data_12D # _chem_comp.id 12D _chem_comp.name ;2',3'-O-[(1R,6R)-2,4,6-trinitrocyclohexa-2,4-diene-1,1-diyl]adenosine 5'-(trihydrogen diphosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H16 N8 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-11-01 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 638.290 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 12D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3B5J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 12D P1 P1 P 0 1 N N N 23.561 1.027 29.143 -7.402 -0.436 -0.490 P1 12D 1 12D O1 O1 O 0 1 N N N 22.340 1.387 29.952 -7.882 0.480 -1.724 O1 12D 2 12D O2 O2 O 0 1 N N N 23.428 1.344 27.672 -7.745 0.234 0.784 O2 12D 3 12D O3 O3 O 0 1 N N N 24.018 -0.383 29.425 -8.143 -1.864 -0.562 O3 12D 4 12D P2 P2 P 0 1 N N S 25.410 3.250 29.056 -4.699 -1.181 0.469 P2 12D 5 12D O4 O4 O 0 1 N N N 26.471 2.885 28.037 -4.987 -0.640 1.816 O4 12D 6 12D O5 O5 O 0 1 N N N 24.328 4.210 28.658 -4.731 -2.790 0.519 O5 12D 7 12D O6 O6 O 0 1 N N N 24.771 1.918 29.705 -5.809 -0.654 -0.570 O6 12D 8 12D O7 O7 O 0 1 N N N 26.150 3.894 30.331 -3.241 -0.688 -0.006 O7 12D 9 12D C1 C1 C 0 1 N N N 27.376 3.377 30.851 -2.057 -0.906 0.763 C1 12D 10 12D C2 C2 C 0 1 N N R 27.906 4.331 31.914 -0.854 -0.314 0.025 C2 12D 11 12D O8 O8 O 0 1 N N N 28.436 5.514 31.301 -0.925 1.128 0.025 O8 12D 12 12D C3 C3 C 0 1 N N R 26.736 4.762 32.778 0.453 -0.647 0.776 C3 12D 13 12D O9 O9 O 0 1 N N N 27.049 4.755 34.167 1.159 -1.669 0.043 O9 12D 14 12D C4 C4 C 0 1 N N R 26.447 6.201 32.413 1.319 0.632 0.604 C4 12D 15 12D O10 O10 O 0 1 N N N 26.255 6.872 33.647 2.433 0.214 -0.211 O10 12D 16 12D C5 C5 C 0 1 N N R 27.714 6.685 31.725 0.424 1.575 -0.229 C5 12D 17 12D N1 N1 N 0 1 Y N N 27.474 7.653 30.619 0.593 2.961 0.213 N1 12D 18 12D C6 C6 C 0 1 Y N N 26.670 7.502 29.552 -0.152 3.604 1.157 C6 12D 19 12D N2 N2 N 0 1 Y N N 26.740 8.614 28.787 0.272 4.826 1.303 N2 12D 20 12D C7 C7 C 0 1 Y N N 27.589 9.467 29.385 1.313 5.045 0.464 C7 12D 21 12D C8 C8 C 0 1 Y N N 28.044 10.740 29.067 2.146 6.142 0.189 C8 12D 22 12D N3 N3 N 0 1 N N N 27.609 11.361 27.939 1.978 7.343 0.855 N3 12D 23 12D N4 N4 N 0 1 Y N N 28.926 11.341 29.901 3.099 6.000 -0.727 N4 12D 24 12D C9 C9 C 0 1 Y N N 29.360 10.745 31.025 3.266 4.858 -1.368 C9 12D 25 12D N5 N5 N 0 1 Y N N 28.939 9.508 31.342 2.510 3.804 -1.143 N5 12D 26 12D C10 C10 C 0 1 Y N N 28.054 8.856 30.540 1.535 3.850 -0.241 C10 12D 27 12D C11 C11 C 0 1 N N R 26.554 5.978 34.733 2.521 -1.208 -0.012 C11 12D 28 12D C12 C12 C 0 1 N N R 25.247 5.787 35.492 3.233 -1.513 1.301 C12 12D 29 12D C13 C13 C 0 1 N N N 25.120 6.226 36.804 3.541 -2.985 1.392 C13 12D 30 12D C14 C14 C 0 1 N N N 26.156 6.815 37.506 3.838 -3.676 0.299 C14 12D 31 12D C15 C15 C 0 1 N N N 27.390 7.006 36.904 3.842 -3.017 -1.016 C15 12D 32 12D C16 C16 C 0 1 N N N 27.639 6.616 35.594 3.234 -1.846 -1.170 C16 12D 33 12D N6 N6 N 1 1 N N N 24.115 5.234 34.957 4.482 -0.750 1.365 N6 12D 34 12D N7 N7 N 1 1 N N N 25.967 7.218 38.787 4.167 -5.115 0.403 N7 12D 35 12D N8 N8 N 1 1 N N N 28.898 6.863 35.133 3.259 -1.168 -2.486 N8 12D 36 12D O11 O11 O 0 1 N N N 24.031 4.737 33.658 5.341 -0.915 0.517 O11 12D 37 12D O12 O12 O -1 1 N N N 22.971 5.140 35.750 4.661 0.051 2.265 O12 12D 38 12D O13 O13 O 0 1 N N N 27.014 7.817 39.480 4.440 -5.752 -0.599 O13 12D 39 12D O14 O14 O -1 1 N N N 24.738 7.038 39.418 4.165 -5.663 1.491 O14 12D 40 12D O15 O15 O -1 1 N N N 29.848 7.472 35.946 3.837 -1.684 -3.426 O15 12D 41 12D O16 O16 O 0 1 N N N 29.296 6.529 33.850 2.702 -0.095 -2.629 O16 12D 42 12D H1 H1 H 0 1 N N N 27.200 2.387 31.298 -2.161 -0.424 1.735 H1 12D 43 12D H2 H2 H 0 1 N N N 28.112 3.280 30.039 -1.906 -1.977 0.902 H2 12D 44 12D H3 H3 H 0 1 N N N 28.691 3.825 32.496 -0.812 -0.693 -0.996 H3 12D 45 12D H4 H4 H 0 1 N N N 25.899 4.069 32.606 0.283 -0.918 1.818 H4 12D 46 12D H5 H5 H 0 1 N N N 25.573 6.358 31.764 1.631 1.064 1.555 H5 12D 47 12D H6 H6 H 0 1 N N N 28.314 7.271 32.437 0.660 1.484 -1.289 H6 12D 48 12D H7 H7 H 0 1 N N N 26.066 6.632 29.340 -0.973 3.163 1.704 H7 12D 49 12D H8 H8 H 0 1 N N N 27.502 12.339 28.117 1.279 7.435 1.522 H8 12D 50 12D H9 H9 H 0 1 N N N 28.276 11.226 27.206 2.559 8.094 0.656 H9 12D 51 12D H10 H10 H 0 1 N N N 30.050 11.262 31.676 4.053 4.785 -2.104 H10 12D 52 12D H11 H11 H 0 1 N N N 25.986 5.331 34.817 2.592 -1.225 2.134 H11 12D 53 12D H12 H12 H 0 1 N N N 24.168 6.102 37.299 3.521 -3.480 2.352 H12 12D 54 12D H13 H13 H 0 1 N N N 28.182 7.472 37.471 4.339 -3.484 -1.854 H13 12D 55 12D H14 H14 H 0 1 N N N 22.578 1.463 30.869 -8.833 0.653 -1.739 H14 12D 56 12D H15 H15 H 0 1 N N N 24.114 -0.855 28.606 -7.964 -2.360 -1.372 H15 12D 57 12D H16 H16 H 0 1 N N N 23.790 4.413 29.414 -4.549 -3.213 -0.331 H16 12D 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 12D P1 O3 SING N N 1 12D P1 O6 SING N N 2 12D P1 O1 SING N N 3 12D O1 H14 SING N N 4 12D O2 P1 DOUB N N 5 12D O3 H15 SING N N 6 12D P2 O6 SING N N 7 12D P2 O7 SING N N 8 12D O4 P2 DOUB N N 9 12D O5 P2 SING N N 10 12D O5 H16 SING N N 11 12D O7 C1 SING N N 12 12D C1 C2 SING N N 13 12D C1 H1 SING N N 14 12D C1 H2 SING N N 15 12D C2 C3 SING N N 16 12D C2 H3 SING N N 17 12D O8 C5 SING N N 18 12D O8 C2 SING N N 19 12D C3 O9 SING N N 20 12D C3 H4 SING N N 21 12D O9 C11 SING N N 22 12D C4 C3 SING N N 23 12D C4 O10 SING N N 24 12D C4 H5 SING N N 25 12D O10 C11 SING N N 26 12D C5 C4 SING N N 27 12D C5 H6 SING N N 28 12D N1 C5 SING N N 29 12D C6 N1 SING Y N 30 12D C6 H7 SING N N 31 12D N2 C7 SING Y N 32 12D N2 C6 DOUB Y N 33 12D C7 C10 SING Y N 34 12D C8 C7 DOUB Y N 35 12D C8 N4 SING Y N 36 12D N3 C8 SING N N 37 12D N3 H8 SING N N 38 12D N3 H9 SING N N 39 12D N4 C9 DOUB Y N 40 12D C9 N5 SING Y N 41 12D C9 H10 SING N N 42 12D C10 N1 SING Y N 43 12D C10 N5 DOUB Y N 44 12D C11 C12 SING N N 45 12D C11 C16 SING N N 46 12D C12 C13 SING N N 47 12D C12 H11 SING N N 48 12D C13 C14 DOUB N N 49 12D C13 H12 SING N N 50 12D C14 N7 SING N N 51 12D C15 C14 SING N N 52 12D C15 H13 SING N N 53 12D C16 C15 DOUB N N 54 12D N6 C12 SING N N 55 12D N6 O12 SING N N 56 12D N7 O14 SING N N 57 12D N7 O13 DOUB N N 58 12D N8 C16 SING N N 59 12D N8 O15 SING N N 60 12D O11 N6 DOUB N N 61 12D O16 N8 DOUB N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 12D SMILES ACDLabs 10.04 "[O-][N+](=O)C5=CC([N+]([O-])=O)=CC([N+]([O-])=O)C35OC4C(OC(n1c2ncnc(N)c2nc1)C4O3)COP(=O)(O)OP(=O)(O)O" 12D SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@H]4O[C@@]5(O[C@@H]34)[C@@H](C=C(C=C5[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O" 12D SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH]4O[C]5(O[CH]34)[CH](C=C(C=C5[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O" 12D SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O[C@@]5(O4)[C@@H](C=C(C=C5[N+](=O)[O-])[N+](=O)[O-])[N+](=O)[O-])N" 12D SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(O)OP(=O)(O)O)OC5(O4)C(C=C(C=C5[N+](=O)[O-])[N+](=O)[O-])[N+](=O)[O-])N" 12D InChI InChI 1.03 "InChI=1S/C16H16N8O16P2/c17-13-10-14(19-4-18-13)21(5-20-10)15-12-11(7(37-15)3-36-42(34,35)40-41(31,32)33)38-16(39-12)8(23(27)28)1-6(22(25)26)2-9(16)24(29)30/h1-2,4-5,7-8,11-12,15H,3H2,(H,34,35)(H2,17,18,19)(H2,31,32,33)/t7-,8-,11-,12-,15-,16-/m1/s1" 12D InChIKey InChI 1.03 WYOHYTDXVJMKHS-BENPRDFYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 12D "SYSTEMATIC NAME" ACDLabs 10.04 ;2',3'-O-[(1R,6R)-2,4,6-trinitrocyclohexa-2,4-diene-1,1-diyl]adenosine 5'-(trihydrogen diphosphate) ; 12D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;[(2R,3aR,4R,5'R,6R,6aR)-4-(6-aminopurin-9-yl)-1',3',5'-trinitro-spiro[3a,4,6,6a-tetrahydrofuro[4,3-d][1,3]dioxole-2,6'-cyclohexa-1,3-diene]-6-yl]methyl phosphono hydrogen phosphate ; # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 12D "Create component" 2007-11-01 RCSB 12D "Modify descriptor" 2011-06-04 RCSB #