data_0VR # _chem_comp.id 0VR _chem_comp.name "1-(O-carboxy-phenylamino)-1-deoxy-D-ribulose-5-phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 N O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1-[(2-carboxyphenyl)amino]-1-deoxy-5-O-phosphono-D-ribitol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-07-13 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 351.246 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0VR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4EWN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0VR P P P 0 1 N N N 19.134 17.555 24.767 6.019 0.049 -0.156 P 0VR 1 0VR O1P O1P O 0 1 N N N 20.482 17.884 24.171 6.178 1.121 -1.165 O1P 0VR 2 0VR O2P O2P O 0 1 N N N 18.890 18.349 26.042 6.998 -1.177 -0.518 O2P 0VR 3 0VR O3P O3P O 0 1 N N N 19.187 16.072 25.080 6.395 0.623 1.300 O3P 0VR 4 0VR "O5'" "O5'" O 0 1 N N N 17.952 17.920 23.793 4.494 -0.465 -0.154 "O5'" 0VR 5 0VR "C5'" "C5'" C 0 1 N N N 17.225 16.932 23.112 3.378 0.409 0.030 "C5'" 0VR 6 0VR "C4'" "C4'" C 0 1 N N R 16.153 17.569 22.230 2.081 -0.401 -0.023 "C4'" 0VR 7 0VR "O4'" "O4'" O 0 1 N N N 15.206 18.158 23.038 2.039 -1.305 1.083 "O4'" 0VR 8 0VR "C3'" "C3'" C 0 1 N N S 16.725 18.564 21.229 0.884 0.549 0.049 "C3'" 0VR 9 0VR "O3'" "O3'" O 0 1 N N N 17.767 17.937 20.577 0.926 1.453 -1.057 "O3'" 0VR 10 0VR "C2'" "C2'" C 0 1 N N S 15.757 19.036 20.161 -0.413 -0.261 -0.003 "C2'" 0VR 11 0VR "O2'" "O2'" O 0 1 N N N 14.445 18.747 20.445 -0.455 -1.165 1.103 "O2'" 0VR 12 0VR "C1'" "C1'" C 0 1 N N N 15.843 20.521 19.940 -1.611 0.688 0.068 "C1'" 0VR 13 0VR NH NH N 0 1 N N N 14.648 20.957 19.205 -2.852 -0.087 0.018 NH 0VR 14 0VR C1 C1 C 0 1 Y N N 12.887 22.391 18.956 -5.269 -0.165 -0.097 C1 0VR 15 0VR C2 C2 C 0 1 Y N N 13.864 22.105 19.640 -4.079 0.562 0.069 C2 0VR 16 0VR C3 C3 C 0 1 Y N N 14.373 22.668 20.771 -4.135 1.933 0.284 C3 0VR 17 0VR C4 C4 C 0 1 Y N N 13.466 23.915 21.193 -5.355 2.575 0.335 C4 0VR 18 0VR C5 C5 C 0 1 Y N N 12.263 24.134 20.199 -6.532 1.862 0.172 C5 0VR 19 0VR C6 C6 C 0 1 Y N N 12.134 23.293 19.162 -6.497 0.501 -0.043 C6 0VR 20 0VR C7 C7 C 0 1 N N N 12.550 21.584 17.742 -5.224 -1.618 -0.333 C7 0VR 21 0VR O71 O71 O 0 1 N N N 12.521 20.345 17.962 -6.358 -2.291 -0.613 O71 0VR 22 0VR O72 O72 O 0 1 N N N 12.340 22.307 16.735 -4.165 -2.211 -0.273 O72 0VR 23 0VR H1 H1 H 0 1 N N N 19.641 18.904 26.219 7.935 -0.940 -0.538 H1 0VR 24 0VR H2 H2 H 0 1 N N N 20.035 15.725 24.830 6.313 -0.026 2.012 H2 0VR 25 0VR H3 H3 H 0 1 N N N 16.743 16.268 23.844 3.459 0.903 0.998 H3 0VR 26 0VR H4 H4 H 0 1 N N N 17.911 16.347 22.482 3.370 1.159 -0.761 H4 0VR 27 0VR H5 H5 H 0 1 N N N 15.682 16.759 21.653 2.043 -0.965 -0.955 H5 0VR 28 0VR H6 H6 H 0 1 N N N 14.868 17.515 23.651 2.070 -0.871 1.947 H6 0VR 29 0VR H7 H7 H 0 1 N N N 17.091 19.442 21.782 0.923 1.113 0.981 H7 0VR 30 0VR H8 H8 H 0 1 N N N 18.398 17.625 21.215 0.895 1.019 -1.921 H8 0VR 31 0VR H9 H9 H 0 1 N N N 16.041 18.544 19.219 -0.452 -0.825 -0.935 H9 0VR 32 0VR H10 H10 H 0 1 N N N 14.351 17.813 20.591 -0.424 -0.732 1.967 H10 0VR 33 0VR H11 H11 H 0 1 N N N 16.744 20.757 19.355 -1.572 1.252 1.000 H11 0VR 34 0VR H12 H12 H 0 1 N N N 15.890 21.038 20.910 -1.579 1.378 -0.775 H12 0VR 35 0VR H13 H13 H 0 1 N N N 14.023 20.176 19.194 -2.818 -1.054 -0.050 H13 0VR 36 0VR H14 H14 H 0 1 N N N 15.251 22.326 21.299 -3.223 2.496 0.413 H14 0VR 37 0VR H15 H15 H 0 1 N N N 13.655 24.534 22.057 -5.393 3.642 0.502 H15 0VR 38 0VR H16 H16 H 0 1 N N N 11.560 24.940 20.349 -7.481 2.375 0.213 H16 0VR 39 0VR H17 H17 H 0 1 N N N 11.309 23.440 18.481 -7.417 -0.050 -0.169 H17 0VR 40 0VR H18 H18 H 0 1 N N N 12.283 19.887 17.164 -6.278 -3.243 -0.760 H18 0VR 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0VR O72 C7 DOUB N N 1 0VR C7 O71 SING N N 2 0VR C7 C1 SING N N 3 0VR C1 C6 DOUB Y N 4 0VR C1 C2 SING Y N 5 0VR C6 C5 SING Y N 6 0VR NH C2 SING N N 7 0VR NH "C1'" SING N N 8 0VR C2 C3 DOUB Y N 9 0VR "C1'" "C2'" SING N N 10 0VR "C2'" "O2'" SING N N 11 0VR "C2'" "C3'" SING N N 12 0VR C5 C4 DOUB Y N 13 0VR "O3'" "C3'" SING N N 14 0VR C3 C4 SING Y N 15 0VR "C3'" "C4'" SING N N 16 0VR "C4'" "O4'" SING N N 17 0VR "C4'" "C5'" SING N N 18 0VR "C5'" "O5'" SING N N 19 0VR "O5'" P SING N N 20 0VR O1P P DOUB N N 21 0VR P O3P SING N N 22 0VR P O2P SING N N 23 0VR O2P H1 SING N N 24 0VR O3P H2 SING N N 25 0VR "C5'" H3 SING N N 26 0VR "C5'" H4 SING N N 27 0VR "C4'" H5 SING N N 28 0VR "O4'" H6 SING N N 29 0VR "C3'" H7 SING N N 30 0VR "O3'" H8 SING N N 31 0VR "C2'" H9 SING N N 32 0VR "O2'" H10 SING N N 33 0VR "C1'" H11 SING N N 34 0VR "C1'" H12 SING N N 35 0VR NH H13 SING N N 36 0VR C3 H14 SING N N 37 0VR C4 H15 SING N N 38 0VR C5 H16 SING N N 39 0VR C6 H17 SING N N 40 0VR O71 H18 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0VR SMILES ACDLabs 12.01 "O=P(O)(O)OCC(O)C(O)C(O)CNc1ccccc1C(=O)O" 0VR InChI InChI 1.03 "InChI=1S/C12H18NO9P/c14-9(11(16)10(15)6-22-23(19,20)21)5-13-8-4-2-1-3-7(8)12(17)18/h1-4,9-11,13-16H,5-6H2,(H,17,18)(H2,19,20,21)/t9-,10+,11-/m0/s1" 0VR InChIKey InChI 1.03 AULMJMUNCOBRHC-AXFHLTTASA-N 0VR SMILES_CANONICAL CACTVS 3.370 "O[C@@H](CNc1ccccc1C(O)=O)[C@H](O)[C@H](O)CO[P](O)(O)=O" 0VR SMILES CACTVS 3.370 "O[CH](CNc1ccccc1C(O)=O)[CH](O)[CH](O)CO[P](O)(O)=O" 0VR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(c(c1)C(=O)O)NC[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O" 0VR SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(c(c1)C(=O)O)NCC(C(C(COP(=O)(O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0VR "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(2-carboxyphenyl)amino]-1-deoxy-5-O-phosphono-D-ribitol" 0VR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[[(2S,3S,4R)-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]amino]benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0VR "Create component" 2012-07-13 RCSB 0VR "Initial release" 2012-11-30 RCSB 0VR "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0VR _pdbx_chem_comp_synonyms.name "1-[(2-carboxyphenyl)amino]-1-deoxy-5-O-phosphono-D-ribitol" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##