data_0YT # _chem_comp.id 0YT _chem_comp.name 2-acetamido-2-deoxy-5-thio-beta-D-glucopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H15 N O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2-(acetylamino)-2-deoxy-5-thio-beta-D-glucopyranose; 2-acetamido-2-deoxy-5-thio-beta-D-glucose; 2-acetamido-2-deoxy-5-thio-D-glucose; 2-acetamido-2-deoxy-5-thio-glucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-09-18 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 237.273 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0YT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GZ3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 0YT "2-(acetylamino)-2-deoxy-5-thio-beta-D-glucopyranose" PDB ? 2 0YT 2-acetamido-2-deoxy-5-thio-beta-D-glucose PDB ? 3 0YT 2-acetamido-2-deoxy-5-thio-D-glucose PDB ? 4 0YT 2-acetamido-2-deoxy-5-thio-glucose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0YT C1 C1 C 0 1 N N R N N N -21.524 27.165 6.038 -0.524 1.120 0.731 C1 0YT 1 0YT C2 C2 C 0 1 N N R N N N -22.882 27.781 5.693 -0.840 -0.199 0.021 C2 0YT 2 0YT N2 N2 N 0 1 N N N N N N -22.966 29.175 6.100 -2.205 -0.614 0.353 N2 0YT 3 0YT C7 C7 C 0 1 N N N N N N -23.201 30.214 5.216 -3.247 -0.132 -0.353 C7 0YT 4 0YT O7 O7 O 0 1 N N N N N N -23.315 30.030 4.050 -3.055 0.645 -1.264 O7 0YT 5 0YT C8 C8 C 0 1 N N N N N N -23.287 31.628 5.807 -4.652 -0.560 -0.012 C8 0YT 6 0YT C3 C3 C 0 1 N N R N N N -24.070 26.944 6.230 0.140 -1.279 0.467 C3 0YT 7 0YT O3 O3 O 0 1 N N N N N N -25.295 27.520 5.768 -0.316 -2.551 0.002 O3 0YT 8 0YT C4 C4 C 0 1 N N S N N N -24.009 25.421 5.924 1.533 -1.009 -0.095 C4 0YT 9 0YT O4 O4 O 0 1 N N N N N N -25.162 24.841 6.397 2.362 -2.152 0.123 O4 0YT 10 0YT C5 C5 C 0 1 N N R N N N -22.816 24.728 6.563 2.151 0.207 0.600 C5 0YT 11 0YT C6 C6 C 0 1 N N N N N N -22.793 23.218 6.341 3.574 0.425 0.082 C6 0YT 12 0YT O6 O6 O 0 1 N N N N N N -23.147 22.770 5.091 3.551 0.535 -1.342 O6 0YT 13 0YT S5 S5 S 0 1 N N N N N N -21.368 25.378 5.804 1.136 1.672 0.238 S5 0YT 14 0YT H3 H3 H 0 1 N N N N N N -22.963 27.757 4.596 -0.757 -0.059 -1.057 H3 0YT 15 0YT H4 H4 H 0 1 N N N N N N -22.848 29.394 7.069 -2.359 -1.237 1.081 H4 0YT 16 0YT H5 H5 H 0 1 N N N N N N -23.459 32.354 4.999 -4.626 -1.256 0.827 H5 0YT 17 0YT H6 H6 H 0 1 N N N N N N -24.119 31.675 6.525 -5.242 0.315 0.260 H6 0YT 18 0YT H7 H7 H 0 1 N N N N N N -22.345 31.868 6.321 -5.103 -1.049 -0.875 H7 0YT 19 0YT H8 H8 H 0 1 N N N N N N -24.046 27.040 7.326 0.190 -1.292 1.556 H8 0YT 20 0YT H9 H9 H 0 1 N N N N N N -26.028 27.011 6.094 0.258 -3.289 0.247 H9 0YT 21 0YT H10 H10 H 0 1 N N N N N N -23.938 25.297 4.833 1.460 -0.814 -1.165 H10 0YT 22 0YT H11 H11 H 0 1 N N N N N N -25.144 23.908 6.219 3.265 -2.053 -0.210 H11 0YT 23 0YT H12 H12 H 0 1 N N N N N N -22.763 24.960 7.637 2.175 0.039 1.676 H12 0YT 24 0YT H13 H13 H 0 1 N N N N N N -21.770 22.868 6.543 3.980 1.341 0.511 H13 0YT 25 0YT H14 H14 H 0 1 N N N N N N -23.485 22.765 7.065 4.199 -0.420 0.371 H14 0YT 26 0YT H15 H15 H 0 1 N N N N N N -23.097 21.822 5.068 4.422 0.675 -1.740 H15 0YT 27 0YT O1 O1 O 0 1 N Y N N N N -20.660 27.822 5.107 -1.487 2.108 0.358 O1 0YT 28 0YT H1 H1 H 0 1 N Y N N N N -21.253 27.384 7.081 -0.554 0.970 1.810 H1 0YT 29 0YT H2 H2 H 0 1 N N N N N N -19.770 27.514 5.228 -1.344 2.971 0.769 H2 0YT 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0YT C2 C1 SING N N 1 0YT C2 N2 SING N N 2 0YT C2 C3 SING N N 3 0YT C2 H3 SING N N 4 0YT N2 H4 SING N N 5 0YT C7 C8 SING N N 6 0YT C7 N2 SING N N 7 0YT O7 C7 DOUB N N 8 0YT C8 H5 SING N N 9 0YT C8 H6 SING N N 10 0YT C8 H7 SING N N 11 0YT C3 H8 SING N N 12 0YT O3 C3 SING N N 13 0YT O3 H9 SING N N 14 0YT C4 C3 SING N N 15 0YT C4 O4 SING N N 16 0YT C4 C5 SING N N 17 0YT C4 H10 SING N N 18 0YT O4 H11 SING N N 19 0YT C5 H12 SING N N 20 0YT C6 C5 SING N N 21 0YT C6 H13 SING N N 22 0YT C6 H14 SING N N 23 0YT O6 C6 SING N N 24 0YT O6 H15 SING N N 25 0YT S5 C1 SING N N 26 0YT S5 C5 SING N N 27 0YT C1 O1 SING N N 28 0YT C1 H1 SING N N 29 0YT O1 H2 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0YT SMILES ACDLabs 12.01 "O=C(NC1C(O)C(O)C(SC1O)CO)C" 0YT InChI InChI 1.03 "InChI=1S/C8H15NO5S/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8-/m1/s1" 0YT InChIKey InChI 1.03 DYCCLPFFILCZGU-FMDGEEDCSA-N 0YT SMILES_CANONICAL CACTVS 3.370 "CC(=O)N[C@H]1[C@H](O)S[C@H](CO)[C@@H](O)[C@@H]1O" 0YT SMILES CACTVS 3.370 "CC(=O)N[CH]1[CH](O)S[CH](CO)[CH](O)[CH]1O" 0YT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)NC1C(C(C(SC1O)CO)O)O" 0YT SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)NC1C(C(C(SC1O)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0YT "SYSTEMATIC NAME" ACDLabs 12.01 "2-(acetylamino)-2-deoxy-5-thio-beta-D-glucopyranose" 0YT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[6-(hydroxymethyl)-2,4,5-tris(oxidanyl)thian-3-yl]ethanamide" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 0YT "CARBOHYDRATE ISOMER" D PDB ? 0YT "CARBOHYDRATE RING" thiopyranose PDB ? 0YT "CARBOHYDRATE ANOMER" beta PDB ? 0YT "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0YT "Create component" 2012-09-18 RCSB 0YT "Initial release" 2012-10-26 RCSB 0YT "Other modification" 2020-07-03 RCSB 0YT "Modify name" 2020-07-17 RCSB 0YT "Modify synonyms" 2020-07-17 RCSB 0YT "Modify linking type" 2020-07-17 RCSB 0YT "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 0YT _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #