data_0Y0 # _chem_comp.id 0Y0 _chem_comp.name "5'-{[(3S)-3-amino-3-carboxypropyl]amino}-5'-deoxyadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H21 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-09-07 _chem_comp.pdbx_modified_date 2014-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.360 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0Y0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GOM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0Y0 O O O 0 1 N N N 92.683 22.408 71.042 6.693 -2.957 -0.185 O 0Y0 1 0Y0 C C C 0 1 N N N 93.355 23.167 70.254 6.957 -1.644 -0.274 C 0Y0 2 0Y0 OXT OXT O 0 1 N N N 94.188 22.612 69.416 7.879 -1.258 -0.953 OXT 0Y0 3 0Y0 CA CA C 0 1 N N S 93.222 24.644 70.279 6.104 -0.651 0.472 CA 0Y0 4 0Y0 N N N 0 1 N N N 91.941 25.117 70.828 6.837 0.614 0.616 N 0Y0 5 0Y0 CB CB C 0 1 N N N 94.400 25.159 71.150 4.810 -0.404 -0.305 CB 0Y0 6 0Y0 CAS CAS C 0 1 N N N 94.288 24.975 72.654 3.890 0.506 0.512 CAS 0Y0 7 0Y0 NAR NAR N 0 1 N N N 95.500 24.934 73.428 2.647 0.743 -0.235 NAR 0Y0 8 0Y0 CAF CAF C 0 1 N N N 95.205 24.833 74.864 1.738 1.615 0.520 CAF 0Y0 9 0Y0 CAA CAA C 0 1 N N R 96.201 25.264 75.814 0.457 1.839 -0.287 CAA 0Y0 10 0Y0 OAE OAE O 0 1 N N N 95.635 24.923 77.083 -0.267 0.603 -0.406 OAE 0Y0 11 0Y0 CAB CAB C 0 1 N N S 97.514 24.538 75.759 -0.458 2.837 0.447 CAB 0Y0 12 0Y0 OAH OAH O 0 1 N N N 98.536 25.435 75.820 -0.697 3.988 -0.366 OAH 0Y0 13 0Y0 CAC CAC C 0 1 N N R 97.566 23.614 76.918 -1.772 2.052 0.674 CAC 0Y0 14 0Y0 OAI OAI O 0 1 N N N 98.852 23.445 77.405 -2.910 2.883 0.439 OAI 0Y0 15 0Y0 CAD CAD C 0 1 N N R 96.676 24.321 77.883 -1.672 0.935 -0.397 CAD 0Y0 16 0Y0 N9 N9 N 0 1 Y N N 95.958 23.555 78.888 -2.475 -0.227 -0.007 N9 0Y0 17 0Y0 C8 C8 C 0 1 Y N N 95.523 22.267 78.821 -2.047 -1.292 0.728 C8 0Y0 18 0Y0 N7 N7 N 0 1 Y N N 94.834 22.005 79.951 -3.021 -2.141 0.887 N7 0Y0 19 0Y0 C5 C5 C 0 1 Y N N 94.795 23.112 80.703 -4.131 -1.676 0.267 C5 0Y0 20 0Y0 C4 C4 C 0 1 Y N N 95.500 24.130 80.023 -3.796 -0.439 -0.309 C4 0Y0 21 0Y0 N3 N3 N 0 1 Y N N 95.609 25.354 80.593 -4.725 0.235 -0.979 N3 0Y0 22 0Y0 C2 C2 C 0 1 Y N N 95.051 25.604 81.802 -5.945 -0.245 -1.101 C2 0Y0 23 0Y0 N1 N1 N 0 1 Y N N 94.354 24.638 82.471 -6.308 -1.401 -0.574 N1 0Y0 24 0Y0 C6 C6 C 0 1 Y N N 94.226 23.405 81.937 -5.445 -2.148 0.106 C6 0Y0 25 0Y0 N6 N6 N 0 1 N N N 93.493 22.326 82.637 -5.835 -3.357 0.655 N6 0Y0 26 0Y0 H1 H1 H 0 1 N N N 92.913 21.500 70.881 7.267 -3.555 -0.682 H1 0Y0 27 0Y0 H2 H2 H 0 1 N N N 93.349 25.036 69.259 5.865 -1.047 1.459 H2 0Y0 28 0Y0 H3 H3 H 0 1 N N N 91.921 26.117 70.814 7.664 0.490 1.181 H3 0Y0 29 0Y0 H4 H4 H 0 1 N N N 91.189 24.761 70.273 7.070 1.002 -0.286 H4 0Y0 30 0Y0 H6 H6 H 0 1 N N N 95.309 24.634 70.820 5.043 0.074 -1.256 H6 0Y0 31 0Y0 H7 H7 H 0 1 N N N 94.508 26.236 70.956 4.309 -1.355 -0.489 H7 0Y0 32 0Y0 H8 H8 H 0 1 N N N 93.683 25.809 73.040 3.657 0.028 1.463 H8 0Y0 33 0Y0 H9 H9 H 0 1 N N N 93.758 24.027 72.828 4.390 1.457 0.695 H9 0Y0 34 0Y0 H10 H10 H 0 1 N N N 96.040 24.140 73.148 2.841 1.127 -1.148 H10 0Y0 35 0Y0 H12 H12 H 0 1 N N N 94.301 25.432 75.050 1.490 1.145 1.472 H12 0Y0 36 0Y0 H13 H13 H 0 1 N N N 94.994 23.775 75.076 2.223 2.574 0.704 H13 0Y0 37 0Y0 H14 H14 H 0 1 N N N 96.369 26.348 75.737 0.706 2.219 -1.278 H14 0Y0 38 0Y0 H15 H15 H 0 1 N N N 97.559 23.953 74.829 -0.016 3.130 1.400 H15 0Y0 39 0Y0 H16 H16 H 0 1 N N N 99.366 24.973 75.785 -1.268 4.650 0.047 H16 0Y0 40 0Y0 H17 H17 H 0 1 N N N 97.117 22.649 76.642 -1.804 1.627 1.677 H17 0Y0 41 0Y0 H18 H18 H 0 1 N N N 98.835 22.848 78.143 -2.967 3.648 1.027 H18 0Y0 42 0Y0 H19 H19 H 0 1 N N N 97.255 25.113 78.380 -1.985 1.309 -1.372 H19 0Y0 43 0Y0 H20 H20 H 0 1 N N N 95.698 21.578 78.008 -1.048 -1.414 1.119 H20 0Y0 44 0Y0 H21 H21 H 0 1 N N N 95.159 26.583 82.244 -6.676 0.327 -1.652 H21 0Y0 45 0Y0 H22 H22 H 0 1 N N N 93.144 22.670 83.509 -5.198 -3.889 1.159 H22 0Y0 46 0Y0 H23 H23 H 0 1 N N N 92.728 22.020 82.070 -6.744 -3.673 0.537 H23 0Y0 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0Y0 OXT C DOUB N N 1 0Y0 C CA SING N N 2 0Y0 C O SING N N 3 0Y0 CA N SING N N 4 0Y0 CA CB SING N N 5 0Y0 CB CAS SING N N 6 0Y0 CAS NAR SING N N 7 0Y0 NAR CAF SING N N 8 0Y0 CAF CAA SING N N 9 0Y0 CAB CAA SING N N 10 0Y0 CAB OAH SING N N 11 0Y0 CAB CAC SING N N 12 0Y0 CAA OAE SING N N 13 0Y0 CAC OAI SING N N 14 0Y0 CAC CAD SING N N 15 0Y0 OAE CAD SING N N 16 0Y0 CAD N9 SING N N 17 0Y0 C8 N9 SING Y N 18 0Y0 C8 N7 DOUB Y N 19 0Y0 N9 C4 SING Y N 20 0Y0 N7 C5 SING Y N 21 0Y0 C4 N3 DOUB Y N 22 0Y0 C4 C5 SING Y N 23 0Y0 N3 C2 SING Y N 24 0Y0 C5 C6 DOUB Y N 25 0Y0 C2 N1 DOUB Y N 26 0Y0 C6 N1 SING Y N 27 0Y0 C6 N6 SING N N 28 0Y0 O H1 SING N N 29 0Y0 CA H2 SING N N 30 0Y0 N H3 SING N N 31 0Y0 N H4 SING N N 32 0Y0 CB H6 SING N N 33 0Y0 CB H7 SING N N 34 0Y0 CAS H8 SING N N 35 0Y0 CAS H9 SING N N 36 0Y0 NAR H10 SING N N 37 0Y0 CAF H12 SING N N 38 0Y0 CAF H13 SING N N 39 0Y0 CAA H14 SING N N 40 0Y0 CAB H15 SING N N 41 0Y0 OAH H16 SING N N 42 0Y0 CAC H17 SING N N 43 0Y0 OAI H18 SING N N 44 0Y0 CAD H19 SING N N 45 0Y0 C8 H20 SING N N 46 0Y0 C2 H21 SING N N 47 0Y0 N6 H22 SING N N 48 0Y0 N6 H23 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0Y0 SMILES ACDLabs 12.01 "O=C(O)C(N)CCNCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" 0Y0 InChI InChI 1.03 "InChI=1S/C14H21N7O5/c15-6(14(24)25)1-2-17-3-7-9(22)10(23)13(26-7)21-5-20-8-11(16)18-4-19-12(8)21/h4-7,9-10,13,17,22-23H,1-3,15H2,(H,24,25)(H2,16,18,19)/t6-,7+,9+,10+,13+/m0/s1" 0Y0 InChIKey InChI 1.03 WSOGVCAFRBSBRE-WFMPWKQPSA-N 0Y0 SMILES_CANONICAL CACTVS 3.370 "N[C@@H](CCNC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O" 0Y0 SMILES CACTVS 3.370 "N[CH](CCNC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O" 0Y0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CNCC[C@@H](C(=O)O)N)O)O)N" 0Y0 SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CNCCC(C(=O)O)N)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0Y0 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-{[(3S)-3-amino-3-carboxypropyl]amino}-5'-deoxyadenosine" 0Y0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0Y0 "Create component" 2012-09-07 RCSB 0Y0 "Initial release" 2014-02-26 RCSB #