data_0Y2 # _chem_comp.id 0Y2 _chem_comp.name "5'-{[(3S)-3-amino-3-carboxypropyl][2-(1-benzothiophen-3-yl)ethyl]amino}-5'-deoxyadenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 N7 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-09-07 _chem_comp.pdbx_modified_date 2014-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 527.596 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0Y2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GOO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0Y2 CBC CBC C 0 1 Y N N 98.063 -12.482 55.587 -5.392 -1.110 -0.542 CBC 0Y2 1 0Y2 CBG CBG C 0 1 Y N N 99.049 -13.146 54.915 -5.957 0.033 0.062 CBG 0Y2 2 0Y2 CBH CBH C 0 1 Y N N 98.776 -14.406 54.400 -7.255 0.026 0.473 CBH 0Y2 3 0Y2 CBI CBI C 0 1 Y N N 97.505 -15.009 54.546 -8.043 -1.104 0.306 CBI 0Y2 4 0Y2 CBJ CBJ C 0 1 Y N N 96.481 -14.348 55.218 -7.518 -2.232 -0.279 CBJ 0Y2 5 0Y2 CBD CBD C 0 1 Y N N 96.698 -13.081 55.760 -6.188 -2.247 -0.709 CBD 0Y2 6 0Y2 S1E S1E S 0 1 Y N N 95.773 -11.839 56.688 -5.247 -3.522 -1.474 S1E 0Y2 7 0Y2 CBF CBF C 0 1 Y N N 97.010 -10.781 56.793 -3.817 -2.511 -1.552 CBF 0Y2 8 0Y2 CBB CBB C 0 1 Y N N 98.126 -11.202 56.202 -4.043 -1.317 -1.042 CBB 0Y2 9 0Y2 CBA CBA C 0 1 N N N 99.459 -10.398 56.136 -2.983 -0.247 -0.982 CBA 0Y2 10 0Y2 CAZ CAZ C 0 1 N N N 99.997 -9.656 57.364 -2.300 -0.282 0.386 CAZ 0Y2 11 0Y2 NAR NAR N 0 1 N N N 101.442 -9.908 57.711 -1.267 0.761 0.444 NAR 0Y2 12 0Y2 CAS CAS C 0 1 N N N 102.184 -8.609 57.633 -1.867 2.100 0.387 CAS 0Y2 13 0Y2 CB CB C 0 1 N N N 101.772 -7.534 56.598 -0.787 3.129 0.047 CB 0Y2 14 0Y2 CA CA C 0 1 N N S 101.493 -6.132 57.077 -1.394 4.534 0.074 CA 0Y2 15 0Y2 C C C 0 1 N N N 100.037 -5.972 57.684 -0.305 5.556 -0.124 C 0Y2 16 0Y2 OXT OXT O 0 1 N N N 99.237 -5.156 57.178 -0.128 6.047 -1.213 OXT 0Y2 17 0Y2 O O O 0 1 N N N 99.655 -6.645 58.687 0.470 5.919 0.910 O 0Y2 18 0Y2 N N N 0 1 N N N 102.440 -5.696 58.024 -2.385 4.660 -1.003 N 0Y2 19 0Y2 CAF CAF C 0 1 N N N 101.416 -10.336 59.139 -0.432 0.609 1.643 CAF 0Y2 20 0Y2 CAA CAA C 0 1 N N R 101.805 -11.698 59.489 0.550 -0.547 1.438 CAA 0Y2 21 0Y2 OAE OAE O 0 1 N N N 102.507 -11.676 60.785 1.497 -0.222 0.398 OAE 0Y2 22 0Y2 CAB CAB C 0 1 N N S 100.629 -12.600 59.647 1.410 -0.753 2.705 CAB 0Y2 23 0Y2 OAH OAH O 0 1 N N N 100.845 -13.777 58.966 0.884 -1.819 3.499 OAH 0Y2 24 0Y2 CAC CAC C 0 1 N N R 100.525 -12.904 61.078 2.805 -1.125 2.155 CAC 0Y2 25 0Y2 OAI OAI O 0 1 N N N 100.014 -14.147 61.173 3.183 -2.432 2.592 OAI 0Y2 26 0Y2 CAD CAD C 0 1 N N R 101.965 -12.726 61.555 2.623 -1.100 0.621 CAD 0Y2 27 0Y2 N9 N9 N 0 1 Y N N 102.292 -12.545 62.979 3.823 -0.564 -0.026 N9 0Y2 28 0Y2 C8 C8 C 0 1 Y N N 101.518 -12.012 63.962 4.059 0.743 -0.334 C8 0Y2 29 0Y2 N7 N7 N 0 1 Y N N 102.184 -12.012 65.142 5.224 0.863 -0.901 N7 0Y2 30 0Y2 C5 C5 C 0 1 Y N N 103.422 -12.542 64.935 5.808 -0.356 -0.993 C5 0Y2 31 0Y2 C4 C4 C 0 1 Y N N 103.502 -12.892 63.551 4.919 -1.285 -0.428 C4 0Y2 32 0Y2 N3 N3 N 0 1 Y N N 104.660 -13.480 63.069 5.264 -2.568 -0.390 N3 0Y2 33 0Y2 C2 C2 C 0 1 Y N N 105.707 -13.710 63.911 6.422 -2.966 -0.872 C2 0Y2 34 0Y2 N1 N1 N 0 1 Y N N 105.670 -13.396 65.227 7.291 -2.130 -1.409 N1 0Y2 35 0Y2 C6 C6 C 0 1 Y N N 104.543 -12.818 65.761 7.030 -0.830 -1.499 C6 0Y2 36 0Y2 N6 N6 N 0 1 N N N 104.470 -12.487 67.151 7.948 0.039 -2.063 N6 0Y2 37 0Y2 H1 H1 H 0 1 N N N 100.024 -12.699 54.786 -5.356 0.920 0.199 H1 0Y2 38 0Y2 H2 H2 H 0 1 N N N 99.554 -14.939 53.874 -7.675 0.908 0.934 H2 0Y2 39 0Y2 H3 H3 H 0 1 N N N 97.328 -15.991 54.132 -9.071 -1.097 0.636 H3 0Y2 40 0Y2 H4 H4 H 0 1 N N N 95.514 -14.818 55.320 -8.136 -3.109 -0.407 H4 0Y2 41 0Y2 H5 H5 H 0 1 N N N 96.931 -9.828 57.295 -2.870 -2.828 -1.965 H5 0Y2 42 0Y2 H6 H6 H 0 1 N N N 100.240 -11.112 55.836 -2.243 -0.425 -1.763 H6 0Y2 43 0Y2 H7 H7 H 0 1 N N N 99.330 -9.643 55.347 -3.444 0.729 -1.134 H7 0Y2 44 0Y2 H8 H8 H 0 1 N N N 99.878 -8.577 57.184 -3.040 -0.104 1.166 H8 0Y2 45 0Y2 H9 H9 H 0 1 N N N 99.387 -9.953 58.230 -1.839 -1.258 0.538 H9 0Y2 46 0Y2 H11 H11 H 0 1 N N N 103.236 -8.858 57.428 -2.642 2.119 -0.379 H11 0Y2 47 0Y2 H12 H12 H 0 1 N N N 102.104 -8.140 58.625 -2.307 2.342 1.355 H12 0Y2 48 0Y2 H13 H13 H 0 1 N N N 100.858 -7.895 56.104 0.018 3.067 0.779 H13 0Y2 49 0Y2 H14 H14 H 0 1 N N N 102.585 -7.467 55.860 -0.391 2.924 -0.948 H14 0Y2 50 0Y2 H15 H15 H 0 1 N N N 101.541 -5.469 56.200 -1.880 4.701 1.035 H15 0Y2 51 0Y2 H16 H16 H 0 1 N N N 98.763 -6.406 58.908 1.105 6.631 0.754 H16 0Y2 52 0Y2 H17 H17 H 0 1 N N N 102.218 -4.765 58.314 -2.847 5.556 -0.967 H17 0Y2 53 0Y2 H18 H18 H 0 1 N N N 102.423 -6.305 58.817 -1.959 4.508 -1.906 H18 0Y2 54 0Y2 H20 H20 H 0 1 N N N 102.089 -9.660 59.688 0.123 1.530 1.819 H20 0Y2 55 0Y2 H21 H21 H 0 1 N N N 100.385 -10.196 59.496 -1.067 0.397 2.504 H21 0Y2 56 0Y2 H22 H22 H 0 1 N N N 102.473 -12.104 58.715 0.011 -1.462 1.191 H22 0Y2 57 0Y2 H23 H23 H 0 1 N N N 99.718 -12.092 59.299 1.461 0.167 3.286 H23 0Y2 58 0Y2 H24 H24 H 0 1 N N N 100.092 -14.347 59.071 1.386 -1.992 4.307 H24 0Y2 59 0Y2 H25 H25 H 0 1 N N N 99.886 -12.160 61.575 3.547 -0.390 2.466 H25 0Y2 60 0Y2 H26 H26 H 0 1 N N N 99.929 -14.386 62.089 3.253 -2.521 3.553 H26 0Y2 61 0Y2 H27 H27 H 0 1 N N N 102.487 -13.643 61.243 2.404 -2.100 0.248 H27 0Y2 62 0Y2 H28 H28 H 0 1 N N N 100.514 -11.641 63.822 3.379 1.558 -0.136 H28 0Y2 63 0Y2 H29 H29 H 0 1 N N N 106.603 -14.161 63.511 6.672 -4.016 -0.825 H29 0Y2 64 0Y2 H30 H30 H 0 1 N N N 105.327 -12.741 67.600 7.751 0.988 -2.113 H30 0Y2 65 0Y2 H31 H31 H 0 1 N N N 104.320 -11.503 67.252 8.788 -0.300 -2.409 H31 0Y2 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0Y2 CBH CBI DOUB Y N 1 0Y2 CBH CBG SING Y N 2 0Y2 CBI CBJ SING Y N 3 0Y2 CBG CBC DOUB Y N 4 0Y2 CBJ CBD DOUB Y N 5 0Y2 CBC CBD SING Y N 6 0Y2 CBC CBB SING Y N 7 0Y2 CBD S1E SING Y N 8 0Y2 CBA CBB SING N N 9 0Y2 CBA CAZ SING N N 10 0Y2 CBB CBF DOUB Y N 11 0Y2 CB CA SING N N 12 0Y2 CB CAS SING N N 13 0Y2 S1E CBF SING Y N 14 0Y2 CA C SING N N 15 0Y2 CA N SING N N 16 0Y2 OXT C DOUB N N 17 0Y2 CAZ NAR SING N N 18 0Y2 CAS NAR SING N N 19 0Y2 C O SING N N 20 0Y2 NAR CAF SING N N 21 0Y2 OAH CAB SING N N 22 0Y2 CAF CAA SING N N 23 0Y2 CAA CAB SING N N 24 0Y2 CAA OAE SING N N 25 0Y2 CAB CAC SING N N 26 0Y2 OAE CAD SING N N 27 0Y2 CAC OAI SING N N 28 0Y2 CAC CAD SING N N 29 0Y2 CAD N9 SING N N 30 0Y2 N9 C4 SING Y N 31 0Y2 N9 C8 SING Y N 32 0Y2 N3 C4 DOUB Y N 33 0Y2 N3 C2 SING Y N 34 0Y2 C4 C5 SING Y N 35 0Y2 C2 N1 DOUB Y N 36 0Y2 C8 N7 DOUB Y N 37 0Y2 C5 N7 SING Y N 38 0Y2 C5 C6 DOUB Y N 39 0Y2 N1 C6 SING Y N 40 0Y2 C6 N6 SING N N 41 0Y2 CBG H1 SING N N 42 0Y2 CBH H2 SING N N 43 0Y2 CBI H3 SING N N 44 0Y2 CBJ H4 SING N N 45 0Y2 CBF H5 SING N N 46 0Y2 CBA H6 SING N N 47 0Y2 CBA H7 SING N N 48 0Y2 CAZ H8 SING N N 49 0Y2 CAZ H9 SING N N 50 0Y2 CAS H11 SING N N 51 0Y2 CAS H12 SING N N 52 0Y2 CB H13 SING N N 53 0Y2 CB H14 SING N N 54 0Y2 CA H15 SING N N 55 0Y2 O H16 SING N N 56 0Y2 N H17 SING N N 57 0Y2 N H18 SING N N 58 0Y2 CAF H20 SING N N 59 0Y2 CAF H21 SING N N 60 0Y2 CAA H22 SING N N 61 0Y2 CAB H23 SING N N 62 0Y2 OAH H24 SING N N 63 0Y2 CAC H25 SING N N 64 0Y2 OAI H26 SING N N 65 0Y2 CAD H27 SING N N 66 0Y2 C8 H28 SING N N 67 0Y2 C2 H29 SING N N 68 0Y2 N6 H30 SING N N 69 0Y2 N6 H31 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0Y2 SMILES ACDLabs 12.01 "O=C(O)C(N)CCN(CC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)CCc4c5ccccc5sc4" 0Y2 InChI InChI 1.03 "InChI=1S/C24H29N7O5S/c25-15(24(34)35)6-8-30(7-5-13-10-37-17-4-2-1-3-14(13)17)9-16-19(32)20(33)23(36-16)31-12-29-18-21(26)27-11-28-22(18)31/h1-4,10-12,15-16,19-20,23,32-33H,5-9,25H2,(H,34,35)(H2,26,27,28)/t15-,16+,19+,20+,23+/m0/s1" 0Y2 InChIKey InChI 1.03 FSMQALLDUCWVDV-PISIQOCNSA-N 0Y2 SMILES_CANONICAL CACTVS 3.370 "N[C@@H](CCN(CCc1csc2ccccc12)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C(O)=O" 0Y2 SMILES CACTVS 3.370 "N[CH](CCN(CCc1csc2ccccc12)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C(O)=O" 0Y2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)c(cs2)CCN(CC[C@@H](C(=O)O)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" 0Y2 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)c(cs2)CCN(CCC(C(=O)O)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0Y2 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-{[(3S)-3-amino-3-carboxypropyl][2-(1-benzothiophen-3-yl)ethyl]amino}-5'-deoxyadenosine" 0Y2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[2-(1-benzothiophen-3-yl)ethyl]amino]-2-azanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0Y2 "Create component" 2012-09-07 RCSB 0Y2 "Initial release" 2014-02-26 RCSB #