data_103 # _chem_comp.id 103 _chem_comp.name ;2',5'-DIDEOXY-ADENOSINE 3'-MONOPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-08-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 315.222 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 103 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CUL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 103 P P P 0 1 N N N 54.834 -9.476 53.032 -1.061 0.103 -3.461 P 103 1 103 O1P O1P O 0 1 N N N 53.853 -9.945 54.046 -0.686 1.534 -3.445 O1P 103 2 103 O2P O2P O 0 1 N N N 56.002 -8.665 53.455 -1.529 -0.312 -4.944 O2P 103 3 103 O3P O3P O 0 1 N N N 54.097 -8.724 51.986 -2.269 -0.145 -2.427 O3P 103 4 103 "C5'" C5* C 0 1 N N N 58.963 -11.266 51.999 2.185 1.556 -1.683 "C5'" 103 5 103 "C4'" C4* C 0 1 N N R 57.560 -11.603 51.583 2.061 0.032 -1.648 "C4'" 103 6 103 "O4'" O4* O 0 1 N N N 57.490 -12.970 51.095 2.598 -0.470 -0.419 "O4'" 103 7 103 "C3'" C3* C 0 1 N N S 56.496 -11.487 52.685 0.573 -0.374 -1.711 "C3'" 103 8 103 "O3'" O3* O 0 1 N N N 55.372 -10.742 52.203 0.207 -0.788 -3.028 "O3'" 103 9 103 "C2'" C2* C 0 1 N N N 56.083 -12.924 52.947 0.518 -1.570 -0.719 "C2'" 103 10 103 "C1'" C1* C 0 1 N N R 56.324 -13.588 51.602 1.567 -1.131 0.332 "C1'" 103 11 103 N9 N9 N 0 1 Y N N 56.569 -15.028 51.669 0.968 -0.205 1.295 N9 103 12 103 C8 C8 C 0 1 Y N N 57.733 -15.661 52.031 1.044 1.155 1.261 C8 103 13 103 N7 N7 N 0 1 Y N N 57.646 -16.966 52.016 0.397 1.662 2.270 N7 103 14 103 C5 C5 C 0 1 Y N N 56.338 -17.210 51.615 -0.134 0.662 3.013 C5 103 15 103 C6 C6 C 0 1 Y N N 55.620 -18.397 51.414 -0.910 0.606 4.183 C6 103 16 103 N6 N6 N 0 1 N N N 56.153 -19.611 51.577 -1.295 1.765 4.834 N6 103 17 103 N1 N1 N 0 1 Y N N 54.323 -18.297 51.026 -1.266 -0.586 4.650 N1 103 18 103 C2 C2 C 0 1 Y N N 53.808 -17.081 50.843 -0.904 -1.697 4.035 C2 103 19 103 N3 N3 N 0 1 Y N N 54.387 -15.892 50.994 -0.177 -1.692 2.937 N3 103 20 103 C4 C4 C 0 1 Y N N 55.667 -16.028 51.391 0.220 -0.547 2.394 C4 103 21 103 HOP2 2HOP H 0 0 N N N 56.628 -8.365 52.807 -2.289 0.243 -5.164 HOP2 103 22 103 HOP3 3HOP H 0 0 N N N 54.723 -8.424 51.338 -2.482 -1.088 -2.468 HOP3 103 23 103 "H5'1" 1H5* H 0 0 N N N 59.016 -10.217 52.373 3.178 1.848 -1.342 "H5'1" 103 24 103 "H5'2" 2H5* H 0 0 N N N 59.361 -11.993 52.744 2.032 1.910 -2.703 "H5'2" 103 25 103 "H5'3" 3H5* H 0 0 N N N 59.695 -11.451 51.178 1.431 1.997 -1.030 "H5'3" 103 26 103 "H4'" H4* H 0 1 N N N 57.330 -10.842 50.801 2.599 -0.401 -2.491 "H4'" 103 27 103 "H3'" H3* H 0 1 N N N 56.873 -10.967 53.596 -0.065 0.440 -1.371 "H3'" 103 28 103 "H2'1" 1H2* H 0 0 N N N 56.598 -13.409 53.808 0.816 -2.498 -1.208 "H2'1" 103 29 103 "H2'2" 2H2* H 0 0 N N N 55.051 -13.048 53.352 -0.470 -1.665 -0.272 "H2'2" 103 30 103 "H1'" H1* H 0 1 N N N 55.410 -13.466 50.974 1.974 -2.001 0.847 "H1'" 103 31 103 H8 H8 H 0 1 N N N 58.672 -15.156 52.314 1.565 1.728 0.508 H8 103 32 103 HN61 1HN6 H 0 0 N N N 55.630 -20.474 51.430 -1.831 1.712 5.641 HN61 103 33 103 HN62 2HN6 H 0 0 N N N 56.543 -19.647 52.518 -1.029 2.629 4.484 HN62 103 34 103 H2 H2 H 0 1 N N N 52.753 -17.055 50.521 -1.215 -2.645 4.449 H2 103 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 103 P O1P DOUB N N 1 103 P O2P SING N N 2 103 P O3P SING N N 3 103 P "O3'" SING N N 4 103 O2P HOP2 SING N N 5 103 O3P HOP3 SING N N 6 103 "C5'" "C4'" SING N N 7 103 "C5'" "H5'1" SING N N 8 103 "C5'" "H5'2" SING N N 9 103 "C5'" "H5'3" SING N N 10 103 "C4'" "O4'" SING N N 11 103 "C4'" "C3'" SING N N 12 103 "C4'" "H4'" SING N N 13 103 "O4'" "C1'" SING N N 14 103 "C3'" "O3'" SING N N 15 103 "C3'" "C2'" SING N N 16 103 "C3'" "H3'" SING N N 17 103 "C2'" "C1'" SING N N 18 103 "C2'" "H2'1" SING N N 19 103 "C2'" "H2'2" SING N N 20 103 "C1'" N9 SING N N 21 103 "C1'" "H1'" SING N N 22 103 N9 C8 SING Y N 23 103 N9 C4 SING Y N 24 103 C8 N7 DOUB Y N 25 103 C8 H8 SING N N 26 103 N7 C5 SING Y N 27 103 C5 C6 SING Y N 28 103 C5 C4 DOUB Y N 29 103 C6 N6 SING N N 30 103 C6 N1 DOUB Y N 31 103 N6 HN61 SING N N 32 103 N6 HN62 SING N N 33 103 N1 C2 SING Y N 34 103 C2 N3 DOUB Y N 35 103 C2 H2 SING N N 36 103 N3 C4 SING Y N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 103 SMILES ACDLabs 10.04 "O=P(O)(O)OC3C(OC(n2cnc1c(ncnc12)N)C3)C" 103 SMILES_CANONICAL CACTVS 3.341 "C[C@H]1O[C@H](C[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 103 SMILES CACTVS 3.341 "C[CH]1O[CH](C[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 103 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@H](C[C@@H](O1)n2cnc3c2ncnc3N)OP(=O)(O)O" 103 SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(CC(O1)n2cnc3c2ncnc3N)OP(=O)(O)O" 103 InChI InChI 1.03 "InChI=1S/C10H14N5O5P/c1-5-6(20-21(16,17)18)2-7(19-5)15-4-14-8-9(11)12-3-13-10(8)15/h3-7H,2H2,1H3,(H2,11,12,13)(H2,16,17,18)/t5-,6+,7-/m1/s1" 103 InChIKey InChI 1.03 NFGZMOICZSFFLB-DSYKOEDSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 103 "SYSTEMATIC NAME" ACDLabs 10.04 ;2',5'-dideoxy-3'-adenylic acid ; 103 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(6-aminopurin-9-yl)-2-methyl-oxolan-3-yl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 103 "Create component" 1999-08-17 RCSB 103 "Modify descriptor" 2011-06-04 RCSB #