data_0VL # _chem_comp.id 0VL _chem_comp.name "benzyl {2-[(5S)-5-hydroxy-4-oxo-6-{[2-(pyridin-4-yl)ethyl]carbamoyl}-4,5-dihydropyrimidin-2-yl]propan-2-yl}carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H25 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-17 _chem_comp.pdbx_modified_date 2022-06-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.475 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0VL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7N68 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0VL C1 C1 C 0 1 N N N 8.070 29.194 14.294 0.622 0.511 1.773 C1 0VL 1 0VL C2 C2 C 0 1 N N N 7.189 30.435 14.684 1.359 -0.776 1.398 C2 0VL 2 0VL C3 C3 C 0 1 N N N 6.514 31.039 13.463 1.820 -1.489 2.671 C3 0VL 3 0VL C4 C4 C 0 1 N N N 7.466 32.723 15.833 3.493 0.351 1.061 C4 0VL 4 0VL N5 N1 N 0 1 Y N N 4.699 31.452 9.567 -8.846 3.007 -0.369 N5 0VL 5 0VL C6 C5 C 0 1 Y N N 4.020 32.802 17.394 6.683 1.742 -0.095 C6 0VL 6 0VL C7 C6 C 0 1 Y N N 2.705 32.852 17.014 7.766 0.883 -0.122 C7 0VL 7 0VL C8 C7 C 0 1 Y N N 1.697 32.472 17.910 8.786 1.085 -1.033 C8 0VL 8 0VL C9 C8 C 0 1 Y N N 2.029 32.040 19.195 8.723 2.146 -1.917 C9 0VL 9 0VL C10 C9 C 0 1 Y N N 3.351 31.988 19.580 7.640 3.005 -1.890 C10 0VL 10 0VL C14 C10 C 0 1 N N N 2.349 29.535 16.061 -3.038 -1.523 -0.534 C14 0VL 11 0VL C15 C11 C 0 1 N N N 2.316 30.561 13.665 -4.762 0.184 -0.308 C15 0VL 12 0VL C18 C12 C 0 1 Y N N 2.873 31.664 11.071 -7.329 1.824 0.978 C18 0VL 13 0VL C19 C13 C 0 1 Y N N 3.760 32.229 10.155 -8.598 2.308 0.721 C19 0VL 14 0VL C20 C14 C 0 1 Y N N 4.782 30.131 9.864 -7.903 3.271 -1.252 C20 0VL 15 0VL C21 C15 C 0 1 Y N N 3.901 29.552 10.786 -6.610 2.820 -1.063 C21 0VL 16 0VL C22 C16 C 0 1 N N N 4.345 29.122 17.519 -1.283 -3.268 -0.767 C22 0VL 17 0VL C23 C17 C 0 1 N N N 5.656 29.113 17.816 0.092 -3.709 -0.499 C23 0VL 18 0VL C11 C18 C 0 1 Y N N 4.349 32.367 18.686 6.620 2.803 -0.979 C11 0VL 19 0VL C12 C19 C 0 1 N N N 6.107 29.957 15.702 0.433 -1.679 0.625 C12 0VL 20 0VL C13 C20 C 0 1 N N N 3.902 29.563 16.288 -1.665 -2.023 -0.294 C13 0VL 21 0VL C16 C21 C 0 1 N N N 1.971 29.737 12.394 -4.915 1.573 0.316 C16 0VL 22 0VL C17 C22 C 0 1 Y N N 2.952 30.332 11.362 -6.312 2.082 0.072 C17 0VL 23 0VL C5 C23 C 0 1 N N N 5.163 33.234 16.373 5.568 1.518 0.894 C5 0VL 24 0VL N1 N2 N 0 1 N N N 8.058 31.456 15.338 2.524 -0.449 0.573 N1 0VL 25 0VL N2 N3 N 0 1 N N N 6.538 29.524 16.929 0.898 -2.877 0.197 N2 0VL 26 0VL N3 N4 N 0 1 N N N 4.788 29.974 15.395 -0.778 -1.272 0.384 N3 0VL 27 0VL N4 N5 N 0 1 N N N 1.632 29.997 14.866 -3.403 -0.311 -0.071 N4 0VL 28 0VL O1 O1 O 0 1 N N N 6.432 32.706 16.812 4.564 0.651 0.303 O1 0VL 29 0VL O2 O2 O 0 1 N N N 7.855 33.737 15.415 3.400 0.800 2.187 O2 0VL 30 0VL O3 O3 O 0 1 N N N 1.681 29.125 16.938 -3.835 -2.205 -1.147 O3 0VL 31 0VL O4 O4 O 0 1 N N N 3.392 28.671 18.497 -2.148 -4.051 -1.460 O4 0VL 32 0VL O5 O5 O 0 1 N N N 6.021 28.725 18.877 0.493 -4.791 -0.891 O5 0VL 33 0VL H1 H1 H 0 1 N N N 8.543 28.781 15.197 0.294 1.019 0.867 H1 0VL 34 0VL H2 H2 H 0 1 N N N 7.435 28.425 13.829 -0.245 0.267 2.388 H2 0VL 35 0VL H3 H3 H 0 1 N N N 8.848 29.506 13.582 1.292 1.163 2.333 H3 0VL 36 0VL H4 H4 H 0 1 N N N 5.906 31.903 13.769 0.953 -1.733 3.286 H4 0VL 37 0VL H5 H5 H 0 1 N N N 7.280 31.366 12.745 2.345 -2.406 2.404 H5 0VL 38 0VL H6 H6 H 0 1 N N N 5.867 30.285 12.991 2.490 -0.837 3.231 H6 0VL 39 0VL H7 H7 H 0 1 N N N 2.444 33.185 16.020 7.815 0.054 0.569 H7 0VL 40 0VL H8 H8 H 0 1 N N N 0.662 32.513 17.606 9.632 0.415 -1.053 H8 0VL 41 0VL H9 H9 H 0 1 N N N 1.252 31.747 19.886 9.520 2.305 -2.628 H9 0VL 42 0VL H10 H10 H 0 1 N N N 3.613 31.654 20.573 7.591 3.834 -2.581 H10 0VL 43 0VL H11 H11 H 0 1 N N N 3.404 30.537 13.826 -5.481 -0.498 0.144 H11 0VL 44 0VL H12 H12 H 0 1 N N N 1.989 31.601 13.520 -4.944 0.246 -1.381 H12 0VL 45 0VL H13 H13 H 0 1 N N N 2.125 32.279 11.549 -7.133 1.252 1.873 H13 0VL 46 0VL H14 H14 H 0 1 N N N 3.698 33.280 9.916 -9.396 2.111 1.422 H14 0VL 47 0VL H15 H15 H 0 1 N N N 5.534 29.521 9.386 -8.144 3.847 -2.134 H15 0VL 48 0VL H16 H16 H 0 1 N N N 3.976 28.504 11.034 -5.843 3.040 -1.790 H16 0VL 49 0VL H18 H18 H 0 1 N N N 5.385 32.326 18.990 5.774 3.474 -0.958 H18 0VL 50 0VL H19 H19 H 0 1 N N N 0.925 29.890 12.088 -4.732 1.511 1.389 H19 0VL 51 0VL H20 H20 H 0 1 N N N 2.154 28.664 12.550 -4.195 2.256 -0.136 H20 0VL 52 0VL H21 H21 H 0 1 N N N 5.219 34.332 16.330 5.968 1.050 1.793 H21 0VL 53 0VL H22 H22 H 0 1 N N N 4.929 32.839 15.373 5.115 2.475 1.153 H22 0VL 54 0VL H23 H23 H 0 1 N N N 9.038 31.287 15.443 2.599 -0.808 -0.325 H23 0VL 55 0VL H24 H24 H 0 1 N N N 0.634 29.930 14.856 -2.767 0.234 0.419 H24 0VL 56 0VL H25 H25 H 0 1 N N N 2.515 28.736 18.138 -1.772 -4.896 -1.744 H25 0VL 57 0VL H17 H17 H 0 1 N N N 7.514 29.520 17.149 1.809 -3.143 0.399 H17 0VL 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0VL N5 C20 DOUB Y N 1 0VL N5 C19 SING Y N 2 0VL C20 C21 SING Y N 3 0VL C19 C18 DOUB Y N 4 0VL C21 C17 DOUB Y N 5 0VL C18 C17 SING Y N 6 0VL C17 C16 SING N N 7 0VL C16 C15 SING N N 8 0VL C3 C2 SING N N 9 0VL C15 N4 SING N N 10 0VL C1 C2 SING N N 11 0VL C2 N1 SING N N 12 0VL C2 C12 SING N N 13 0VL N4 C14 SING N N 14 0VL N1 C4 SING N N 15 0VL N3 C12 DOUB N N 16 0VL N3 C13 SING N N 17 0VL O2 C4 DOUB N N 18 0VL C12 N2 SING N N 19 0VL C4 O1 SING N N 20 0VL C14 C13 SING N N 21 0VL C14 O3 DOUB N N 22 0VL C13 C22 DOUB N N 23 0VL C5 O1 SING N N 24 0VL C5 C6 SING N N 25 0VL N2 C23 SING N N 26 0VL C7 C6 DOUB Y N 27 0VL C7 C8 SING Y N 28 0VL C6 C11 SING Y N 29 0VL C22 C23 SING N N 30 0VL C22 O4 SING N N 31 0VL C23 O5 DOUB N N 32 0VL C8 C9 DOUB Y N 33 0VL C11 C10 DOUB Y N 34 0VL C9 C10 SING Y N 35 0VL C1 H1 SING N N 36 0VL C1 H2 SING N N 37 0VL C1 H3 SING N N 38 0VL C3 H4 SING N N 39 0VL C3 H5 SING N N 40 0VL C3 H6 SING N N 41 0VL C7 H7 SING N N 42 0VL C8 H8 SING N N 43 0VL C9 H9 SING N N 44 0VL C10 H10 SING N N 45 0VL C15 H11 SING N N 46 0VL C15 H12 SING N N 47 0VL C18 H13 SING N N 48 0VL C19 H14 SING N N 49 0VL C20 H15 SING N N 50 0VL C21 H16 SING N N 51 0VL C11 H18 SING N N 52 0VL C16 H19 SING N N 53 0VL C16 H20 SING N N 54 0VL C5 H21 SING N N 55 0VL C5 H22 SING N N 56 0VL N1 H23 SING N N 57 0VL N4 H24 SING N N 58 0VL O4 H25 SING N N 59 0VL N2 H17 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0VL SMILES ACDLabs 12.01 "OC1=C(N=C(NC1=O)C(C)(C)NC(=O)OCc1ccccc1)C(=O)NCCc1ccncc1" 0VL InChI InChI 1.03 "InChI=1S/C23H25N5O5/c1-23(2,28-22(32)33-14-16-6-4-3-5-7-16)21-26-17(18(29)20(31)27-21)19(30)25-13-10-15-8-11-24-12-9-15/h3-9,11-12,29H,10,13-14H2,1-2H3,(H,25,30)(H,28,32)(H,26,27,31)" 0VL InChIKey InChI 1.03 MJJGKQMTUPRYRX-UHFFFAOYSA-N 0VL SMILES_CANONICAL CACTVS 3.385 "CC(C)(NC(=O)OCc1ccccc1)C2=NC(=C(O)C(=O)N2)C(=O)NCCc3ccncc3" 0VL SMILES CACTVS 3.385 "CC(C)(NC(=O)OCc1ccccc1)C2=NC(=C(O)C(=O)N2)C(=O)NCCc3ccncc3" 0VL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCc2ccncc2)NC(=O)OCc3ccccc3" 0VL SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C1=NC(=C(C(=O)N1)O)C(=O)NCCc2ccncc2)NC(=O)OCc3ccccc3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0VL "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl [2-(5-hydroxy-6-oxo-4-{[2-(pyridin-4-yl)ethyl]carbamoyl}-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate" 0VL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[2-[5-oxidanyl-6-oxidanylidene-4-(2-pyridin-4-ylethylcarbamoyl)-1~{H}-pyrimidin-2-yl]propan-2-yl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0VL "Create component" 2021-06-17 RCSB 0VL "Modify value order" 2021-06-18 RCSB 0VL "Initial release" 2022-06-08 RCSB ##