data_0WD # _chem_comp.id 0WD _chem_comp.name "[[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 N7 O17 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-07-23 _chem_comp.pdbx_modified_date 2012-09-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 745.421 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0WD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4FS3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0WD O7N O7N O 0 1 N N N 107.556 65.235 32.041 7.606 -4.823 -2.425 O7N 0WD 1 0WD C7N C7N C 0 1 N N N 107.738 64.250 32.733 7.600 -3.879 -3.194 C7N 0WD 2 0WD N7N N7N N 0 1 N N N 106.935 63.962 33.757 7.702 -4.090 -4.521 N7N 0WD 3 0WD C3N C3N C 0 1 N N N 108.941 63.386 32.456 7.481 -2.561 -2.695 C3N 0WD 4 0WD C2N C2N C 0 1 N N N 109.504 62.635 33.498 7.374 -2.365 -1.368 C2N 0WD 5 0WD C4N C4N C 0 1 N N N 109.518 63.361 31.178 7.481 -1.407 -3.657 C4N 0WD 6 0WD C5N C5N C 0 1 N N N 110.676 62.580 30.989 7.740 -0.112 -2.940 C5N 0WD 7 0WD C6N C6N C 0 1 N N N 111.188 61.854 32.047 7.625 -0.008 -1.635 C6N 0WD 8 0WD N1N N1N N 0 1 N N N 110.614 61.895 33.274 7.267 -1.101 -0.860 N1N 0WD 9 0WD C1M C1M C 0 1 N N R 111.204 61.049 34.319 6.768 -0.901 0.503 C1M 0WD 10 0WD C2M C2M C 0 1 N N R 111.407 61.577 35.731 7.848 -0.224 1.376 C2M 0WD 11 0WD O2M O2M O 0 1 N N N 112.621 62.264 35.871 8.540 -1.198 2.161 O2M 0WD 12 0WD C3M C3M C 0 1 N N S 111.406 60.299 36.559 7.048 0.735 2.286 C3M 0WD 13 0WD O3M O3M O 0 1 N N N 112.652 59.609 36.544 7.224 0.384 3.660 O3M 0WD 14 0WD O4M O4M O 0 1 N N N 110.300 59.964 34.535 5.661 0.026 0.501 O4M 0WD 15 0WD C4M C4M C 0 1 N N R 110.441 59.394 35.839 5.580 0.524 1.855 C4M 0WD 16 0WD C5M C5M C 0 1 N N N 109.092 59.281 36.550 4.819 1.851 1.889 C5M 0WD 17 0WD O5M O5M O 0 1 N N N 108.390 60.501 36.351 3.454 1.627 1.528 O5M 0WD 18 0WD PN PN P 0 1 N N N 106.831 60.709 36.671 2.361 2.807 1.460 PN 0WD 19 0WD O1N O1N O 0 1 N N N 106.057 59.467 36.246 2.758 3.839 0.290 O1N 0WD 20 0WD O2N O2N O 0 1 N N N 106.595 62.035 36.009 2.322 3.520 2.756 O2N 0WD 21 0WD O3P O3P O 0 1 N N N 106.954 60.856 38.271 0.911 2.177 1.151 O3P 0WD 22 0WD PA PA P 0 1 N N N 105.804 60.610 39.368 -0.596 2.735 1.255 PA 0WD 23 0WD O1A O1A O 0 1 N N N 104.522 60.193 38.686 -0.658 4.098 0.683 O1A 0WD 24 0WD O2A O2A O 0 1 N N N 105.845 61.762 40.335 -1.045 2.780 2.801 O2A 0WD 25 0WD O5B O5B O 0 1 N N N 106.444 59.393 40.188 -1.585 1.764 0.437 O5B 0WD 26 0WD C5B C5B C 0 1 N N N 107.572 59.652 41.015 -2.974 2.044 0.252 C5B 0WD 27 0WD C4B C4B C 0 1 N N R 107.936 58.413 41.802 -3.616 0.923 -0.567 C4B 0WD 28 0WD C3B C3B C 0 1 N N S 107.099 58.265 43.065 -5.089 1.268 -0.864 C3B 0WD 29 0WD O3B O3B O 0 1 N N N 106.882 56.860 43.168 -5.312 1.339 -2.274 O3B 0WD 30 0WD "P2'" "P2'" P 0 1 N N N 106.313 56.010 44.419 -5.834 2.670 -3.013 "P2'" 0WD 31 0WD OP2 OP2 O 0 1 N N N 107.287 56.151 45.560 -5.846 2.430 -4.605 OP2 0WD 32 0WD OP1 OP1 O 0 1 N N N 104.965 56.627 44.718 -7.325 3.013 -2.511 OP1 0WD 33 0WD OP3 OP3 O 0 1 N N N 106.341 54.604 43.839 -4.933 3.799 -2.692 OP3 0WD 34 0WD O4B O4B O 0 1 N N N 109.319 58.429 42.215 -3.608 -0.300 0.187 O4B 0WD 35 0WD C1B C1B C 0 1 N N R 109.337 58.055 43.595 -4.810 -1.020 -0.162 C1B 0WD 36 0WD C2B C2B C 0 1 N N R 108.088 58.767 44.090 -5.885 0.093 -0.247 C2B 0WD 37 0WD O2B O2B O 0 1 N N N 107.757 58.500 45.444 -6.959 -0.300 -1.104 O2B 0WD 38 0WD N9A N9A N 0 1 Y N N 110.482 58.488 44.422 -5.152 -1.990 0.880 N9A 0WD 39 0WD C4A C4A C 0 1 Y N N 111.175 57.718 45.243 -5.907 -3.124 0.718 C4A 0WD 40 0WD N3A N3A N 0 1 Y N N 111.039 56.300 45.490 -6.530 -3.698 -0.306 N3A 0WD 41 0WD C2A C2A C 0 1 Y N N 111.875 55.704 46.366 -7.194 -4.823 -0.143 C2A 0WD 42 0WD N1A N1A N 0 1 Y N N 112.828 56.398 47.017 -7.278 -5.433 1.025 N1A 0WD 43 0WD C5A C5A C 0 1 Y N N 112.196 58.507 45.899 -5.965 -3.735 1.982 C5A 0WD 44 0WD C6A C6A C 0 1 Y N N 113.040 57.736 46.840 -6.687 -4.935 2.106 C6A 0WD 45 0WD N6A N6A N 0 1 N N N 114.009 58.380 47.519 -6.780 -5.581 3.326 N6A 0WD 46 0WD N7A N7A N 0 1 Y N N 112.045 59.766 45.445 -5.257 -2.957 2.835 N7A 0WD 47 0WD C8A C8A C 0 1 Y N N 111.002 59.734 44.559 -4.774 -1.935 2.189 C8A 0WD 48 0WD H1 H1 H 0 1 N N N 106.163 64.561 33.971 7.780 -4.994 -4.864 H1 0WD 49 0WD H2 H2 H 0 1 N N N 107.104 63.147 34.311 7.697 -3.338 -5.134 H2 0WD 50 0WD H3 H3 H 0 1 N N N 109.052 62.647 34.479 7.373 -3.214 -0.700 H3 0WD 51 0WD H4 H4 H 0 1 N N N 109.776 64.398 30.916 8.259 -1.564 -4.404 H4 0WD 52 0WD H5 H5 H 0 1 N N N 111.160 62.549 30.024 8.029 0.756 -3.513 H5 0WD 53 0WD H6 H6 H 0 1 N N N 112.064 61.241 31.893 7.815 0.942 -1.158 H6 0WD 54 0WD H7 H7 H 0 1 N N N 112.166 60.657 33.958 6.466 -1.853 0.939 H7 0WD 55 0WD H8 H8 H 0 1 N N N 110.552 62.206 36.019 8.549 0.332 0.754 H8 0WD 56 0WD H9 H9 H 0 1 N N N 112.708 62.576 36.764 9.229 -0.827 2.729 H9 0WD 57 0WD H10 H10 H 0 1 N N N 111.060 60.503 37.583 7.352 1.767 2.114 H10 0WD 58 0WD H11 H11 H 0 1 N N N 112.587 58.825 37.076 8.139 0.442 3.967 H11 0WD 59 0WD H12 H12 H 0 1 N N N 110.883 58.390 35.764 5.094 -0.208 2.500 H12 0WD 60 0WD H13 H13 H 0 1 N N N 108.516 58.445 36.127 4.865 2.270 2.894 H13 0WD 61 0WD H14 H14 H 0 1 N N N 109.249 59.111 37.625 5.271 2.548 1.184 H14 0WD 62 0WD H15 H15 H 0 1 N N N 105.457 59.692 35.545 2.802 3.440 -0.589 H15 0WD 63 0WD H16 H16 H 0 1 N N N 104.976 62.137 40.419 -1.028 1.919 3.240 H16 0WD 64 0WD H17 H17 H 0 1 N N N 108.425 59.946 40.385 -3.464 2.111 1.224 H17 0WD 65 0WD H18 H18 H 0 1 N N N 107.332 60.468 41.712 -3.086 2.991 -0.277 H18 0WD 66 0WD H19 H19 H 0 1 N N N 107.757 57.534 41.166 -3.070 0.787 -1.501 H19 0WD 67 0WD H20 H20 H 0 1 N N N 106.177 58.863 43.034 -5.363 2.210 -0.388 H20 0WD 68 0WD H21 H21 H 0 1 N N N 107.735 55.325 45.698 -6.150 3.192 -5.116 H21 0WD 69 0WD H22 H22 H 0 1 N N N 104.277 56.013 44.488 -7.970 2.316 -2.690 H22 0WD 70 0WD H23 H23 H 0 1 N N N 109.196 56.969 43.698 -4.694 -1.515 -1.126 H23 0WD 71 0WD H24 H24 H 0 1 N N N 108.224 59.849 43.946 -6.256 0.352 0.745 H24 0WD 72 0WD H25 H25 H 0 1 N N N 108.434 58.851 46.011 -7.488 -1.033 -0.761 H25 0WD 73 0WD H26 H26 H 0 1 N N N 111.777 54.644 46.549 -7.690 -5.262 -0.996 H26 0WD 74 0WD H27 H27 H 0 1 N N N 114.485 57.733 48.115 -6.344 -5.207 4.108 H27 0WD 75 0WD H28 H28 H 0 1 N N N 114.660 58.779 46.873 -7.280 -6.409 3.399 H28 0WD 76 0WD H29 H29 H 0 1 N N N 110.635 60.601 44.030 -4.167 -1.156 2.626 H29 0WD 77 0WD H30 H30 H 0 1 N N N 108.754 62.986 30.481 6.512 -1.353 -4.153 H30 0WD 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0WD C5N C4N SING N N 1 0WD C5N C6N DOUB N N 2 0WD C4N C3N SING N N 3 0WD O7N C7N DOUB N N 4 0WD C6N N1N SING N N 5 0WD C3N C7N SING N N 6 0WD C3N C2N DOUB N N 7 0WD C7N N7N SING N N 8 0WD N1N C2N SING N N 9 0WD N1N C1M SING N N 10 0WD C1M O4M SING N N 11 0WD C1M C2M SING N N 12 0WD O4M C4M SING N N 13 0WD C2M O2M SING N N 14 0WD C2M C3M SING N N 15 0WD C4M C5M SING N N 16 0WD C4M C3M SING N N 17 0WD O2N PN DOUB N N 18 0WD O1N PN SING N N 19 0WD O5M C5M SING N N 20 0WD O5M PN SING N N 21 0WD O3M C3M SING N N 22 0WD PN O3P SING N N 23 0WD O3P PA SING N N 24 0WD O1A PA DOUB N N 25 0WD PA O5B SING N N 26 0WD PA O2A SING N N 27 0WD O5B C5B SING N N 28 0WD C5B C4B SING N N 29 0WD C4B O4B SING N N 30 0WD C4B C3B SING N N 31 0WD O4B C1B SING N N 32 0WD C3B O3B SING N N 33 0WD C3B C2B SING N N 34 0WD O3B "P2'" SING N N 35 0WD C1B C2B SING N N 36 0WD C1B N9A SING N N 37 0WD OP3 "P2'" DOUB N N 38 0WD C2B O2B SING N N 39 0WD "P2'" OP1 SING N N 40 0WD "P2'" OP2 SING N N 41 0WD N9A C8A SING Y N 42 0WD N9A C4A SING Y N 43 0WD C8A N7A DOUB Y N 44 0WD C4A N3A DOUB Y N 45 0WD C4A C5A SING Y N 46 0WD N7A C5A SING Y N 47 0WD N3A C2A SING Y N 48 0WD C5A C6A DOUB Y N 49 0WD C2A N1A DOUB Y N 50 0WD C6A N1A SING Y N 51 0WD C6A N6A SING N N 52 0WD N7N H1 SING N N 53 0WD N7N H2 SING N N 54 0WD C2N H3 SING N N 55 0WD C4N H4 SING N N 56 0WD C5N H5 SING N N 57 0WD C6N H6 SING N N 58 0WD C1M H7 SING N N 59 0WD C2M H8 SING N N 60 0WD O2M H9 SING N N 61 0WD C3M H10 SING N N 62 0WD O3M H11 SING N N 63 0WD C4M H12 SING N N 64 0WD C5M H13 SING N N 65 0WD C5M H14 SING N N 66 0WD O1N H15 SING N N 67 0WD O2A H16 SING N N 68 0WD C5B H17 SING N N 69 0WD C5B H18 SING N N 70 0WD C4B H19 SING N N 71 0WD C3B H20 SING N N 72 0WD OP2 H21 SING N N 73 0WD OP1 H22 SING N N 74 0WD C1B H23 SING N N 75 0WD C2B H24 SING N N 76 0WD O2B H25 SING N N 77 0WD C2A H26 SING N N 78 0WD N6A H27 SING N N 79 0WD N6A H28 SING N N 80 0WD C8A H29 SING N N 81 0WD C4N H30 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0WD InChI InChI 1.03 ;InChI=1S/C21H30N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-15(31)16(44-46(33,34)35)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)14(30)20(42-10)27-3-1-2-9(4-27)18(23)32/h1,3-4,7-8,10-11,13-16,20-21,29-31H,2,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1 ; 0WD InChIKey InChI 1.03 ONOVTRNLNDQWGA-NNYOXOHSSA-N 0WD SMILES_CANONICAL CACTVS 3.370 "NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" 0WD SMILES CACTVS 3.370 "NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O[P](O)(O)=O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" 0WD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)OP(=O)(O)O)O)N" 0WD SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)OP(=O)(O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0WD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0WD "Create component" 2012-07-23 RCSB 0WD "Initial release" 2012-09-14 RCSB #