data_125 # _chem_comp.id 125 _chem_comp.name "2'-O-FLUOROETHYL-5-METHYL-URIDINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H18 F N2 O9 P" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-02-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 384.251 _chem_comp.one_letter_code U _chem_comp.three_letter_code 125 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1I0M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 125 P P P 0 1 N N N 10.871 3.836 5.153 0.630 -0.054 -4.837 P 125 1 125 OP1 O1P O 0 1 N N N 12.098 4.354 4.488 1.190 1.297 -4.620 OP1 125 2 125 OP2 O2P O 0 1 N N N 10.988 3.078 6.421 1.680 -0.943 -5.673 OP2 125 3 125 OP3 O3P O 0 1 N Y N 10.085 2.946 4.074 -0.748 0.060 -5.659 OP3 125 4 125 "O5'" O5* O 0 1 N N N 9.897 5.073 5.376 0.350 -0.753 -3.414 "O5'" 125 5 125 "C5'" C5* C 0 1 N N N 9.620 5.968 4.293 -0.584 0.077 -2.722 "C5'" 125 6 125 "C4'" C4* C 0 1 N N R 8.588 6.990 4.696 -0.895 -0.533 -1.354 "C4'" 125 7 125 "O4'" O4* O 0 1 N N N 7.301 6.352 4.903 0.304 -0.611 -0.554 "O4'" 125 8 125 "C3'" C3* C 0 1 N N R 8.839 7.723 6.000 -1.844 0.387 -0.555 "C3'" 125 9 125 "O3'" O3* O 0 1 N N N 9.769 8.775 5.879 -3.194 -0.067 -0.665 "O3'" 125 10 125 "C2'" C2* C 0 1 N N R 7.451 8.228 6.362 -1.347 0.263 0.904 "C2'" 125 11 125 "O2'" O2* O 0 1 N N N 7.171 9.328 5.494 -2.376 -0.269 1.740 "O2'" 125 12 125 "C1'" C1* C 0 1 N N R 6.587 7.042 5.925 -0.155 -0.714 0.811 "C1'" 125 13 125 N1 N1 N 0 1 N N N 6.342 6.111 7.054 0.906 -0.315 1.738 N1 125 14 125 C2 C2 C 0 1 N N N 5.242 6.342 7.855 1.458 0.907 1.632 C2 125 15 125 O2 O2 O 0 1 N N N 4.470 7.263 7.673 1.069 1.667 0.766 O2 125 16 125 N3 N3 N 0 1 N N N 5.084 5.455 8.889 2.434 1.300 2.471 N3 125 17 125 C4 C4 C 0 1 N N N 5.899 4.388 9.205 2.873 0.470 3.439 C4 125 18 125 O4 O4 O 0 1 N N N 5.632 3.685 10.177 3.757 0.825 4.198 O4 125 19 125 C5 C5 C 0 1 N N N 7.036 4.199 8.328 2.305 -0.820 3.558 C5 125 20 125 C5M C5M C 0 1 N N N 7.980 3.070 8.601 2.780 -1.768 4.629 C5M 125 21 125 C6 C6 C 0 1 N N N 7.193 5.055 7.305 1.326 -1.188 2.704 C6 125 22 125 "CA'" CA* C 0 1 N N N 5.904 9.952 5.632 -3.098 0.844 2.268 "CA'" 125 23 125 "CB'" CB* C 0 1 N N N 5.877 11.130 4.688 -4.221 0.340 3.176 "CB'" 125 24 125 "FC'" FC* F 0 1 N N N 6.976 11.959 4.894 -3.672 -0.400 4.228 "FC'" 125 25 125 HOP2 2HOP H 0 0 N N N 10.205 2.747 6.845 1.820 -0.490 -6.516 HOP2 125 26 125 HOP3 3HOP H 0 0 N N N 9.302 2.615 4.498 -1.079 -0.840 -5.778 HOP3 125 27 125 "H5'" 1H5* H 0 1 N N N 10.548 6.449 3.906 -1.502 0.153 -3.304 "H5'" 125 28 125 "H5''" 2H5* H 0 0 N N N 9.319 5.419 3.370 -0.156 1.071 -2.588 "H5''" 125 29 125 "H4'" H4* H 0 1 N N N 8.630 7.718 3.852 -1.337 -1.522 -1.473 "H4'" 125 30 125 "H3'" H3* H 0 1 N N N 9.298 7.069 6.777 -1.759 1.417 -0.902 "H3'" 125 31 125 "HO3'" H3T H 0 0 N Y N 9.926 9.234 6.695 -3.427 -0.025 -1.603 "HO3'" 125 32 125 "H2'" H2* H 0 1 N N N 7.308 8.543 7.421 -1.016 1.232 1.278 "H2'" 125 33 125 "H1'" H1* H 0 1 N N N 5.599 7.411 5.563 -0.481 -1.732 1.025 "H1'" 125 34 125 H3 H3 H 0 1 N N N 4.272 5.605 9.488 2.822 2.184 2.380 H3 125 35 125 H71 1H5M H 0 1 N N N 8.855 2.924 7.925 3.568 -1.291 5.212 H71 125 36 125 H72 2H5M H 0 1 N N N 8.345 3.152 9.651 1.947 -2.024 5.284 H72 125 37 125 H73 3H5M H 0 1 N N N 7.399 2.119 8.647 3.169 -2.674 4.165 H73 125 38 125 H6 H6 H 0 1 N N N 8.058 4.883 6.642 0.878 -2.168 2.782 H6 125 39 125 "HA'1" 1HA* H 0 0 N N N 5.052 9.249 5.475 -2.421 1.476 2.843 "HA'1" 125 40 125 "HA'2" 2HA* H 0 0 N N N 5.668 10.232 6.685 -3.525 1.422 1.448 "HA'2" 125 41 125 "HB'1" 1HB* H 0 0 N N N 5.801 10.803 3.624 -4.771 1.190 3.579 "HB'1" 125 42 125 "HB'2" 2HB* H 0 0 N N N 4.917 11.693 4.760 -4.898 -0.291 2.601 "HB'2" 125 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 125 P OP1 DOUB N N 1 125 P OP2 SING N N 2 125 P OP3 SING N N 3 125 P "O5'" SING N N 4 125 OP2 HOP2 SING N N 5 125 OP3 HOP3 SING N N 6 125 "O5'" "C5'" SING N N 7 125 "C5'" "C4'" SING N N 8 125 "C5'" "H5'" SING N N 9 125 "C5'" "H5''" SING N N 10 125 "C4'" "O4'" SING N N 11 125 "C4'" "C3'" SING N N 12 125 "C4'" "H4'" SING N N 13 125 "O4'" "C1'" SING N N 14 125 "C3'" "O3'" SING N N 15 125 "C3'" "C2'" SING N N 16 125 "C3'" "H3'" SING N N 17 125 "O3'" "HO3'" SING N N 18 125 "C2'" "O2'" SING N N 19 125 "C2'" "C1'" SING N N 20 125 "C2'" "H2'" SING N N 21 125 "O2'" "CA'" SING N N 22 125 "C1'" N1 SING N N 23 125 "C1'" "H1'" SING N N 24 125 N1 C2 SING N N 25 125 N1 C6 SING N N 26 125 C2 O2 DOUB N N 27 125 C2 N3 SING N N 28 125 N3 C4 SING N N 29 125 N3 H3 SING N N 30 125 C4 O4 DOUB N N 31 125 C4 C5 SING N N 32 125 C5 C5M SING N N 33 125 C5 C6 DOUB N N 34 125 C5M H71 SING N N 35 125 C5M H72 SING N N 36 125 C5M H73 SING N N 37 125 C6 H6 SING N N 38 125 "CA'" "CB'" SING N N 39 125 "CA'" "HA'1" SING N N 40 125 "CA'" "HA'2" SING N N 41 125 "CB'" "FC'" SING N N 42 125 "CB'" "HB'1" SING N N 43 125 "CB'" "HB'2" SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 125 SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2OCCF)COP(=O)(O)O" 125 SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OCCF)C(=O)NC1=O" 125 SMILES CACTVS 3.341 "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OCCF)C(=O)NC1=O" 125 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCCF" 125 SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)OCCF" 125 InChI InChI 1.03 "InChI=1S/C12H18FN2O9P/c1-6-4-15(12(18)14-10(6)17)11-9(22-3-2-13)8(16)7(24-11)5-23-25(19,20)21/h4,7-9,11,16H,2-3,5H2,1H3,(H,14,17,18)(H2,19,20,21)/t7-,8-,9-,11-/m1/s1" 125 InChIKey InChI 1.03 MUGZYWKCXQUUJO-TURQNECASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 125 "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-O-(2-fluoroethyl)-5-methyluridine 5'-(dihydrogen phosphate) ; 125 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-4-(2-fluoroethoxy)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 125 "Create component" 2001-02-09 RCSB 125 "Modify descriptor" 2011-06-04 RCSB #