data_11U # _chem_comp.id 11U _chem_comp.name "(S)-N-(4-carbamimidoylbenzyl)-1-(2-(cyclohexylamino)ethanoyl)pyrrolidine-2-carboxamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H31 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S)-1-[cyclohexylamino)acetyl-N-{4-[amino(imino)methyl]benzyl}pyrrolidine-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-12-04 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.503 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 11U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3BIV _chem_comp.pdbx_subcomponent_list "M30 PRO 00S" _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 11U C14 C14 C 0 1 N N N -2.516 -6.373 3.685 2.422 0.407 0.336 C M30 1 11U O32 O32 O 0 1 N N N -1.627 -7.011 4.242 2.006 -0.642 0.780 O M30 2 11U C15 C15 C 0 1 N N N -2.941 -6.897 2.395 3.869 0.535 -0.063 CA M30 3 11U N5 N5 N 0 1 N N N -3.140 -8.369 2.351 4.559 -0.738 0.181 N M30 4 11U C16 C16 C 0 1 N N N -3.569 -8.915 1.027 5.976 -0.651 -0.197 C3 M30 5 11U C21 C21 C 0 1 N N N -3.572 -10.471 1.098 6.779 -0.068 0.967 C4 M30 6 11U C20 C20 C 0 1 N N N -4.094 -11.128 -0.210 8.255 0.024 0.573 C5 M30 7 11U C19 C19 C 0 1 N N N -5.496 -10.596 -0.604 8.781 -1.374 0.240 C6 M30 8 11U C18 C18 C 0 1 N N N -5.505 -9.052 -0.704 7.978 -1.957 -0.925 C7 M30 9 11U C17 C17 C 0 1 N N N -4.974 -8.387 0.589 6.502 -2.048 -0.531 C8 M30 10 11U N1 N1 N 0 1 N N N -2.999 -5.260 4.248 1.589 1.458 0.199 N PRO 11 11U C2 C2 C 0 1 N N S -3.727 -4.227 3.592 0.160 1.469 0.542 CA PRO 12 11U C7 C7 C 0 1 N N N -3.292 -3.821 2.240 -0.577 0.458 -0.298 C PRO 13 11U O22 O22 O 0 1 N N N -2.071 -3.444 2.231 0.027 -0.212 -1.108 O PRO 14 11U C3 C3 C 0 1 N N N -3.736 -3.026 4.581 -0.371 2.888 0.246 CB PRO 15 11U C4 C4 C 0 1 N N N -3.288 -3.602 5.931 0.914 3.756 0.278 CG PRO 16 11U C5 C5 C 0 1 N N N -2.980 -5.081 5.645 1.960 2.785 -0.325 CD PRO 17 11U N23 N23 N 0 1 N N N -4.288 -3.942 1.238 -1.907 0.299 -0.149 N23 00S 18 11U C24 C24 C 0 1 N N N -4.108 -3.523 -0.081 -2.623 -0.685 -0.966 C16 00S 19 11U C25 C25 C 0 1 Y N N -5.024 -4.170 -1.071 -4.086 -0.666 -0.607 C17 00S 20 11U C26 C26 C 0 1 Y N N -4.525 -5.074 -2.035 -4.562 -1.498 0.391 C22 00S 21 11U C27 C27 C 0 1 Y N N -5.350 -5.582 -3.056 -5.900 -1.481 0.727 C21 00S 22 11U C28 C28 C 0 1 Y N N -6.716 -5.210 -3.169 -6.775 -0.630 0.052 C24 00S 23 11U C31 C31 C 0 1 N N N -7.510 -5.652 -4.248 -8.213 -0.611 0.405 C27 00S 24 11U N49 N49 N 0 1 N N N -7.062 -6.385 -5.198 -9.028 0.184 -0.227 N35 00S 25 11U N48 N48 N 0 1 N N N -8.752 -5.346 -4.395 -8.689 -1.435 1.402 N34 00S 26 11U C29 C29 C 0 1 Y N N -7.225 -4.355 -2.155 -6.291 0.203 -0.956 C19 00S 27 11U C30 C30 C 0 1 Y N N -6.399 -3.849 -1.127 -4.949 0.180 -1.280 C18 00S 28 11U H15 H15 H 0 1 N N N -3.900 -6.422 2.141 3.933 0.786 -1.122 HA1 M30 29 11U H15A H15A H 0 0 N N N -2.164 -6.643 1.659 4.340 1.322 0.526 HA2 M30 30 11U H20 H20 H 0 1 N N N -2.269 -8.799 2.587 4.459 -1.025 1.143 H2 M30 31 11U H21 H21 H 0 1 N N N -2.853 -8.569 0.267 6.080 -0.005 -1.069 H4 M30 32 11U H301 H301 H 0 0 N N N -2.541 -10.813 1.272 6.404 0.928 1.205 H5 M30 33 11U H31 H31 H 0 1 N N N -4.225 -10.780 1.927 6.675 -0.713 1.839 H6 M30 34 11U H28 H28 H 0 1 N N N -4.160 -12.215 -0.056 8.827 0.439 1.403 H7 M30 35 11U H291 H291 H 0 0 N N N -3.390 -10.901 -1.024 8.359 0.669 -0.299 H8 M30 36 11U H261 H261 H 0 0 N N N -6.222 -10.907 0.162 8.677 -2.019 1.112 H9 M30 37 11U H271 H271 H 0 0 N N N -5.774 -11.017 -1.581 9.832 -1.309 -0.041 H10 M30 38 11U H241 H241 H 0 0 N N N -6.539 -8.716 -0.874 8.353 -2.952 -1.162 H11 M30 39 11U H25 H25 H 0 1 N N N -4.863 -8.750 -1.545 8.082 -1.311 -1.797 H12 M30 40 11U H22 H22 H 0 1 N N N -5.687 -8.596 1.400 6.398 -2.693 0.342 H13 M30 41 11U H23 H23 H 0 1 N N N -4.893 -7.305 0.410 5.930 -2.463 -1.360 H14 M30 42 11U H2 H2 H 0 1 N N N -4.726 -4.628 3.366 0.030 1.240 1.600 HA PRO 43 11U H3 H3 H 0 1 N N N -4.743 -2.590 4.657 -1.072 3.208 1.017 HB2 PRO 44 11U H3A H3A H 0 1 N N N -3.047 -2.238 4.244 -0.836 2.924 -0.739 HB3 PRO 45 11U H4 H4 H 0 1 N N N -4.082 -3.503 6.686 1.177 4.028 1.301 HG2 PRO 46 11U H4A H4A H 0 1 N N N -2.397 -3.079 6.308 0.802 4.644 -0.344 HG3 PRO 47 11U H5 H5 H 0 1 N N N -3.738 -5.723 6.118 2.963 3.056 0.004 HD2 PRO 48 11U H5A H5A H 0 1 N N N -1.990 -5.345 6.046 1.902 2.793 -1.413 HD3 PRO 49 11U HN23 HN23 H 0 0 N N N -5.166 -4.349 1.490 -2.390 0.835 0.499 HN23 00S 50 11U H24 H24 H 0 1 N N N -4.287 -2.438 -0.116 -2.504 -0.437 -2.020 H16 00S 51 11U H24A H24A H 0 0 N N N -3.075 -3.764 -0.372 -2.216 -1.678 -0.778 H16A 00S 52 11U H26 H26 H 0 1 N N N -3.491 -5.381 -1.988 -3.884 -2.159 0.910 H22 00S 53 11U H27 H27 H 0 1 N N N -4.933 -6.274 -3.773 -6.269 -2.127 1.509 H21 00S 54 11U HN49 HN49 H 0 0 N N N -7.765 -6.584 -5.881 -9.970 0.196 0.004 HN35 00S 55 11U HN48 HN48 H 0 0 N N N -9.258 -5.678 -5.191 -8.082 -2.027 1.872 HN34 00S 56 11U HN4A HN4A H 0 0 N N N -9.211 -4.776 -3.713 -9.631 -1.422 1.633 HN3A 00S 57 11U H29 H29 H 0 1 N N N -8.271 -4.085 -2.171 -6.963 0.864 -1.482 H19 00S 58 11U H30 H30 H 0 1 N N N -6.825 -3.206 -0.371 -4.573 0.824 -2.061 H18 00S 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 11U N1 C14 SING N N 1 11U N1 C5 SING N N 2 11U N1 C2 SING N N 3 11U C14 O32 DOUB N N 4 11U C14 C15 SING N N 5 11U C5 C4 SING N N 6 11U C4 C3 SING N N 7 11U C3 C2 SING N N 8 11U C2 C7 SING N N 9 11U C7 N23 SING N N 10 11U C7 O22 DOUB N N 11 11U N23 C24 SING N N 12 11U C24 C25 SING N N 13 11U C25 C30 DOUB Y N 14 11U C25 C26 SING Y N 15 11U C30 C29 SING Y N 16 11U C29 C28 DOUB Y N 17 11U C28 C31 SING N N 18 11U C28 C27 SING Y N 19 11U C31 N49 DOUB N N 20 11U C31 N48 SING N N 21 11U C27 C26 DOUB Y N 22 11U C15 N5 SING N N 23 11U N5 C16 SING N N 24 11U C16 C17 SING N N 25 11U C16 C21 SING N N 26 11U C17 C18 SING N N 27 11U C18 C19 SING N N 28 11U C19 C20 SING N N 29 11U C20 C21 SING N N 30 11U C15 H15 SING N N 31 11U C15 H15A SING N N 32 11U C5 H5 SING N N 33 11U C5 H5A SING N N 34 11U C4 H4 SING N N 35 11U C4 H4A SING N N 36 11U C3 H3 SING N N 37 11U C3 H3A SING N N 38 11U C2 H2 SING N N 39 11U N23 HN23 SING N N 40 11U C24 H24 SING N N 41 11U C24 H24A SING N N 42 11U C30 H30 SING N N 43 11U C29 H29 SING N N 44 11U N49 HN49 SING N N 45 11U N48 HN48 SING N N 46 11U N48 HN4A SING N N 47 11U C27 H27 SING N N 48 11U C26 H26 SING N N 49 11U N5 H20 SING N N 50 11U C16 H21 SING N N 51 11U C17 H22 SING N N 52 11U C17 H23 SING N N 53 11U C18 H241 SING N N 54 11U C18 H25 SING N N 55 11U C19 H261 SING N N 56 11U C19 H271 SING N N 57 11U C20 H28 SING N N 58 11U C20 H291 SING N N 59 11U C21 H301 SING N N 60 11U C21 H31 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 11U SMILES ACDLabs 12.01 "O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)CNC2CCCCC2)CCC3" 11U InChI InChI 1.03 "InChI=1S/C21H31N5O2/c22-20(23)16-10-8-15(9-11-16)13-25-21(28)18-7-4-12-26(18)19(27)14-24-17-5-2-1-3-6-17/h8-11,17-18,24H,1-7,12-14H2,(H3,22,23)(H,25,28)/t18-/m0/s1" 11U InChIKey InChI 1.03 RYKFVFFOIYLADT-SFHVURJKSA-N 11U SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1ccc(CNC(=O)[C@@H]2CCCN2C(=O)CNC3CCCCC3)cc1" 11U SMILES CACTVS 3.385 "NC(=N)c1ccc(CNC(=O)[CH]2CCCN2C(=O)CNC3CCCCC3)cc1" 11U SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)CNC3CCCCC3)\N" 11U SMILES "OpenEye OEToolkits" 1.7.5 "c1cc(ccc1CNC(=O)C2CCCN2C(=O)CNC3CCCCC3)C(=N)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 11U "SYSTEMATIC NAME" ACDLabs 12.01 "N-cyclohexylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide" 11U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cyclohexylamino)ethanoyl]pyrrolidine-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 11U "Create component" 2007-12-04 PDBJ 11U "Other modification" 2011-02-17 RCSB 11U "Modify aromatic_flag" 2011-06-04 RCSB 11U "Modify descriptor" 2011-06-04 RCSB 11U "Modify descriptor" 2012-01-05 RCSB 11U "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 11U _pdbx_chem_comp_synonyms.name "(2S)-1-[cyclohexylamino)acetyl-N-{4-[amino(imino)methyl]benzyl}pyrrolidine-2-carboxamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##