data_0ZI
#
_chem_comp.id 0ZI
_chem_comp.name "amino{[(4S)-4-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)-5-(4-ethylpiperidin-1-yl)-5-oxopentyl]amino}methaniminium"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H39 N6 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms DAPA
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2008-08-05
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 503.681
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0ZI
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FPC
_chem_comp.pdbx_subcomponent_list "ANS ARG EPI"
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0ZI C1 C1 C 0 1 Y N N 17.565 -17.093 22.355 1.447 -1.893 -1.116 C1 ANS 1
0ZI C2 C2 C 0 1 Y N N 18.364 -17.078 21.180 1.824 -1.547 -2.377 C2 ANS 2
0ZI C3 C3 C 0 1 Y N N 19.666 -16.658 21.239 3.096 -1.038 -2.632 C3 ANS 3
0ZI C4 C4 C 0 1 Y N N 20.211 -16.222 22.459 3.999 -0.874 -1.626 C4 ANS 4
0ZI C4A C5 C 0 1 Y N N 19.450 -16.230 23.624 3.646 -1.220 -0.312 C4A ANS 5
0ZI C5 C6 C 0 1 Y N N 19.974 -15.822 24.817 4.556 -1.064 0.756 C5 ANS 6
0ZI C6 C7 C 0 1 Y N N 19.200 -15.792 25.965 4.169 -1.417 2.031 C6 ANS 7
0ZI C7 C8 C 0 1 Y N N 17.874 -16.271 25.891 2.896 -1.923 2.274 C7 ANS 8
0ZI C8 C9 C 0 1 Y N N 17.314 -16.679 24.697 1.998 -2.084 1.262 C8 ANS 9
0ZI C8A C10 C 0 1 Y N N 18.084 -16.681 23.563 2.353 -1.736 -0.052 C8A ANS 10
0ZI N N1 N 0 1 N N N 21.291 -15.348 24.867 5.833 -0.558 0.523 N ANS 11
0ZI CM1 C11 C 0 1 N N N 21.671 -13.923 24.948 6.057 0.677 1.285 CM1 ANS 12
0ZI CM2 C12 C 0 1 N N N 22.273 -16.221 25.811 6.860 -1.562 0.832 CM2 ANS 13
0ZI S S1 S 0 1 N N N 15.780 -17.638 22.197 -0.169 -2.527 -0.817 S ANS 14
0ZI O1S O1 O 0 1 N N N 15.656 -18.079 20.784 -0.848 -2.501 -2.065 O1S ANS 15
0ZI O2S O2 O 0 1 N N N 15.061 -18.589 23.126 -0.000 -3.710 -0.048 O2S ANS 16
0ZI N1 N2 N 0 1 N N N 14.698 -16.245 22.319 -0.948 -1.441 0.162 N ARG 17
0ZI CA C13 C 0 1 N N S 14.787 -15.165 21.347 -1.247 -0.094 -0.331 CA ARG 18
0ZI C C14 C 0 1 N N N 15.875 -14.185 21.794 -1.118 0.894 0.799 C ARG 19
0ZI O O4 O 0 1 N N N 16.118 -13.927 22.987 -1.154 0.509 1.949 O ARG 20
0ZI CB C15 C 0 1 N N N 13.454 -14.456 21.273 -2.675 -0.057 -0.880 CB ARG 21
0ZI CG C16 C 0 1 N N N 11.919 -14.521 21.303 -3.665 -0.315 0.257 CG ARG 22
0ZI CD C17 C 0 1 N N N 11.441 -13.189 21.200 -5.083 -0.404 -0.312 CD ARG 23
0ZI NE N3 N 0 1 N N N 10.980 -12.774 22.558 -6.032 -0.651 0.777 NE ARG 24
0ZI CZ C18 C 0 1 N N N 11.173 -11.729 23.313 -7.367 -0.769 0.507 CZ ARG 25
0ZI NH1 N4 N 0 1 N N N 11.899 -10.700 22.790 -7.806 -0.659 -0.747 NH1 ARG 26
0ZI NH2 N5 N 1 1 N N N 10.682 -11.701 24.491 -8.230 -0.993 1.496 NH2 ARG 27
0ZI N11 N6 N 0 1 N N N 16.887 -13.881 20.812 -0.962 2.206 0.533 N1 EPI 28
0ZI C21 C19 C 0 1 N N N 17.872 -12.809 21.366 -0.723 3.167 1.618 C2 EPI 29
0ZI C31 C20 C 0 1 N N N 19.177 -12.864 20.586 0.541 3.970 1.295 C3 EPI 30
0ZI C41 C21 C 0 1 N N N 18.865 -12.924 19.008 0.397 4.608 -0.088 C4 EPI 31
0ZI C51 C22 C 0 1 N N N 17.798 -14.064 18.539 0.239 3.510 -1.143 C5 EPI 32
0ZI C61 C23 C 0 1 N N N 16.460 -13.948 19.307 -1.023 2.701 -0.849 C6 EPI 33
0ZI "C1'" C24 C 0 1 N N N 20.177 -13.170 18.484 1.643 5.439 -0.399 "C1'" EPI 34
0ZI "C2'" C25 C 0 1 N N N 20.319 -13.036 16.939 1.447 6.175 -1.726 "C2'" EPI 35
0ZI H2 H1 H 0 1 N N N 17.943 -17.399 20.238 1.126 -1.668 -3.193 H2 ANS 36
0ZI H3 H2 H 0 1 N N N 20.275 -16.662 20.347 3.370 -0.771 -3.642 H3 ANS 37
0ZI H4 H3 H 0 1 N N N 21.234 -15.876 22.493 4.982 -0.479 -1.838 H4 ANS 38
0ZI H6 H4 H 0 1 N N N 19.601 -15.412 26.893 4.862 -1.299 2.851 H6 ANS 39
0ZI H7 H5 H 0 1 N N N 17.282 -16.320 26.793 2.615 -2.194 3.281 H7 ANS 40
0ZI H8 H6 H 0 1 N N N 16.281 -16.993 24.657 1.015 -2.479 1.470 H8 ANS 41
0ZI HM11 H7 H 0 0 N N N 21.765 -13.628 26.003 5.951 0.471 2.350 HM11 ANS 42
0ZI HM12 H8 H 0 0 N N N 22.633 -13.771 24.437 7.062 1.050 1.085 HM12 ANS 43
0ZI HM13 H9 H 0 0 N N N 20.897 -13.309 24.464 5.325 1.427 0.985 HM13 ANS 44
0ZI HM21 H10 H 0 0 N N N 23.214 -16.419 25.278 6.712 -2.440 0.204 HM21 ANS 45
0ZI HM22 H11 H 0 0 N N N 22.485 -15.663 26.735 7.848 -1.141 0.642 HM22 ANS 46
0ZI HM23 H12 H 0 0 N N N 21.787 -17.175 26.063 6.784 -1.849 1.881 HM23 ANS 47
0ZI H H14 H 0 1 N N N 14.879 -15.831 23.211 -1.207 -1.697 1.061 H ARG 48
0ZI HA H16 H 0 1 N N N 15.040 -15.565 20.354 -0.546 0.167 -1.124 HA ARG 49
0ZI HB2 H17 H 0 1 N N N 13.592 -13.788 22.136 -2.871 0.922 -1.317 HB2 ARG 50
0ZI HB3 H18 H 0 1 N N N 13.443 -14.580 20.180 -2.790 -0.826 -1.644 HB3 ARG 51
0ZI HG2 H19 H 0 1 N N N 11.547 -15.125 20.462 -3.414 -1.253 0.753 HG2 ARG 52
0ZI HG3 H20 H 0 1 N N N 11.567 -14.990 22.233 -3.614 0.502 0.976 HG3 ARG 53
0ZI HD2 H21 H 0 1 N N N 12.245 -12.523 20.852 -5.335 0.533 -0.808 HD2 ARG 54
0ZI HD3 H22 H 0 1 N N N 10.616 -13.128 20.475 -5.135 -1.221 -1.031 HD3 ARG 55
0ZI HE H23 H 0 1 N N N 10.386 -13.455 22.987 -5.713 -0.731 1.689 HE ARG 56
0ZI HH11 H24 H 0 0 N N N 11.979 -9.961 23.459 -7.177 -0.496 -1.467 HH11 ARG 57
0ZI HH12 H25 H 0 0 N N N 12.294 -10.687 21.872 -8.753 -0.743 -0.938 HH12 ARG 58
0ZI HH21 H26 H 0 0 N N N 10.186 -12.549 24.677 -9.177 -1.077 1.305 HH21 ARG 59
0ZI HH22 H27 H 0 0 N N N 10.779 -10.942 25.134 -7.911 -1.073 2.409 HH22 ARG 60
0ZI H21 H30 H 0 1 N N N 17.424 -11.810 21.259 -1.574 3.843 1.702 H21 EPI 61
0ZI H22 H31 H 0 1 N N N 18.072 -13.011 22.429 -0.586 2.631 2.557 H22 EPI 62
0ZI H31 H32 H 0 1 N N N 19.772 -11.966 20.807 0.677 4.751 2.043 H31 EPI 63
0ZI H32 H33 H 0 1 N N N 19.739 -13.762 20.880 1.406 3.306 1.301 H32 EPI 64
0ZI H41 H34 H 0 1 N N N 18.367 -12.011 18.649 -0.482 5.252 -0.101 H4 EPI 65
0ZI H51 H35 H 0 1 N N N 17.600 -13.941 17.464 0.159 3.964 -2.131 H51 EPI 66
0ZI H52 H36 H 0 1 N N N 18.233 -15.051 18.754 1.106 2.850 -1.115 H52 EPI 67
0ZI H61 H37 H 0 1 N N N 15.812 -14.816 19.114 -1.084 1.858 -1.537 H61 EPI 68
0ZI H62 H38 H 0 1 N N N 15.874 -13.070 18.998 -1.899 3.339 -0.971 H62 EPI 69
0ZI "H1'1" H39 H 0 0 N N N 20.859 -12.439 18.943 1.805 6.163 0.398 "H1'1" EPI 70
0ZI "H1'2" H40 H 0 0 N N N 20.409 -14.219 18.722 2.509 4.781 -0.474 "H1'2" EPI 71
0ZI "H2'1" H41 H 0 0 N N N 19.320 -13.004 16.480 1.285 5.451 -2.524 "H2'1" EPI 72
0ZI "H2'2" H42 H 0 0 N N N 20.862 -12.110 16.700 0.581 6.833 -1.651 "H2'2" EPI 73
0ZI "H2'3" H43 H 0 0 N N N 20.876 -13.899 16.546 2.335 6.767 -1.947 "H2'3" EPI 74
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0ZI C1 C2 DOUB Y N 1
0ZI C1 C8A SING Y N 2
0ZI C1 S SING N N 3
0ZI C2 C3 SING Y N 4
0ZI C2 H2 SING N N 5
0ZI C3 C4 DOUB Y N 6
0ZI C3 H3 SING N N 7
0ZI C4 C4A SING Y N 8
0ZI C4 H4 SING N N 9
0ZI C4A C5 DOUB Y N 10
0ZI C4A C8A SING Y N 11
0ZI C5 C6 SING Y N 12
0ZI C5 N SING N N 13
0ZI C6 C7 DOUB Y N 14
0ZI C6 H6 SING N N 15
0ZI C7 C8 SING Y N 16
0ZI C7 H7 SING N N 17
0ZI C8 C8A DOUB Y N 18
0ZI C8 H8 SING N N 19
0ZI N CM1 SING N N 20
0ZI N CM2 SING N N 21
0ZI CM1 HM11 SING N N 22
0ZI CM1 HM12 SING N N 23
0ZI CM1 HM13 SING N N 24
0ZI CM2 HM21 SING N N 25
0ZI CM2 HM22 SING N N 26
0ZI CM2 HM23 SING N N 27
0ZI S O1S DOUB N N 28
0ZI S O2S DOUB N N 29
0ZI N1 CA SING N N 30
0ZI N1 H SING N N 31
0ZI CA C SING N N 32
0ZI CA CB SING N N 33
0ZI CA HA SING N N 34
0ZI C O DOUB N N 35
0ZI CB CG SING N N 36
0ZI CB HB2 SING N N 37
0ZI CB HB3 SING N N 38
0ZI CG CD SING N N 39
0ZI CG HG2 SING N N 40
0ZI CG HG3 SING N N 41
0ZI CD NE SING N N 42
0ZI CD HD2 SING N N 43
0ZI CD HD3 SING N N 44
0ZI NE CZ SING N N 45
0ZI NE HE SING N N 46
0ZI CZ NH1 SING N N 47
0ZI CZ NH2 DOUB N N 48
0ZI NH1 HH11 SING N N 49
0ZI NH1 HH12 SING N N 50
0ZI NH2 HH21 SING N N 51
0ZI NH2 HH22 SING N N 52
0ZI N11 C21 SING N N 53
0ZI N11 C61 SING N N 54
0ZI C21 C31 SING N N 55
0ZI C21 H21 SING N N 56
0ZI C21 H22 SING N N 57
0ZI C31 C41 SING N N 58
0ZI C31 H31 SING N N 59
0ZI C31 H32 SING N N 60
0ZI C41 C51 SING N N 61
0ZI C41 "C1'" SING N N 62
0ZI C41 H41 SING N N 63
0ZI C51 C61 SING N N 64
0ZI C51 H51 SING N N 65
0ZI C51 H52 SING N N 66
0ZI C61 H61 SING N N 67
0ZI C61 H62 SING N N 68
0ZI "C1'" "C2'" SING N N 69
0ZI "C1'" "H1'1" SING N N 70
0ZI "C1'" "H1'2" SING N N 71
0ZI "C2'" "H2'1" SING N N 72
0ZI "C2'" "H2'2" SING N N 73
0ZI "C2'" "H2'3" SING N N 74
0ZI S N1 SING N N 75
0ZI C N11 SING N N 76
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0ZI SMILES ACDLabs 10.04 "O=C(N1CCC(CC)CC1)C(NS(=O)(=O)c3c2cccc(N(C)C)c2ccc3)CCCNC(=[NH2+])\N"
0ZI SMILES_CANONICAL CACTVS 3.341 "CC[C@@H]1CCN(CC1)C(=O)[C@H](CCCNC(N)=[NH2+])N[S](=O)(=O)c2cccc3c(cccc23)N(C)C"
0ZI SMILES CACTVS 3.341 "CC[CH]1CCN(CC1)C(=O)[CH](CCCNC(N)=[NH2+])N[S](=O)(=O)c2cccc3c(cccc23)N(C)C"
0ZI InChI InChI 1.03 "InChI=1S/C25H38N6O3S/c1-4-18-13-16-31(17-14-18)24(32)21(10-7-15-28-25(26)27)29-35(33,34)23-12-6-8-19-20(23)9-5-11-22(19)30(2)3/h5-6,8-9,11-12,18,21,29H,4,7,10,13-17H2,1-3H3,(H4,26,27,28)/p+1/t21-/m0/s1"
0ZI InChIKey InChI 1.03 IIYZWOIELWZHJV-NRFANRHFSA-O
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0ZI "SYSTEMATIC NAME" ACDLabs 10.04 "amino{[(4S)-4-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)-5-(4-ethylpiperidin-1-yl)-5-oxopentyl]amino}methaniminium"
0ZI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[amino-[[(4S)-4-[(5-dimethylaminonaphthalen-1-yl)sulfonylamino]-5-(4-ethylpiperidin-1-yl)-5-oxo-pentyl]amino]methylidene]azanium"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0ZI "Create component" 2008-08-05 RCSB
0ZI "Modify descriptor" 2011-06-04 RCSB
0ZI "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0ZI
_pdbx_chem_comp_synonyms.name DAPA
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##