data_0TT # _chem_comp.id 0TT _chem_comp.name "1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H28 N4 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-06-10 _chem_comp.pdbx_modified_date 2012-07-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 484.457 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0TT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4FHD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0TT O8 O8 O 0 1 N N N -19.460 -3.946 26.491 5.937 3.550 -0.530 O8 0TT 1 0TT C6 C6 C 0 1 N N N -19.761 -2.574 26.742 6.585 2.281 -0.643 C6 0TT 2 0TT C5 C5 C 0 1 N N R -21.094 -2.197 26.143 6.110 1.363 0.485 C5 0TT 3 0TT O7 O7 O 0 1 N N N -20.907 -2.035 24.723 4.729 0.989 0.281 O7 0TT 4 0TT C4 C4 C 0 1 N N S -22.215 -3.236 26.311 6.888 0.029 0.457 C4 0TT 5 0TT O9 O9 O 0 1 N N N -23.457 -2.525 26.429 7.952 0.050 1.411 O9 0TT 6 0TT C3 C3 C 0 1 N N N -22.072 -4.039 25.049 5.833 -1.030 0.846 C3 0TT 7 0TT C2 C2 C 0 1 N N R -21.741 -2.949 24.005 4.541 -0.210 1.063 C2 0TT 8 0TT N3 N3 N 0 1 N N N -21.018 -3.332 22.781 3.377 -0.956 0.580 N3 0TT 9 0TT CJ CJ C 0 1 N N N -21.521 -2.928 21.455 2.317 -1.329 1.519 CJ 0TT 10 0TT CK CK C 0 1 N N N -19.861 -4.079 22.890 3.293 -1.284 -0.720 CK 0TT 11 0TT O5 O5 O 0 1 N N N -19.364 -4.474 23.944 4.234 -1.048 -1.453 O5 0TT 12 0TT N4 N4 N 0 1 N N N -19.198 -4.360 21.696 2.195 -1.867 -1.229 N4 0TT 13 0TT CL CL C 0 1 N N N -19.289 -3.631 20.535 1.052 -1.929 -0.522 CL 0TT 14 0TT O6 O6 O 0 1 N N N -18.626 -3.957 19.569 0.096 -2.528 -0.965 O6 0TT 15 0TT CI CI C 0 1 N N R -20.412 -2.595 20.440 0.959 -1.241 0.820 CI 0TT 16 0TT C1 C1 C 0 1 N N N -20.981 -2.695 19.008 -0.096 -1.939 1.680 C1 0TT 17 0TT CH CH C 0 1 N N N -19.889 -1.124 20.595 0.566 0.224 0.617 CH 0TT 18 0TT CF CF C 0 1 N N N -19.708 -0.531 21.958 -0.770 0.294 -0.076 CF 0TT 19 0TT CE CE C 0 1 N N N -20.600 0.338 22.495 -1.906 0.427 0.640 CE 0TT 20 0TT CG CG C 0 1 N N N -18.540 -0.900 22.746 -0.849 0.229 -1.488 CG 0TT 21 0TT O4 O4 O 0 1 N N N -17.675 -1.682 22.389 0.163 0.114 -2.156 O4 0TT 22 0TT N2 N2 N 0 1 N N N -18.454 -0.305 23.986 -2.056 0.294 -2.087 N2 0TT 23 0TT CB CB C 0 1 N N N -19.343 0.582 24.539 -3.174 0.421 -1.348 CB 0TT 24 0TT O3 O3 O 0 1 N N N -19.152 1.042 25.666 -4.255 0.479 -1.901 O3 0TT 25 0TT N1 N1 N 0 1 N N N -20.439 0.914 23.765 -3.111 0.490 -0.005 N1 0TT 26 0TT CD CD C 0 1 N N R -21.396 1.859 24.387 -4.345 0.633 0.772 CD 0TT 27 0TT OB OB O 0 1 N N N -22.290 0.993 25.069 -5.285 -0.404 0.417 OB 0TT 28 0TT CM CM C 0 1 N N N -22.283 2.703 23.520 -5.058 1.954 0.410 CM 0TT 29 0TT CA CA C 0 1 N N S -23.448 2.953 24.507 -6.560 1.593 0.449 CA 0TT 30 0TT O1 O1 O 0 1 N N N -23.333 4.245 25.079 -7.236 2.369 1.440 O1 0TT 31 0TT C9 C9 C 0 1 N N R -23.379 1.793 25.532 -6.576 0.096 0.831 C9 0TT 32 0TT C8 C8 C 0 1 N N N -24.573 0.900 25.689 -7.694 -0.633 0.082 C8 0TT 33 0TT OA OA O 0 1 N N N -24.365 0.089 26.868 -7.719 -2.005 0.481 OA 0TT 34 0TT H1 H1 H 0 1 N N N -19.434 -4.099 25.554 6.192 4.184 -1.214 H1 0TT 35 0TT H2 H2 H 0 1 N N N -18.975 -1.946 26.297 6.338 1.832 -1.605 H2 0TT 36 0TT H3 H3 H 0 1 N N N -19.794 -2.405 27.829 7.664 2.416 -0.572 H3 0TT 37 0TT H4 H4 H 0 1 N N N -21.428 -1.247 26.586 6.233 1.855 1.450 H4 0TT 38 0TT H5 H5 H 0 1 N N N -22.021 -3.863 27.194 7.277 -0.165 -0.543 H5 0TT 39 0TT H6 H6 H 0 1 N N N -23.471 -2.045 27.248 8.474 -0.763 1.436 H6 0TT 40 0TT H7 H7 H 0 1 N N N -23.008 -4.560 24.799 5.697 -1.749 0.038 H7 0TT 41 0TT H8 H8 H 0 1 N N N -21.256 -4.772 25.133 6.123 -1.539 1.765 H8 0TT 42 0TT H9 H9 H 0 1 N N N -22.680 -2.449 23.725 4.422 0.039 2.118 H9 0TT 43 0TT H10 H10 H 0 1 N N N -22.153 -2.037 21.582 2.482 -2.349 1.866 H10 0TT 44 0TT H11 H11 H 0 1 N N N -22.126 -3.752 21.049 2.332 -0.649 2.371 H11 0TT 45 0TT H12 H12 H 0 1 N N N -18.603 -5.164 21.684 2.227 -2.249 -2.120 H12 0TT 46 0TT H13 H13 H 0 1 N N N -21.796 -1.967 18.885 0.185 -2.982 1.825 H13 0TT 47 0TT H14 H14 H 0 1 N N N -20.184 -2.479 18.281 -0.163 -1.442 2.648 H14 0TT 48 0TT H15 H15 H 0 1 N N N -21.368 -3.711 18.837 -1.063 -1.890 1.179 H15 0TT 49 0TT H16 H16 H 0 1 N N N -18.908 -1.082 20.098 0.499 0.719 1.586 H16 0TT 50 0TT H17 H17 H 0 1 N N N -20.599 -0.477 20.059 1.320 0.721 0.006 H17 0TT 51 0TT H18 H18 H 0 1 N N N -21.475 0.599 21.919 -1.865 0.482 1.718 H18 0TT 52 0TT H19 H19 H 0 1 N N N -17.659 -0.545 24.542 -2.118 0.250 -3.054 H19 0TT 53 0TT H20 H20 H 0 1 N N N -20.865 2.504 25.102 -4.126 0.598 1.839 H20 0TT 54 0TT H21 H21 H 0 1 N N N -21.791 3.640 23.220 -4.832 2.725 1.146 H21 0TT 55 0TT H22 H22 H 0 1 N N N -22.615 2.160 22.623 -4.771 2.282 -0.589 H22 0TT 56 0TT H23 H23 H 0 1 N N N -24.395 2.868 23.953 -7.015 1.744 -0.530 H23 0TT 57 0TT H24 H24 H 0 1 N N N -24.052 4.390 25.683 -7.205 3.322 1.282 H24 0TT 58 0TT H25 H25 H 0 1 N N N -23.130 2.222 26.514 -6.701 -0.020 1.907 H25 0TT 59 0TT H26 H26 H 0 1 N N N -25.482 1.508 25.808 -8.651 -0.169 0.318 H26 0TT 60 0TT H27 H27 H 0 1 N N N -24.677 0.255 24.804 -7.514 -0.569 -0.991 H27 0TT 61 0TT H28 H28 H 0 1 N N N -25.109 -0.488 26.991 -8.405 -2.529 0.045 H28 0TT 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0TT C1 CI SING N N 1 0TT O6 CL DOUB N N 2 0TT CI CL SING N N 3 0TT CI CH SING N N 4 0TT CI CJ SING N N 5 0TT CL N4 SING N N 6 0TT CH CF SING N N 7 0TT CJ N3 SING N N 8 0TT N4 CK SING N N 9 0TT CF CE DOUB N N 10 0TT CF CG SING N N 11 0TT O4 CG DOUB N N 12 0TT CE N1 SING N N 13 0TT CG N2 SING N N 14 0TT N3 CK SING N N 15 0TT N3 C2 SING N N 16 0TT CK O5 DOUB N N 17 0TT CM CD SING N N 18 0TT CM CA SING N N 19 0TT N1 CD SING N N 20 0TT N1 CB SING N N 21 0TT N2 CB SING N N 22 0TT C2 O7 SING N N 23 0TT C2 C3 SING N N 24 0TT CD OB SING N N 25 0TT CA O1 SING N N 26 0TT CA C9 SING N N 27 0TT CB O3 DOUB N N 28 0TT O7 C5 SING N N 29 0TT C3 C4 SING N N 30 0TT OB C9 SING N N 31 0TT C9 C8 SING N N 32 0TT C8 OA SING N N 33 0TT C5 C4 SING N N 34 0TT C5 C6 SING N N 35 0TT C4 O9 SING N N 36 0TT O8 C6 SING N N 37 0TT O8 H1 SING N N 38 0TT C6 H2 SING N N 39 0TT C6 H3 SING N N 40 0TT C5 H4 SING N N 41 0TT C4 H5 SING N N 42 0TT O9 H6 SING N N 43 0TT C3 H7 SING N N 44 0TT C3 H8 SING N N 45 0TT C2 H9 SING N N 46 0TT CJ H10 SING N N 47 0TT CJ H11 SING N N 48 0TT N4 H12 SING N N 49 0TT C1 H13 SING N N 50 0TT C1 H14 SING N N 51 0TT C1 H15 SING N N 52 0TT CH H16 SING N N 53 0TT CH H17 SING N N 54 0TT CE H18 SING N N 55 0TT N2 H19 SING N N 56 0TT CD H20 SING N N 57 0TT CM H21 SING N N 58 0TT CM H22 SING N N 59 0TT CA H23 SING N N 60 0TT O1 H24 SING N N 61 0TT C9 H25 SING N N 62 0TT C8 H26 SING N N 63 0TT C8 H27 SING N N 64 0TT OA H28 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0TT SMILES ACDLabs 12.01 "O=C1N(C=C(C(=O)N1)CC2(C(=O)NC(=O)N(C2)C3OC(C(O)C3)CO)C)C4OC(CO)C(O)C4" 0TT InChI InChI 1.03 "InChI=1S/C20H28N4O10/c1-20(8-24(19(32)22-17(20)30)15-3-11(28)13(7-26)34-15)4-9-5-23(18(31)21-16(9)29)14-2-10(27)12(6-25)33-14/h5,10-15,25-28H,2-4,6-8H2,1H3,(H,21,29,31)(H,22,30,32)/t10-,11-,12+,13+,14+,15+,20+/m0/s1" 0TT InChIKey InChI 1.03 WCJUEZCRTGBSQU-BZMYHREGSA-N 0TT SMILES_CANONICAL CACTVS 3.370 "C[C@]1(CN([C@H]2C[C@H](O)[C@@H](CO)O2)C(=O)NC1=O)CC3=CN([C@H]4C[C@H](O)[C@@H](CO)O4)C(=O)NC3=O" 0TT SMILES CACTVS 3.370 "C[C]1(CN([CH]2C[CH](O)[CH](CO)O2)C(=O)NC1=O)CC3=CN([CH]4C[CH](O)[CH](CO)O4)C(=O)NC3=O" 0TT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@]1(CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O)CC3=CN(C(=O)NC3=O)[C@H]4C[C@@H]([C@H](O4)CO)O" 0TT SMILES "OpenEye OEToolkits" 1.7.6 "CC1(CN(C(=O)NC1=O)C2CC(C(O2)CO)O)CC3=CN(C(=O)NC3=O)C4CC(C(O4)CO)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0TT "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-5-({(5R)-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]-5-methyl-2,4-dioxohexahydropyrimidin-5-yl}methyl)pyrimidine-2,4(1H,3H)-dione (non-preferred name)" 0TT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-[[(5R)-1-[(2R,4S,5R)-5-(hydroxymethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-5-yl]methyl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0TT "Create component" 2012-06-10 RCSB #