data_0Z6
#
_chem_comp.id 0Z6
_chem_comp.name "D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H36 Cl N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms FFRCK
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2008-07-30
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 504.045
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0Z6
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1DAN
_chem_comp.pdbx_subcomponent_list "DPN PHE AR7 0QE"
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0Z6 N N N 0 1 N N N N N N 34.692 5.147 11.886 4.087 2.161 1.611 N DPN 1
0Z6 CA CA C 0 1 N N R N N N 34.648 5.692 10.509 3.523 0.870 1.196 CA DPN 2
0Z6 C C C 0 1 N N N N N N 33.882 7.017 10.467 2.211 1.098 0.489 C DPN 3
0Z6 O O O 0 1 N N N N N N 33.561 7.596 11.514 1.956 2.188 0.023 O DPN 4
0Z6 CB CB C 0 1 N N N N N N 36.067 5.886 9.998 4.497 0.168 0.249 CB DPN 5
0Z6 CG CG C 0 1 Y N N N N N 36.930 6.703 10.909 5.764 -0.171 0.992 CG DPN 6
0Z6 CD1 CD1 C 0 1 Y N N N N N 37.767 6.083 11.827 5.881 -1.386 1.640 CD1 DPN 7
0Z6 CD2 CD2 C 0 1 Y N N N N N 36.921 8.095 10.838 6.811 0.731 1.020 CD2 DPN 8
0Z6 CE1 CE1 C 0 1 Y N N N N N 38.584 6.833 12.661 7.043 -1.697 2.322 CE1 DPN 9
0Z6 CE2 CE2 C 0 1 Y N N N N N 37.732 8.857 11.666 7.973 0.421 1.701 CE2 DPN 10
0Z6 CZ CZ C 0 1 Y N N N N N 38.566 8.224 12.578 8.088 -0.792 2.354 CZ DPN 11
0Z6 N1 N1 N 0 1 N N N N N N 33.600 7.485 9.254 1.323 0.091 0.375 N PHE 12
0Z6 CA1 CA1 C 0 1 N N S N N N 32.844 8.711 9.042 0.048 0.314 -0.312 CA PHE 13
0Z6 C1 C1 C 0 1 N N N N N N 31.413 8.250 8.996 -0.974 -0.670 0.195 C PHE 14
0Z6 O1 O1 O 0 1 N N N N N N 31.113 7.220 8.400 -0.668 -1.478 1.046 O PHE 15
0Z6 CB1 CB1 C 0 1 N N N N N N 33.233 9.375 7.713 0.240 0.120 -1.818 CB PHE 16
0Z6 CG1 CG1 C 0 1 Y N N N N N 34.615 9.926 7.714 1.169 1.182 -2.347 CG PHE 17
0Z6 CD11 CD11 C 0 0 Y N N N N N 34.867 11.185 8.251 2.532 0.955 -2.378 CD1 PHE 18
0Z6 CD21 CD21 C 0 0 Y N N N N N 35.680 9.176 7.221 0.657 2.381 -2.806 CD2 PHE 19
0Z6 CE11 CE11 C 0 0 Y N N N N N 36.157 11.688 8.302 3.384 1.929 -2.863 CE1 PHE 20
0Z6 CE21 CE21 C 0 0 Y N N N N N 36.979 9.675 7.269 1.509 3.356 -3.291 CE2 PHE 21
0Z6 CZ1 CZ1 C 0 1 Y N N N N N 37.217 10.933 7.811 2.873 3.131 -3.318 CZ PHE 22
0Z6 N2 N2 N 0 1 N N N N N N 30.528 9.006 9.623 -2.228 -0.653 -0.298 N AR7 23
0Z6 CA2 CA2 C 0 1 N N S N N N 29.135 8.626 9.660 -3.222 -1.610 0.195 CA AR7 24
0Z6 C2 C2 C 0 1 N N S N N N 28.218 9.452 8.763 -3.093 -2.923 -0.579 C AR7 25
0Z6 O2 O2 O 0 1 N N N N N N 27.243 8.710 8.547 -4.063 -3.857 -0.098 O AR7 26
0Z6 CB2 CB2 C 0 1 N N N N N N 28.659 8.661 11.118 -4.626 -1.036 -0.006 CB AR7 27
0Z6 CG2 CG2 C 0 1 N N N N N N 29.501 7.781 12.032 -4.797 0.211 0.866 CG AR7 28
0Z6 CD CD C 0 1 N N N N N N 29.146 7.983 13.497 -6.201 0.785 0.665 CD AR7 29
0Z6 NE NE N 0 1 N N N N N N 29.879 7.023 14.315 -6.364 1.978 1.499 NE AR7 30
0Z6 CZ2 CZ2 C 0 1 N N N N N N 29.800 6.927 15.640 -7.547 2.665 1.486 CZ AR7 31
0Z6 NH1 NH1 N 0 1 N N N N N N 29.017 7.740 16.333 -8.549 2.250 0.714 NH1 AR7 32
0Z6 NH2 NH2 N 1 1 N N N N N N 30.512 6.002 16.269 -7.695 3.750 2.244 NH2 AR7 33
0Z6 C3 C3 C 0 1 N N N N N N 28.758 9.912 7.358 -1.689 -3.498 -0.378 C1 0QE 34
0Z6 CL CL CL 0 0 N Y N N N N 29.722 11.051 7.338 -1.488 -4.966 -1.405 CL 0QE 35
0Z6 H H H 0 1 N N N N N N 35.196 4.284 11.887 4.934 2.031 2.144 H DPN 36
0Z6 H2 H2 H 0 1 N N N N N N 35.149 5.801 12.489 4.249 2.758 0.814 H2 DPN 37
0Z6 HA HA H 0 1 N N N N N N 34.119 4.977 9.862 3.358 0.246 2.075 HA DPN 38
0Z6 HB2 HB2 H 0 1 N N N N N N 36.529 4.894 9.889 4.042 -0.748 -0.129 HB2 DPN 39
0Z6 HB3 HB3 H 0 1 N N N N N N 36.013 6.401 9.027 4.731 0.828 -0.586 HB3 DPN 40
0Z6 HD1 HD1 H 0 1 N N N N N N 37.782 5.005 11.893 5.065 -2.092 1.615 HD1 DPN 41
0Z6 HD2 HD2 H 0 1 N N N N N N 36.273 8.587 10.128 6.721 1.679 0.509 HD2 DPN 42
0Z6 HE1 HE1 H 0 1 N N N N N N 39.231 6.341 13.372 7.134 -2.646 2.829 HE1 DPN 43
0Z6 HE2 HE2 H 0 1 N N N N N N 37.715 9.935 11.602 8.791 1.125 1.723 HE2 DPN 44
0Z6 HZ HZ H 0 1 N N N N N N 39.202 8.811 13.224 8.996 -1.035 2.887 HZ DPN 45
0Z6 H1 H1 H 0 1 N N N N N N 33.920 6.974 8.456 1.527 -0.780 0.748 H PHE 46
0Z6 HA1 HA1 H 0 1 N N N N N N 33.031 9.459 9.826 -0.297 1.329 -0.118 HA PHE 47
0Z6 HB21 HB21 H 0 0 N N N N N N 33.165 8.618 6.917 0.669 -0.864 -2.005 HB2 PHE 48
0Z6 HB31 HB31 H 0 0 N N N N N N 32.533 10.202 7.524 -0.724 0.197 -2.320 HB3 PHE 49
0Z6 HD11 HD11 H 0 0 N N N N N N 34.048 11.777 8.632 2.932 0.016 -2.023 HD1 PHE 50
0Z6 HD21 HD21 H 0 0 N N N N N N 35.497 8.199 6.798 -0.408 2.557 -2.786 HD2 PHE 51
0Z6 HE11 HE11 H 0 0 N N N N N N 36.339 12.666 8.723 4.449 1.752 -2.887 HE1 PHE 52
0Z6 HE21 HE21 H 0 0 N N N N N N 37.800 9.086 6.886 1.110 4.292 -3.651 HE2 PHE 53
0Z6 HZ1 HZ1 H 0 1 N N N N N N 38.223 11.323 7.851 3.539 3.892 -3.696 HZ PHE 54
0Z6 H3 H3 H 0 1 N N N N N N 30.825 9.847 10.075 -2.473 -0.007 -0.979 H AR7 55
0Z6 HA2 HA2 H 0 1 N N N N N N 29.070 7.609 9.246 -3.054 -1.795 1.256 HA AR7 56
0Z6 HB22 HB22 H 0 0 N N N N N N 28.722 9.698 11.479 -4.763 -0.768 -1.053 HB2 AR7 57
0Z6 HB32 HB32 H 0 0 N N N N N N 27.619 8.304 11.153 -5.368 -1.782 0.278 HB3 AR7 58
0Z6 HG2 HG2 H 0 1 N N N N N N 29.324 6.728 11.768 -4.660 -0.057 1.913 HG2 AR7 59
0Z6 HG3 HG3 H 0 1 N N N N N N 30.561 8.036 11.888 -4.055 0.957 0.582 HG3 AR7 60
0Z6 HD22 HD22 H 0 0 N N N N N N 29.416 9.005 13.801 -6.337 1.053 -0.383 HD2 AR7 61
0Z6 HD3 HD3 H 0 1 N N N N N N 28.065 7.832 13.636 -6.943 0.038 0.949 HD3 AR7 62
0Z6 HE HE H 0 1 N N N N N N 30.489 6.387 13.843 -5.634 2.280 2.062 HE AR7 63
0Z6 HH11 HH11 H 0 0 N N N N N N 28.964 7.655 17.328 -8.441 1.460 0.161 HH11 AR7 64
0Z6 HH12 HH12 H 0 0 N N N N N N 28.479 8.439 15.861 -9.388 2.738 0.704 HH12 AR7 65
0Z6 HH21 HH21 H 0 0 N N N N N N 30.457 5.920 17.264 -8.533 4.238 2.234 HH21 AR7 66
0Z6 HH22 HH22 H 0 0 N N N N N N 31.104 5.387 15.748 -6.965 4.052 2.806 HH22 AR7 67
0Z6 H11 H11 H 0 1 N N N N N N 29.273 9.048 6.913 -0.948 -2.751 -0.662 H 0QE 68
0Z6 H21 H21 H 0 1 N N N N N N 27.885 10.219 6.763 -1.553 -3.766 0.669 HA 0QE 69
0Z6 H35 H35 H 0 1 N N N N N N 28.039 10.397 9.297 -3.262 -2.738 -1.640 HF AR7 70
0Z6 H36 H36 H 0 1 N N N N N N 26.620 9.160 7.988 -3.973 -4.069 0.841 H1 AR7 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0Z6 N CA SING N N 1
0Z6 N H SING N N 2
0Z6 N H2 SING N N 3
0Z6 CA C SING N N 4
0Z6 CA CB SING N N 5
0Z6 CA HA SING N N 6
0Z6 C O DOUB N N 7
0Z6 C N1 SING N N 8
0Z6 CB CG SING N N 9
0Z6 CB HB2 SING N N 10
0Z6 CB HB3 SING N N 11
0Z6 CG CD1 DOUB Y N 12
0Z6 CG CD2 SING Y N 13
0Z6 CD1 CE1 SING Y N 14
0Z6 CD1 HD1 SING N N 15
0Z6 CD2 CE2 DOUB Y N 16
0Z6 CD2 HD2 SING N N 17
0Z6 CE1 CZ DOUB Y N 18
0Z6 CE1 HE1 SING N N 19
0Z6 CE2 CZ SING Y N 20
0Z6 CE2 HE2 SING N N 21
0Z6 CZ HZ SING N N 22
0Z6 N1 CA1 SING N N 23
0Z6 N1 H1 SING N N 24
0Z6 CA1 C1 SING N N 25
0Z6 CA1 CB1 SING N N 26
0Z6 CA1 HA1 SING N N 27
0Z6 C1 O1 DOUB N N 28
0Z6 C1 N2 SING N N 29
0Z6 CB1 CG1 SING N N 30
0Z6 CB1 HB21 SING N N 31
0Z6 CB1 HB31 SING N N 32
0Z6 CG1 CD11 DOUB Y N 33
0Z6 CG1 CD21 SING Y N 34
0Z6 CD11 CE11 SING Y N 35
0Z6 CD11 HD11 SING N N 36
0Z6 CD21 CE21 DOUB Y N 37
0Z6 CD21 HD21 SING N N 38
0Z6 CE11 CZ1 DOUB Y N 39
0Z6 CE11 HE11 SING N N 40
0Z6 CE21 CZ1 SING Y N 41
0Z6 CE21 HE21 SING N N 42
0Z6 CZ1 HZ1 SING N N 43
0Z6 N2 CA2 SING N N 44
0Z6 N2 H3 SING N N 45
0Z6 CA2 C2 SING N N 46
0Z6 CA2 CB2 SING N N 47
0Z6 CA2 HA2 SING N N 48
0Z6 C2 O2 SING N N 49
0Z6 C2 C3 SING N N 50
0Z6 CB2 CG2 SING N N 51
0Z6 CB2 HB22 SING N N 52
0Z6 CB2 HB32 SING N N 53
0Z6 CG2 CD SING N N 54
0Z6 CG2 HG2 SING N N 55
0Z6 CG2 HG3 SING N N 56
0Z6 CD NE SING N N 57
0Z6 CD HD22 SING N N 58
0Z6 CD HD3 SING N N 59
0Z6 NE CZ2 SING N N 60
0Z6 NE HE SING N N 61
0Z6 CZ2 NH1 SING N N 62
0Z6 CZ2 NH2 DOUB N N 63
0Z6 NH1 HH11 SING N N 64
0Z6 NH1 HH12 SING N N 65
0Z6 NH2 HH21 SING N N 66
0Z6 NH2 HH22 SING N N 67
0Z6 C3 H11 SING N N 68
0Z6 C3 H21 SING N N 69
0Z6 C3 CL SING N N 70
0Z6 C2 H35 SING N N 71
0Z6 O2 H36 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0Z6 SMILES ACDLabs 12.01 "ClCC(O)C(NC(=O)C(NC(=O)C(N)Cc1ccccc1)Cc2ccccc2)CCCNC(=[NH2+])\N"
0Z6 SMILES_CANONICAL CACTVS 3.370 "N[C@H](Cc1ccccc1)C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@@H](CCCNC(N)=[NH2+])[C@H](O)CCl"
0Z6 SMILES CACTVS 3.370 "N[CH](Cc1ccccc1)C(=O)N[CH](Cc2ccccc2)C(=O)N[CH](CCCNC(N)=[NH2+])[CH](O)CCl"
0Z6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)C[C@H](C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@@H](CCCNC(=[NH2+])N)[C@@H](CCl)O)N"
0Z6 SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CC(C(=O)NC(Cc2ccccc2)C(=O)NC(CCCNC(=[NH2+])N)C(CCl)O)N"
0Z6 InChI InChI 1.03 "InChI=1S/C25H35ClN6O3/c26-16-22(33)20(12-7-13-30-25(28)29)31-24(35)21(15-18-10-5-2-6-11-18)32-23(34)19(27)14-17-8-3-1-4-9-17/h1-6,8-11,19-22,33H,7,12-16,27H2,(H,31,35)(H,32,34)(H4,28,29,30)/p+1/t19-,20+,21+,22-/m1/s1"
0Z6 InChIKey InChI 1.03 ZKHBINZTIMXMQW-CLAROIROSA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0Z6 "SYSTEMATIC NAME" ACDLabs 12.01 "D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide"
0Z6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[[(4S,5S)-4-[[(2S)-2-[[(2R)-2-azanyl-3-phenyl-propanoyl]amino]-3-phenyl-propanoyl]amino]-6-chloro-5-hydroxy-hexyl]amino]methylidene]azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0Z6 "Other modification" 2008-07-30 RCSB
0Z6 "Other modification" 2011-01-11 RCSB
0Z6 "Modify synonyms" 2011-02-04 RCSB
0Z6 "Modify descriptor" 2011-06-04 RCSB
0Z6 "Modify synonyms" 2020-06-05 PDBE
0Z6 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0Z6
_pdbx_chem_comp_synonyms.name FFRCK
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 0Z6 HIS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C3 NE2 ? ?
2 0Z6 SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" C2 OG ? ?
#