data_0U # _chem_comp.id 0U _chem_comp.name "L-URIDINE-5'-MONOPHOSPHATE" _chem_comp.type "L-RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.181 _chem_comp.one_letter_code U _chem_comp.three_letter_code 0U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1R3O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0U OP3 O3P O 0 1 N Y N -5.079 6.025 103.390 5.309 0.123 -0.181 OP3 0U 1 0U P P P 0 1 N N N -4.674 6.848 102.070 4.116 -0.945 -0.004 P 0U 2 0U OP1 O1P O 0 1 N N N -4.085 5.880 101.100 3.899 -1.658 -1.283 OP1 0U 3 0U OP2 O2P O 0 1 N N N -5.858 7.684 101.727 4.510 -2.005 1.141 OP2 0U 4 0U "O5'" "O5'" O 0 1 N N N -3.511 7.756 102.545 2.766 -0.176 0.418 "O5'" 0U 5 0U "C5'" "C5'" C 0 1 N N N -2.268 7.168 102.852 2.101 0.755 -0.438 "C5'" 0U 6 0U "C4'" "C4'" C 0 1 N N S -1.367 8.232 103.410 0.857 1.299 0.268 "C4'" 0U 7 0U "O4'" "O4'" O 0 1 N N N -1.897 8.778 104.650 -0.116 0.248 0.453 "O4'" 0U 8 0U "C3'" "C3'" C 0 1 N N R -1.171 9.452 102.500 0.146 2.343 -0.622 "C3'" 0U 9 0U "O3'" "O3'" O 0 1 N N N -0.152 9.207 101.515 0.507 3.667 -0.225 "O3'" 0U 10 0U "C2'" "C2'" C 0 1 N N S -0.673 10.463 103.515 -1.357 2.091 -0.367 "C2'" 0U 11 0U "O2'" "O2'" O 0 1 N N N 0.687 10.242 103.786 -1.971 3.253 0.194 "O2'" 0U 12 0U "C1'" "C1'" C 0 1 N N S -1.554 10.162 104.739 -1.377 0.925 0.646 "C1'" 0U 13 0U N1 N1 N 0 1 N N N -2.789 11.035 104.772 -2.492 0.020 0.360 N1 0U 14 0U C2 C2 C 0 1 N N N -2.726 12.317 105.288 -2.242 -1.254 0.006 C2 0U 15 0U O2 O2 O 0 1 N N N -1.708 12.786 105.768 -1.092 -1.640 -0.071 O2 0U 16 0U N3 N3 N 0 1 N N N -3.916 13.016 105.254 -3.247 -2.108 -0.262 N3 0U 17 0U C4 C4 C 0 1 N N N -5.124 12.583 104.737 -4.529 -1.696 -0.181 C4 0U 18 0U O4 O4 O 0 1 N N N -6.125 13.306 104.753 -5.439 -2.467 -0.423 O4 0U 19 0U C5 C5 C 0 1 N N N -5.111 11.252 104.196 -4.806 -0.358 0.190 C5 0U 20 0U C6 C6 C 0 1 N N N -3.971 10.556 104.236 -3.778 0.476 0.460 C6 0U 21 0U HOP3 HOP3 H 0 0 N N N -4.859 5.108 103.272 5.506 0.628 0.620 HOP3 0U 22 0U HOP2 HOP2 H 0 0 N N N -6.137 7.490 100.840 5.316 -2.506 0.953 HOP2 0U 23 0U "H5'" "H5'1" H 0 1 N N N -2.406 6.368 103.595 2.775 1.579 -0.673 "H5'" 0U 24 0U "H5''" "H5'2" H 0 0 N N N -1.822 6.740 101.942 1.805 0.254 -1.360 "H5''" 0U 25 0U "H4'" "H4'" H 0 1 N N N -0.411 7.704 103.538 1.128 1.738 1.228 "H4'" 0U 26 0U "H3'" "H3'" H 0 1 N N N -2.066 9.746 101.932 0.391 2.180 -1.671 "H3'" 0U 27 0U "HO3'" H3T H 0 0 N Y N -0.050 9.976 100.966 0.089 4.363 -0.750 "HO3'" 0U 28 0U "H2'" "H2'" H 0 1 N N N -0.742 11.511 103.187 -1.858 1.805 -1.292 "H2'" 0U 29 0U "HO2'" "HO'2" H 0 0 N N N 0.991 10.879 104.422 -1.933 4.033 -0.376 "HO2'" 0U 30 0U "H1'" "H1'" H 0 1 N N N -1.014 10.381 105.672 -1.449 1.308 1.664 "H1'" 0U 31 0U H3 H3 H 0 1 N N N -3.903 13.936 105.646 -3.050 -3.023 -0.516 H3 0U 32 0U H5 H5 H 0 1 N N N -6.004 10.823 103.766 -5.826 -0.009 0.261 H5 0U 33 0U H6 H6 H 0 1 N N N -3.972 9.558 103.824 -3.970 1.498 0.748 H6 0U 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0U OP3 P SING N N 1 0U OP3 HOP3 SING N N 2 0U P OP1 DOUB N N 3 0U P OP2 SING N N 4 0U P "O5'" SING N N 5 0U OP2 HOP2 SING N N 6 0U "O5'" "C5'" SING N N 7 0U "C5'" "C4'" SING N N 8 0U "C5'" "H5'" SING N N 9 0U "C5'" "H5''" SING N N 10 0U "C4'" "O4'" SING N N 11 0U "C4'" "C3'" SING N N 12 0U "C4'" "H4'" SING N N 13 0U "O4'" "C1'" SING N N 14 0U "C3'" "O3'" SING N N 15 0U "C3'" "C2'" SING N N 16 0U "C3'" "H3'" SING N N 17 0U "O3'" "HO3'" SING N N 18 0U "C2'" "O2'" SING N N 19 0U "C2'" "C1'" SING N N 20 0U "C2'" "H2'" SING N N 21 0U "O2'" "HO2'" SING N N 22 0U "C1'" N1 SING N N 23 0U "C1'" "H1'" SING N N 24 0U N1 C2 SING N N 25 0U N1 C6 SING N N 26 0U C2 O2 DOUB N N 27 0U C2 N3 SING N N 28 0U N3 C4 SING N N 29 0U N3 H3 SING N N 30 0U C4 O4 DOUB N N 31 0U C4 C5 SING N N 32 0U C5 C6 DOUB N N 33 0U C5 H5 SING N N 34 0U C6 H6 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0U SMILES ACDLabs 11.02 "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O" 0U SMILES_CANONICAL CACTVS 3.352 "O[C@@H]1[C@H](O)[C@H](O[C@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O" 0U SMILES CACTVS 3.352 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O" 0U SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1=CN(C(=O)NC1=O)[C@@H]2[C@H]([C@H]([C@@H](O2)COP(=O)(O)O)O)O" 0U SMILES "OpenEye OEToolkits" 1.7.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O" 0U InChI InChI 1.03 "InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m0/s1" 0U InChIKey InChI 1.03 DJJCXFVJDGTHFX-PSQAKQOGSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0U "SYSTEMATIC NAME" ACDLabs 11.02 "1-(5-O-phosphono-beta-L-ribofuranosyl)pyrimidine-2,4(1H,3H)-dione" 0U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2S,3R,4S,5S)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0U "Create component" 2009-07-16 RCSB 0U "Modify descriptor" 2011-06-04 RCSB #