6 PB PB P 0 1 N N N 16.923 -15.889 -12.098 -5.698 1.068 0.622 PB 0R6 31 0R6 O1B O1B O 0 1 N N N 17.316 -16.656 -13.332 -6.895 0.292 1.015 O1B 0R6 32 0R6 O2B O2B O 0 1 N N N 15.787 -16.436 -11.267 -5.008 1.693 1.935 O2B 0R6 33 0R6 O3B O3B O 0 1 N N N 16.524 -14.362 -12.393 -6.133 2.256 -0.374 O3B 0R6 34 0R6 PG PG P 0 1 N N N 17.104 -13.406 -13.561 -7.326 3.336 -0.372 PG 0R6 35 0R6 O3G O3G O 0 1 N N N 18.212 -14.168 -14.259 -8.706 2.613 -0.780 O3G 0R6 36 0R6 O1G O1G O 0 1 N N N 15.886 -13.142 -14.426 -7.458 3.924 0.980 O1G 0R6 37 0R6 O2G O2G O 0 1 N N N 17.592 -12.198 -12.798 -6.997 4.501 -1.434 O2G 0R6 38 0R6 H1 H1 H 0 1 N N N 19.365 -16.889 -3.054 5.042 -1.837 3.770 H1 0R6 39 0R6 H2 H2 H 0 1 N N N 19.883 -15.632 -4.127 5.985 -0.852 2.788 H2 0R6 40 0R6 H3 H3 H 0 1 N N N 20.075 -12.508 -5.155 7.243 1.852 -2.083 H3 0R6 41 0R6 H4 H4 H 0 1 N N N 20.873 -10.202 -5.604 9.210 3.254 -2.468 H4 0R6 42 0R6 H5 H5 H 0 1 N N N 23.097 -7.387 -8.120 12.932 5.074 -1.062 H5 0R6 43 0R6 H6 H6 H 0 1 N N N 22.745 -11.536 -9.217 10.521 2.523 1.551 H6 0R6 44 0R6 H7 H7 H 0 1 N N N 21.928 -13.818 -8.774 8.554 1.121 1.940 H7 0R6 45 0R6 H8 H8 H 0 1 N N N 19.758 -17.552 -8.458 3.714 -0.673 -1.378 H8 0R6 46 0R6 H9 H9 H 0 1 N N N 19.029 -21.147 -7.865 1.745 -1.528 -2.062 H9 0R6 47 0R6 H10 H10 H 0 1 N N N 16.902 -19.362 -7.892 1.750 -3.744 -2.653 H10 0R6 48 0R6 H11 H11 H 0 1 N N N 16.959 -20.837 -8.916 2.210 -4.199 -0.983 H11 0R6 49 0R6 H12 H12 H 0 1 N N N 17.716 -17.965 -9.634 -0.022 -4.582 -0.352 H12 0R6 50 0R6 H13 H13 H 0 1 N N N 15.682 -18.837 -10.396 0.095 -5.766 -2.461 H13 0R6 51 0R6 H14 H14 H 0 1 N N N 18.643 -20.440 -11.125 -0.935 -2.431 -2.344 H14 0R6 52 0R6 H15 H15 H 0 1 N N N 18.893 -18.246 -12.270 -2.600 -3.692 -0.882 H15 0R6 53 0R6 H16 H16 H 0 1 N N N 20.481 -18.993 -11.885 -1.754 -3.038 0.541 H16 0R6 54 0R6 H17 H17 H 0 1 N N N 21.019 -14.399 -11.081 -5.407 -2.331 -1.437 H17 0R6 55 0R6 H18 H18 H 0 1 N N N 15.460 -17.235 -11.663 -4.216 2.216 1.752 H18 0R6 56 0R6 H19 H19 H 0 1 N N N 17.951 -14.360 -15.152 -8.692 2.205 -1.656 H19 0R6 57 0R6 H20 H20 H 0 1 N N N 17.036 -11.453 -12.995 -7.675 5.189 -1.486 H20 0R6 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0R6 O1G PG DOUB N N 1 0R6 O3G PG SING N N 2 0R6 PG O2G SING N N 3 0R6 PG O3B SING N N 4 0R6 O1B PB DOUB N N 5 0R6 O1A PA DOUB N N 6 0R6 O3B PB SING N N 7 0R6 PB O2B SING N N 8 0R6 PB O3A SING N N 9 0R6 "C5'" "O5'" SING N N 10 0R6 "C5'" "C4'" SING N N 11 0R6 PA O3A SING N N 12 0R6 PA "O5'" SING N N 13 0R6 PA O2A SING N N 14 0R6 "O3'" "C3'" SING N N 15 0R6 "C4'" "C3'" SING N N 16 0R6 "C4'" "O4'" SING N N 17 0R6 "C3'" "C2'" SING N N 18 0R6 "O4'" "C1'" SING N N 19 0R6 "C2'" "C1'" SING N N 20 0R6 C33 C32 DOUB Y N 21 0R6 C33 C34 SING Y N 22 0R6 "C1'" N1 SING N N 23 0R6 C32 C31 SING Y N 24 0R6 C38 C37 TRIP N N 25 0R6 C37 C34 SING N N 26 0R6 C34 C35 DOUB Y N 27 0R6 C6 N1 SING N N 28 0R6 C6 C5 DOUB N N 29 0R6 N1 C2 SING N N 30 0R6 C31 C30 SING N N 31 0R6 C31 C36 DOUB Y N 32 0R6 C30 C29 TRIP N N 33 0R6 C29 C5 SING N N 34 0R6 C5 C4 SING N N 35 0R6 C35 C36 SING Y N 36 0R6 C2 O2 DOUB N N 37 0R6 C2 N3 SING N N 38 0R6 C4 N3 DOUB N N 39 0R6 C4 N4 SING N N 40 0R6 N4 H1 SING N N 41 0R6 N4 H2 SING N N 42 0R6 C36 H3 SING N N 43 0R6 C35 H4 SING N N 44 0R6 C38 H5 SING N N 45 0R6 C33 H6 SING N N 46 0R6 C32 H7 SING N N 47 0R6 C6 H8 SING N N 48 0R6 "C1'" H9 SING N N 49 0R6 "C2'" H10 SING N N 50 0R6 "C2'" H11 SING N N 51 0R6 "C3'" H12 SING N N 52 0R6 "O3'" H13 SING N N 53 0R6 "C4'" H14 SING N N 54 0R6 "C5'" H15 SING N N 55 0R6 "C5'" H16 SING N N 56 0R6 O2A H17 SING N N 57 0R6 O2B H18 SING N N 58 0R6 O3G H19 SING N N 59 0R6 O2G H20 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0R6 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(N2C(=O)N=C(N)C(C#Cc1ccc(C#C)cc1)=C2)CC3O" 0R6 InChI InChI 1.03 "InChI=1S/C19H20N3O13P3/c1-2-12-3-5-13(6-4-12)7-8-14-10-22(19(24)21-18(14)20)17-9-15(23)16(33-17)11-32-37(28,29)35-38(30,31)34-36(25,26)27/h1,3-6,10,15-17,23H,9,11H2,(H,28,29)(H,30,31)(H2,20,21,24)(H2,25,26,27)/t15-,16+,17+/m0/s1" 0R6 InChIKey InChI 1.03 CPJFKEBWOPVPDF-GVDBMIGSSA-N 0R6 SMILES_CANONICAL CACTVS 3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 0R6 SMILES CACTVS 3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 0R6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 0R6 SMILES "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0R6 "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-5-[(4-ethynylphenyl)ethynyl]cytidine 5'-(tetrahydrogen triphosphate) ; 0R6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0R6 "Create component" 2012-04-27 RCSB 0R6 "Initial release" 2013-03-27 RCSB #