data_112 # _chem_comp.id 112 _chem_comp.name "THIOPHOSPHORIC ACID O-((ADENOSYL-PHOSPHO)PHOSPHO)-S-ACETAMIDYL-DIESTER" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N6 O13 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-12-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 580.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 112 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1GAG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 112 NS NS N 0 1 N N N N N N -25.111 29.804 16.378 1.546 -0.480 10.859 NS 112 1 112 C2S C2S C 0 1 N N N N N N -25.076 29.463 15.090 1.636 0.223 9.714 C2S 112 2 112 O2S O2S O 0 1 N N N N N N -25.149 30.392 14.279 2.262 1.262 9.688 O2S 112 3 112 C1S C1S C 0 1 N N N N N N -24.949 28.023 14.594 0.957 -0.278 8.465 C1S 112 4 112 PG PG P 0 1 N N R N N N -22.837 27.815 12.434 0.202 -0.092 5.547 PG 112 5 112 S1G S1G S 0 1 N N N N N N -23.252 27.403 14.369 1.261 0.882 7.104 S1G 112 6 112 O2G O2G O 0 1 N N N N N N -22.925 29.264 12.188 0.825 -1.557 5.309 O2G 112 7 112 O3G O3G O 0 1 N N N N N N -21.569 27.195 11.995 -1.223 -0.217 5.924 O3G 112 8 112 PB PB P 0 1 N N S N N N -25.290 27.565 10.998 -0.496 -0.023 3.060 PB 112 9 112 O1B O1B O 0 1 N N N N N N -26.313 26.538 11.298 0.086 -1.371 2.879 O1B 112 10 112 O2B O2B O 0 1 N N N N N N -25.578 28.965 11.334 -2.036 -0.161 3.511 O2B 112 11 112 O3B O3B O 0 1 N N N N N N -23.887 27.202 11.502 0.325 0.770 4.193 O3B 112 12 112 PA PA P 0 1 N N S N N N -25.687 27.833 8.262 -1.254 -0.059 0.588 PA 112 13 112 O1A O1A O 0 1 N N N N N N -26.645 26.711 8.061 -0.659 -1.406 0.446 O1A 112 14 112 O2A O2A O 0 1 N N N N N N -26.171 29.242 8.328 -2.781 -0.196 1.081 O2A 112 15 112 O3A O3A O 0 1 N N N N N N -24.902 27.506 9.525 -0.415 0.786 1.671 O3A 112 16 112 "O5'" O5* O 0 1 N N N N N N -24.545 27.790 7.092 -1.215 0.697 -0.831 "O5'" 112 17 112 "C5'" C5* C 0 1 N N N N N N -23.275 27.090 7.208 -1.973 -0.098 -1.744 "C5'" 112 18 112 "C4'" C4* C 0 1 N N R N N N -22.104 27.659 6.440 -1.976 0.568 -3.121 "C4'" 112 19 112 "O4'" O4* O 0 1 N N N N N N -22.481 27.806 5.043 -0.632 0.657 -3.624 "O4'" 112 20 112 "C3'" C3* C 0 1 N N S N N N -21.652 29.054 6.848 -2.785 -0.286 -4.116 "C3'" 112 21 112 "O3'" O3* O 0 1 N N N N N N -20.753 29.024 7.955 -3.887 0.455 -4.641 "O3'" 112 22 112 "C2'" C2* C 0 1 N N R N N N -20.948 29.537 5.589 -1.769 -0.617 -5.240 "C2'" 112 23 112 "O2'" O2* O 0 1 N N N N N N -19.646 28.995 5.480 -2.385 -0.527 -6.526 "O2'" 112 24 112 "C1'" C1* C 0 1 N N R N N N -21.844 28.951 4.490 -0.706 0.495 -5.057 "C1'" 112 25 112 N9 N9 N 0 1 Y N N N N N -22.870 29.878 3.982 0.588 0.072 -5.596 N9 112 26 112 C8 C8 C 0 1 Y N N N N N -24.104 30.154 4.524 1.536 -0.653 -4.939 C8 112 27 112 N7 N7 N 0 1 Y N N N N N -24.795 31.041 3.844 2.561 -0.851 -5.716 N7 112 28 112 C5 C5 C 0 1 Y N N N N N -23.967 31.373 2.784 2.336 -0.267 -6.917 C5 112 29 112 C6 C6 C 0 1 Y N N N N N -24.121 32.266 1.703 3.065 -0.154 -8.113 C6 112 30 112 N6 N6 N 0 1 N N N N N N -25.206 33.021 1.510 4.320 -0.724 -8.234 N6 112 31 112 N1 N1 N 0 1 Y N N N N N -23.109 32.361 0.817 2.521 0.513 -9.126 N1 112 32 112 C2 C2 C 0 1 Y N N N N N -22.019 31.608 1.014 1.324 1.060 -9.020 C2 112 33 112 N3 N3 N 0 1 Y N N N N N -21.754 30.737 1.987 0.606 0.979 -7.920 N3 112 34 112 C4 C4 C 0 1 Y N N N N N -22.779 30.664 2.852 1.065 0.327 -6.857 C4 112 35 112 HNS1 1HNS H 0 0 N N N N N N -25.195 30.765 16.709 1.983 -0.157 11.663 HNS1 112 36 112 HNS2 2HNS H 0 0 N N N N N N -25.050 29.036 17.047 1.042 -1.309 10.881 HNS2 112 37 112 H1S1 1H1S H 0 0 N N N N N N -25.515 27.339 15.268 1.357 -1.257 8.204 H1S1 112 38 112 H1S2 2H1S H 0 0 N N N N N N -25.526 27.896 13.648 -0.114 -0.358 8.642 H1S2 112 39 112 HOG2 2HOG H 0 0 N N N N N N -22.730 29.457 11.278 1.753 -1.430 5.067 HOG2 112 40 112 HOB2 2HOB H 0 0 N N N N N N -24.921 29.624 11.141 -2.377 0.736 3.617 HOB2 112 41 112 HOA2 2HOA H 0 0 N N N N N N -25.559 29.957 8.456 -3.131 0.701 1.161 HOA2 112 42 112 "H5'1" 1H5* H 0 0 N N N N N N -23.001 26.992 8.284 -1.525 -1.089 -1.821 "H5'1" 112 43 112 "H5'2" 2H5* H 0 0 N N N N N N -23.414 26.018 6.932 -2.997 -0.189 -1.383 "H5'2" 112 44 112 "H4'" H4* H 0 1 N N N N N N -21.277 26.939 6.646 -2.411 1.565 -3.050 "H4'" 112 45 112 "H3'" H3* H 0 1 N N N N N N -22.490 29.707 7.184 -3.135 -1.200 -3.636 "H3'" 112 46 112 "HO3'" *HO3 H 0 0 N N N N N N -20.470 29.894 8.209 -4.316 -0.109 -5.299 "HO3'" 112 47 112 "H2'" H2* H 0 1 N N N N N N -20.818 30.643 5.553 -1.329 -1.603 -5.090 "H2'" 112 48 112 "HO2'" *HO2 H 0 0 N N N N N N -19.206 29.296 4.693 -3.032 -1.244 -6.577 "HO2'" 112 49 112 "H1'" H1* H 0 1 N N N N N N -21.197 28.713 3.613 -1.034 1.420 -5.531 "H1'" 112 50 112 H8 H8 H 0 1 N N N N N N -24.511 29.695 5.440 1.450 -1.012 -3.924 H8 112 51 112 HN61 1HN6 H 0 0 N N N N N N -25.317 33.666 0.728 4.814 -0.639 -9.065 HN61 112 52 112 HN62 2HN6 H 0 0 N N N N N N -25.355 33.556 2.365 4.707 -1.209 -7.488 HN62 112 53 112 H2 H2 H 0 1 N N N N N N -21.219 31.722 0.262 0.920 1.593 -9.867 H2 112 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 112 NS C2S SING N N 1 112 NS HNS1 SING N N 2 112 NS HNS2 SING N N 3 112 C2S O2S DOUB N N 4 112 C2S C1S SING N N 5 112 C1S S1G SING N N 6 112 C1S H1S1 SING N N 7 112 C1S H1S2 SING N N 8 112 PG S1G SING N N 9 112 PG O2G SING N N 10 112 PG O3G DOUB N N 11 112 PG O3B SING N N 12 112 O2G HOG2 SING N N 13 112 PB O1B DOUB N N 14 112 PB O2B SING N N 15 112 PB O3B SING N N 16 112 PB O3A SING N N 17 112 O2B HOB2 SING N N 18 112 PA O1A DOUB N N 19 112 PA O2A SING N N 20 112 PA O3A SING N N 21 112 PA "O5'" SING N N 22 112 O2A HOA2 SING N N 23 112 "O5'" "C5'" SING N N 24 112 "C5'" "C4'" SING N N 25 112 "C5'" "H5'1" SING N N 26 112 "C5'" "H5'2" SING N N 27 112 "C4'" "O4'" SING N N 28 112 "C4'" "C3'" SING N N 29 112 "C4'" "H4'" SING N N 30 112 "O4'" "C1'" SING N N 31 112 "C3'" "O3'" SING N N 32 112 "C3'" "C2'" SING N N 33 112 "C3'" "H3'" SING N N 34 112 "O3'" "HO3'" SING N N 35 112 "C2'" "O2'" SING N N 36 112 "C2'" "C1'" SING N N 37 112 "C2'" "H2'" SING N N 38 112 "O2'" "HO2'" SING N N 39 112 "C1'" N9 SING N N 40 112 "C1'" "H1'" SING N N 41 112 N9 C8 SING Y N 42 112 N9 C4 SING Y N 43 112 C8 N7 DOUB Y N 44 112 C8 H8 SING N N 45 112 N7 C5 SING Y N 46 112 C5 C6 SING Y N 47 112 C5 C4 DOUB Y N 48 112 C6 N6 SING N N 49 112 C6 N1 DOUB Y N 50 112 N6 HN61 SING N N 51 112 N6 HN62 SING N N 52 112 N1 C2 SING Y N 53 112 C2 N3 DOUB Y N 54 112 C2 H2 SING N N 55 112 N3 C4 SING Y N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 112 SMILES ACDLabs 10.04 "O=P(O)(SCC(=O)N)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" 112 SMILES_CANONICAL CACTVS 3.341 "NC(=O)CS[P@@](O)(=O)O[P@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 112 SMILES CACTVS 3.341 "NC(=O)CS[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 112 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)O[P@@](=O)(O)SCC(=O)N)O)O)N" 112 SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)SCC(=O)N)O)O)N" 112 InChI InChI 1.03 "InChI=1S/C12H19N6O13P3S/c13-6(19)2-35-34(26,27)31-33(24,25)30-32(22,23)28-1-5-8(20)9(21)12(29-5)18-4-17-7-10(14)15-3-16-11(7)18/h3-5,8-9,12,20-21H,1-2H2,(H2,13,19)(H,22,23)(H,24,25)(H,26,27)(H2,14,15,16)/t5-,8-,9-,12-/m1/s1" 112 InChIKey InChI 1.03 ZAOVTTQZIXCKOL-JJNLEZRASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 112 "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-{[(S)-{[(R)-[(2-amino-2-oxoethyl)sulfanyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]adenosine" 112 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2-amino-2-oxo-ethyl)sulfanyl-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 112 "Create component" 2000-12-04 PDBJ 112 "Modify descriptor" 2011-06-04 RCSB 112 "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 112 PHE None "Covalent chemical modification" "Amino-acid side chain" "Any position" NS CZ ? ? 2 112 TYR None "Covalent chemical modification" "Amino-acid side chain" "Any position" NS CZ ? ? #