data_0R7 # _chem_comp.id 0R7 _chem_comp.name "[[(2S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N3 O12 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-27 _chem_comp.pdbx_modified_date 2013-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 575.296 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0R7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ELV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0R7 "O5'" "O5'" O 0 1 N N N 19.548 -18.219 -10.456 -1.242 1.780 -1.268 "O5'" 0R7 1 0R7 P1 P1 P 0 1 N N N 18.905 -16.860 -10.981 -2.109 0.437 -1.455 P1 0R7 2 0R7 O1 O1 O 0 1 N N N 17.330 -17.145 -10.899 -3.360 0.460 -0.443 O1 0R7 3 0R7 P2 P2 P 0 1 N N N 16.367 -16.695 -12.111 -4.332 -0.674 0.160 P2 0R7 4 0R7 O3 O3 O 0 1 N N N 16.521 -15.099 -12.170 -5.689 0.011 0.692 O3 0R7 5 0R7 P3 P3 P 0 1 N N N 16.649 -14.298 -13.559 -7.139 -0.554 1.104 P3 0R7 6 0R7 O5 O5 O 0 1 N N N 17.089 -12.807 -13.192 -7.076 -1.157 2.596 O5 0R7 7 0R7 O6 O6 O 0 1 N N N 15.227 -14.254 -14.286 -8.215 0.642 1.054 O6 0R7 8 0R7 O7 O7 O 0 1 N N N 17.718 -14.890 -14.430 -7.541 -1.619 0.159 O7 0R7 9 0R7 O8 O8 O 0 1 N N N 14.994 -17.061 -11.686 -3.594 -1.421 1.380 O8 0R7 10 0R7 O9 O9 O 0 1 N N N 16.743 -17.454 -13.476 -4.657 -1.658 -0.897 O9 0R7 11 0R7 O10 O10 O 0 1 N N N 19.336 -15.609 -10.082 -2.646 0.352 -2.971 O10 0R7 12 0R7 O11 O11 O 0 1 N N N 19.421 -16.654 -12.366 -1.262 -0.742 -1.166 O11 0R7 13 0R7 "C1'" "C1'" C 0 1 N N R 18.972 -21.190 -8.090 2.164 4.150 -0.023 "C1'" 0R7 14 0R7 N1 N1 N 0 1 N N N 19.074 -20.264 -6.961 3.257 3.325 0.499 N1 0R7 15 0R7 C6 C6 C 0 1 N N N 19.476 -18.984 -7.140 3.253 1.985 0.266 C6 0R7 16 0R7 C5 C5 C 0 1 N N N 19.510 -18.145 -6.099 4.289 1.218 0.763 C5 0R7 17 0R7 C1 C1 C 0 1 N N N 19.908 -16.775 -6.217 4.330 -0.196 0.545 C1 0R7 18 0R7 C3 C3 C 0 1 N N N 20.222 -15.619 -6.186 4.364 -1.356 0.366 C3 0R7 19 0R7 N2 N2 N 0 1 N N N 18.757 -19.789 -4.615 5.265 3.208 1.698 N2 0R7 20 0R7 C4 C4 C 0 1 N N N 19.130 -18.586 -4.753 5.346 1.897 1.522 C4 0R7 21 0R7 C2 C2 C 0 1 N N N 18.710 -20.691 -5.730 4.248 3.905 1.194 C2 0R7 22 0R7 O2 O2 O 0 1 N N N 18.303 -21.827 -5.507 4.214 5.111 1.374 O2 0R7 23 0R7 N3 N3 N 0 1 N N N 19.198 -17.722 -3.751 6.401 1.186 2.040 N3 0R7 24 0R7 "O4'" "O4'" O 0 1 N N N 19.792 -20.789 -9.197 0.984 3.353 -0.176 "O4'" 0R7 25 0R7 "C4'" "C4'" C 0 1 N N S 19.039 -20.628 -10.420 0.550 3.378 -1.545 "C4'" 0R7 26 0R7 "C3'" "C3'" C 0 1 N N N 17.596 -20.388 -9.918 1.823 3.704 -2.367 "C3'" 0R7 27 0R7 "C2'" "C2'" C 0 1 N N N 17.535 -21.285 -8.667 2.542 4.701 -1.415 "C2'" 0R7 28 0R7 "C5'" "C5'" C 0 1 N N N 19.579 -19.427 -11.231 -0.008 2.012 -1.950 "C5'" 0R7 29 0R7 C01 C01 C 0 1 Y N N 20.585 -14.236 -6.070 4.405 -2.771 0.147 C01 0R7 30 0R7 C02 C02 C 0 1 Y N N 21.748 -13.750 -6.676 3.390 -3.396 -0.585 C02 0R7 31 0R7 C03 C03 C 0 1 Y N N 22.073 -12.395 -6.555 3.430 -4.745 -0.793 C03 0R7 32 0R7 C04 C04 C 0 1 Y N N 21.235 -11.541 -5.832 4.486 -5.501 -0.276 C04 0R7 33 0R7 C05 C05 C 0 1 Y N N 20.076 -12.036 -5.226 5.500 -4.878 0.455 C05 0R7 34 0R7 C C C 0 1 Y N N 19.746 -13.386 -5.347 5.465 -3.527 0.660 C 0R7 35 0R7 C7 C7 C 0 1 N N N 21.566 -10.143 -5.705 4.527 -6.916 -0.495 C7 0R7 36 0R7 C8 C8 C 0 1 N N N 21.853 -8.980 -5.600 4.562 -8.075 -0.675 C8 0R7 37 0R7 H1 H1 H 0 1 N N N 17.925 -12.614 -13.599 -6.818 -0.513 3.270 H1 0R7 38 0R7 H2 H2 H 0 1 N N N 15.306 -14.617 -15.160 -9.113 0.374 1.291 H2 0R7 39 0R7 H3 H3 H 0 1 N N N 14.620 -17.671 -12.311 -3.351 -0.835 2.111 H3 0R7 40 0R7 H4 H4 H 0 1 N N N 19.830 -14.994 -10.611 -3.210 1.094 -3.230 H4 0R7 41 0R7 H5 H5 H 0 1 N N N 19.271 -22.195 -7.758 1.967 4.976 0.660 H5 0R7 42 0R7 H6 H6 H 0 1 N N N 19.769 -18.641 -8.121 2.453 1.529 -0.298 H6 0R7 43 0R7 H7 H7 H 0 1 N N N 18.947 -18.008 -2.826 6.451 0.227 1.907 H7 0R7 44 0R7 H8 H8 H 0 1 N N N 19.500 -16.784 -3.919 7.095 1.644 2.540 H8 0R7 45 0R7 H9 H9 H 0 1 N N N 19.074 -21.540 -11.034 -0.203 4.153 -1.690 H9 0R7 46 0R7 H10 H10 H 0 1 N N N 17.434 -19.331 -9.660 2.425 2.810 -2.529 H10 0R7 47 0R7 H11 H11 H 0 1 N N N 16.855 -20.700 -10.669 1.567 4.180 -3.314 H11 0R7 48 0R7 H12 H12 H 0 1 N N N 16.795 -20.907 -7.946 2.159 5.712 -1.550 H12 0R7 49 0R7 H13 H13 H 0 1 N N N 17.287 -22.322 -8.937 3.622 4.670 -1.565 H13 0R7 50 0R7 H14 H14 H 0 1 N N N 18.958 -19.293 -12.129 0.707 1.234 -1.682 H14 0R7 51 0R7 H15 H15 H 0 1 N N N 20.617 -19.634 -11.530 -0.179 1.993 -3.026 H15 0R7 52 0R7 H16 H16 H 0 1 N N N 22.390 -14.416 -7.233 2.574 -2.812 -0.984 H16 0R7 53 0R7 H17 H17 H 0 1 N N N 22.969 -12.010 -7.019 2.646 -5.228 -1.358 H17 0R7 54 0R7 H18 H18 H 0 1 N N N 19.436 -11.372 -4.664 6.315 -5.463 0.855 H18 0R7 55 0R7 H19 H19 H 0 1 N N N 18.849 -13.771 -4.885 6.251 -3.045 1.221 H19 0R7 56 0R7 H20 H20 H 0 1 N N N 22.106 -7.955 -5.507 4.592 -9.113 -0.835 H20 0R7 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0R7 O7 P3 DOUB N N 1 0R7 O6 P3 SING N N 2 0R7 P3 O5 SING N N 3 0R7 P3 O3 SING N N 4 0R7 O9 P2 DOUB N N 5 0R7 O11 P1 DOUB N N 6 0R7 O3 P2 SING N N 7 0R7 P2 O8 SING N N 8 0R7 P2 O1 SING N N 9 0R7 "C5'" "O5'" SING N N 10 0R7 "C5'" "C4'" SING N N 11 0R7 P1 O1 SING N N 12 0R7 P1 "O5'" SING N N 13 0R7 P1 O10 SING N N 14 0R7 "C4'" "C3'" SING N N 15 0R7 "C4'" "O4'" SING N N 16 0R7 "C3'" "C2'" SING N N 17 0R7 "O4'" "C1'" SING N N 18 0R7 "C2'" "C1'" SING N N 19 0R7 "C1'" N1 SING N N 20 0R7 C6 N1 SING N N 21 0R7 C6 C5 DOUB N N 22 0R7 N1 C2 SING N N 23 0R7 C02 C03 DOUB Y N 24 0R7 C02 C01 SING Y N 25 0R7 C03 C04 SING Y N 26 0R7 C1 C3 TRIP N N 27 0R7 C1 C5 SING N N 28 0R7 C3 C01 SING N N 29 0R7 C5 C4 SING N N 30 0R7 C01 C DOUB Y N 31 0R7 C04 C7 SING N N 32 0R7 C04 C05 DOUB Y N 33 0R7 C2 O2 DOUB N N 34 0R7 C2 N2 SING N N 35 0R7 C7 C8 TRIP N N 36 0R7 C C05 SING Y N 37 0R7 C4 N2 DOUB N N 38 0R7 C4 N3 SING N N 39 0R7 O5 H1 SING N N 40 0R7 O6 H2 SING N N 41 0R7 O8 H3 SING N N 42 0R7 O10 H4 SING N N 43 0R7 "C1'" H5 SING N N 44 0R7 C6 H6 SING N N 45 0R7 N3 H7 SING N N 46 0R7 N3 H8 SING N N 47 0R7 "C4'" H9 SING N N 48 0R7 "C3'" H10 SING N N 49 0R7 "C3'" H11 SING N N 50 0R7 "C2'" H12 SING N N 51 0R7 "C2'" H13 SING N N 52 0R7 "C5'" H14 SING N N 53 0R7 "C5'" H15 SING N N 54 0R7 C02 H16 SING N N 55 0R7 C03 H17 SING N N 56 0R7 C05 H18 SING N N 57 0R7 C H19 SING N N 58 0R7 C8 H20 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0R7 InChI InChI 1.03 "InChI=1S/C19H20N3O12P3/c1-2-13-3-5-14(6-4-13)7-8-15-11-22(19(23)21-18(15)20)17-10-9-16(32-17)12-31-36(27,28)34-37(29,30)33-35(24,25)26/h1,3-6,11,16-17H,9-10,12H2,(H,27,28)(H,29,30)(H2,20,21,23)(H2,24,25,26)/t16-,17+/m0/s1" 0R7 InChIKey InChI 1.03 PROFTMDIPXHDEG-DLBZAZTESA-N 0R7 SMILES_CANONICAL CACTVS 3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[C@H]3CC[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 0R7 SMILES CACTVS 3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[CH]3CC[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3" 0R7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)[C@H]3CC[C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O" 0R7 SMILES "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)C3CCC(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0R7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0R7 "Create component" 2012-04-27 RCSB 0R7 "Initial release" 2013-04-24 RCSB #