data_0RV # _chem_comp.id 0RV _chem_comp.name ;(2S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3-methyl-2H-pyrro le-5-carboxylic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H25 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Meropenem, hydroxylated form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-05-10 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.462 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0RV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4EYL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0RV O O O 0 1 N N N -2.802 -41.353 1.916 5.176 1.953 -0.521 O 0RV 1 0RV C C C 0 1 N N N -2.371 -40.223 1.722 4.998 0.946 0.131 C 0RV 2 0RV NAY NAY N 0 1 N N N -3.128 -39.138 1.968 6.046 0.171 0.474 NAY 0RV 3 0RV CAC CAC C 0 1 N N N -4.469 -39.250 2.538 7.400 0.545 0.059 CAC 0RV 4 0RV CAD CAD C 0 1 N N N -2.694 -37.764 1.731 5.830 -1.046 1.261 CAD 0RV 5 0RV CA CA C 0 1 N N S -0.989 -40.066 1.119 3.605 0.564 0.563 CA 0RV 6 0RV CB CB C 0 1 N N N -0.128 -41.304 1.378 3.030 -0.527 -0.374 CB 0RV 7 0RV N N N 0 1 N N N -0.193 -38.950 1.622 2.687 1.713 0.412 N 0RV 8 0RV CD CD C 0 1 N N N 1.234 -39.304 1.852 1.377 1.211 -0.040 CD 0RV 9 0RV CG CG C 0 1 N N S 1.310 -40.814 1.603 1.503 -0.319 -0.197 CG 0RV 10 0RV SAO SAO S 0 1 N N N 2.103 -41.656 2.956 0.604 -0.890 -1.666 SAO 0RV 11 0RV CAT CAT C 0 1 N N N 3.805 -41.527 2.605 -1.081 -0.805 -1.157 CAT 0RV 12 0RV CAV CAV C 0 1 N N N 4.462 -42.025 1.507 -2.000 0.032 -1.655 CAV 0RV 13 0RV CAB CAB C 0 1 N N N 4.067 -43.019 0.437 -1.798 1.062 -2.736 CAB 0RV 14 0RV CAS CAS C 0 1 N N N 4.738 -40.587 3.272 -1.702 -1.647 -0.121 CAS 0RV 15 0RV CAP CAP C 0 1 N N N 4.398 -39.835 4.511 -0.989 -2.698 0.652 CAP 0RV 16 0RV OAE OAE O 0 1 N N N 3.254 -39.914 5.010 -1.649 -3.416 1.580 OAE 0RV 17 0RV OAH OAH O 0 1 N N N 5.280 -39.084 4.971 0.188 -2.910 0.445 OAH 0RV 18 0RV NAN NAN N 0 1 N N N 5.924 -40.617 2.598 -2.955 -1.347 0.027 NAN 0RV 19 0RV CAZ CAZ C 0 1 N N S 5.875 -41.597 1.492 -3.283 -0.267 -0.911 CAZ 0RV 20 0RV CBA CBA C 0 1 N N S 6.763 -42.715 2.018 -3.754 0.973 -0.150 CBA 0RV 21 0RV CAQ CAQ C 0 1 N N N 7.413 -42.257 3.321 -2.696 1.388 0.840 CAQ 0RV 22 0RV OAF OAF O 0 1 N N N 7.953 -41.114 3.377 -1.670 0.756 0.927 OAF 0RV 23 0RV OAI OAI O 0 1 N N N 7.298 -42.993 4.350 -2.893 2.460 1.624 OAI 0RV 24 0RV CAU CAU C 0 1 N N R 7.760 -43.133 0.944 -5.051 0.652 0.595 CAU 0RV 25 0RV OAJ OAJ O 0 1 N N N 8.223 -44.470 1.180 -6.055 0.259 -0.343 OAJ 0RV 26 0RV CAA CAA C 0 1 N N N 8.938 -42.170 0.860 -5.523 1.893 1.356 CAA 0RV 27 0RV H1 H1 H 0 1 N N N -4.904 -38.246 2.654 7.852 1.178 0.823 H1 0RV 28 0RV H2 H2 H 0 1 N N N -5.103 -39.849 1.868 8.002 -0.355 -0.070 H2 0RV 29 0RV H3 H3 H 0 1 N N N -4.410 -39.740 3.521 7.354 1.090 -0.884 H3 0RV 30 0RV H4 H4 H 0 1 N N N -3.499 -37.070 2.015 5.661 -1.888 0.589 H4 0RV 31 0RV H5 H5 H 0 1 N N N -1.799 -37.553 2.335 6.709 -1.242 1.874 H5 0RV 32 0RV H6 H6 H 0 1 N N N -2.457 -37.633 0.665 4.960 -0.913 1.904 H6 0RV 33 0RV H7 H7 H 0 1 N N N -1.103 -39.956 0.030 3.609 0.215 1.595 H7 0RV 34 0RV H8 H8 H 0 1 N N N -0.490 -41.835 2.271 3.331 -0.353 -1.407 H8 0RV 35 0RV H9 H9 H 0 1 N N N -0.165 -41.978 0.510 3.330 -1.522 -0.044 H9 0RV 36 0RV H10 H10 H 0 1 N N N -0.232 -38.206 0.955 2.600 2.223 1.278 H10 0RV 37 0RV H12 H12 H 0 1 N N N 1.530 -39.066 2.884 0.613 1.445 0.702 H12 0RV 38 0RV H13 H13 H 0 1 N N N 1.885 -38.763 1.150 1.115 1.664 -0.996 H13 0RV 39 0RV H14 H14 H 0 1 N N N 1.914 -41.012 0.705 1.146 -0.830 0.697 H14 0RV 40 0RV H15 H15 H 0 1 N N N 3.000 -43.266 0.541 -0.788 0.975 -3.136 H15 0RV 41 0RV H16 H16 H 0 1 N N N 4.246 -42.580 -0.555 -2.521 0.897 -3.534 H16 0RV 42 0RV H17 H17 H 0 1 N N N 4.668 -43.934 0.547 -1.939 2.059 -2.318 H17 0RV 43 0RV H18 H18 H 0 1 N N N 3.193 -39.330 5.757 -1.144 -4.088 2.056 H18 0RV 44 0RV H19 H19 H 0 1 N N N 6.210 -41.195 0.524 -4.054 -0.597 -1.608 H19 0RV 45 0RV H20 H20 H 0 1 N N N 6.123 -43.581 2.244 -3.932 1.786 -0.854 H20 0RV 46 0RV H21 H21 H 0 1 N N N 7.669 -42.547 5.102 -2.186 2.687 2.243 H21 0RV 47 0RV H22 H22 H 0 1 N N N 7.238 -43.105 -0.024 -4.874 -0.160 1.299 H22 0RV 48 0RV H23 H23 H 0 1 N N N 7.479 -45.059 1.230 -6.264 0.935 -1.002 H23 0RV 49 0RV H24 H24 H 0 1 N N N 8.567 -41.151 0.679 -6.447 1.664 1.887 H24 0RV 50 0RV H25 H25 H 0 1 N N N 9.499 -42.193 1.806 -4.758 2.193 2.072 H25 0RV 51 0RV H26 H26 H 0 1 N N N 9.599 -42.471 0.034 -5.700 2.706 0.652 H26 0RV 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0RV CAB CAV SING N N 1 0RV CAA CAU SING N N 2 0RV CAU OAJ SING N N 3 0RV CAU CBA SING N N 4 0RV CA CB SING N N 5 0RV CA N SING N N 6 0RV CA C SING N N 7 0RV CB CG SING N N 8 0RV CAZ CAV SING N N 9 0RV CAZ CBA SING N N 10 0RV CAZ NAN SING N N 11 0RV CAV CAT DOUB N N 12 0RV CG CD SING N N 13 0RV CG SAO SING N N 14 0RV N CD SING N N 15 0RV C O DOUB N N 16 0RV C NAY SING N N 17 0RV CAD NAY SING N N 18 0RV NAY CAC SING N N 19 0RV CBA CAQ SING N N 20 0RV NAN CAS DOUB N N 21 0RV CAT SAO SING N N 22 0RV CAT CAS SING N N 23 0RV CAS CAP SING N N 24 0RV CAQ OAF DOUB N N 25 0RV CAQ OAI SING N N 26 0RV CAP OAH DOUB N N 27 0RV CAP OAE SING N N 28 0RV CAC H1 SING N N 29 0RV CAC H2 SING N N 30 0RV CAC H3 SING N N 31 0RV CAD H4 SING N N 32 0RV CAD H5 SING N N 33 0RV CAD H6 SING N N 34 0RV CA H7 SING N N 35 0RV CB H8 SING N N 36 0RV CB H9 SING N N 37 0RV N H10 SING N N 38 0RV CD H12 SING N N 39 0RV CD H13 SING N N 40 0RV CG H14 SING N N 41 0RV CAB H15 SING N N 42 0RV CAB H16 SING N N 43 0RV CAB H17 SING N N 44 0RV OAE H18 SING N N 45 0RV CAZ H19 SING N N 46 0RV CBA H20 SING N N 47 0RV OAI H21 SING N N 48 0RV CAU H22 SING N N 49 0RV OAJ H23 SING N N 50 0RV CAA H24 SING N N 51 0RV CAA H25 SING N N 52 0RV CAA H26 SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0RV SMILES ACDLabs 12.01 "O=C(O)C(C(O)C)C2N=C(C(SC1CC(C(=O)N(C)C)NC1)=C2C)C(=O)O" 0RV InChI InChI 1.03 "InChI=1S/C17H25N3O6S/c1-7-12(11(8(2)21)16(23)24)19-13(17(25)26)14(7)27-9-5-10(18-6-9)15(22)20(3)4/h8-12,18,21H,5-6H2,1-4H3,(H,23,24)(H,25,26)/t8-,9+,10+,11-,12-/m1/s1" 0RV InChIKey InChI 1.03 AGLQJULLKPLWOW-YBXAARCKSA-N 0RV SMILES_CANONICAL CACTVS 3.370 "C[C@@H](O)[C@H]([C@@H]1N=C(C(O)=O)C(=C1C)S[C@@H]2CN[C@@H](C2)C(=O)N(C)C)C(O)=O" 0RV SMILES CACTVS 3.370 "C[CH](O)[CH]([CH]1N=C(C(O)=O)C(=C1C)S[CH]2CN[CH](C2)C(=O)N(C)C)C(O)=O" 0RV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=C(C(=N[C@H]1[C@@H]([C@@H](C)O)C(=O)O)C(=O)O)S[C@H]2C[C@H](NC2)C(=O)N(C)C" 0RV SMILES "OpenEye OEToolkits" 1.7.6 "CC1=C(C(=NC1C(C(C)O)C(=O)O)C(=O)O)SC2CC(NC2)C(=O)N(C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0RV "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-3-methyl-2H-pyrrole-5-carboxylic acid" 0RV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-3-methyl-2H-pyrrole-5-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0RV "Create component" 2012-05-10 RCSB 0RV "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0RV _pdbx_chem_comp_synonyms.name "Meropenem, hydroxylated form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##