data_146 # _chem_comp.id 146 _chem_comp.name "[4R-(4ALPHA,5ALPHA,6ALPHA,7ALPHA)]-3,3'-{{TETRAHYDRO-5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)-1H-1,3-DIAZEPINE-1,3(2H)-DIYL]BIS(METHYLENE)]BIS[N-1H-BENZIMIDAZOL-2-YLBENZAMIDE]" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C49 H44 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SD146 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 824.924 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 146 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BWB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 146 C1 C1 C 0 1 N N N -9.042 15.605 27.839 -2.479 -1.339 0.219 C1 146 1 146 C2 C2 C 0 1 N N N -9.757 15.070 30.107 -4.063 -0.073 1.484 C2 146 2 146 C3 C3 C 0 1 N N R -11.039 16.771 28.804 -3.450 0.664 -0.828 C3 146 3 146 C4 C4 C 0 1 N N S -10.787 18.252 28.595 -2.092 1.034 -1.440 C4 146 4 146 C5 C5 C 0 1 N N S -10.376 18.493 27.160 -1.656 0.038 -2.504 C5 146 5 146 C6 C6 C 0 1 N N R -8.989 17.947 26.931 -2.176 -1.357 -2.208 C6 146 6 146 C7 C7 C 0 1 N N N -8.186 15.972 25.614 -0.673 -2.689 -0.673 C7 146 7 146 C20 C20 C 0 1 Y N N -9.701 15.825 31.422 -3.274 0.791 2.433 C20 146 8 146 C21 C21 C 0 1 Y N N -10.415 15.324 32.520 -2.430 0.209 3.355 C21 146 9 146 C22 C22 C 0 1 Y N N -10.312 15.961 33.770 -1.696 1.012 4.230 C22 146 10 146 C23 C23 C 0 1 Y N N -9.514 17.104 33.916 -1.830 2.400 4.173 C23 146 11 146 C24 C24 C 0 1 Y N N -8.803 17.620 32.819 -2.683 2.969 3.250 C24 146 12 146 C25 C25 C 0 1 Y N N -8.900 16.977 31.572 -3.403 2.168 2.382 C25 146 13 146 C26 C26 C 0 1 N N N -11.014 15.411 34.969 -0.784 0.394 5.216 C26 146 14 146 C27 C27 C 0 1 Y N N -11.640 13.239 36.032 0.772 0.594 6.986 C27 146 15 146 C9 C9 C 0 1 Y N N -12.359 12.412 39.445 2.490 -2.019 8.742 C9 146 16 146 C11 C11 C 0 1 Y N N -12.565 11.103 39.927 3.393 -1.847 9.771 C11 146 17 146 C13 C13 C 0 1 Y N N -12.513 9.980 39.069 3.713 -0.574 10.220 C13 146 18 146 C14 C14 C 0 1 Y N N -12.252 10.124 37.695 3.135 0.535 9.645 C14 146 19 146 C28 C28 C 0 1 Y N N -12.039 11.412 37.168 2.219 0.378 8.602 C28 146 20 146 C29 C29 C 0 1 Y N N -12.092 12.598 38.073 1.898 -0.913 8.152 C29 146 21 146 C31 C31 C 0 1 N N N -12.098 16.131 27.860 -4.330 0.042 -1.914 C31 146 22 146 C32 C32 C 0 1 Y N N -12.820 14.938 28.454 -5.582 0.865 -2.078 C32 146 23 146 C33 C33 C 0 1 Y N N -12.475 13.618 28.070 -5.609 1.912 -2.981 C33 146 24 146 C34 C34 C 0 1 Y N N -13.130 12.515 28.673 -6.757 2.666 -3.131 C34 146 25 146 C35 C35 C 0 1 Y N N -14.131 12.728 29.655 -7.879 2.374 -2.379 C35 146 26 146 C36 C36 C 0 1 Y N N -14.478 14.046 30.036 -7.854 1.326 -1.477 C36 146 27 146 C37 C37 C 0 1 Y N N -13.823 15.149 29.433 -6.707 0.569 -1.330 C37 146 28 146 C61 C61 C 0 1 N N N -7.909 18.514 27.884 -1.583 -2.341 -3.218 C61 146 29 146 C62 C62 C 0 1 Y N N -6.491 18.341 27.389 -2.097 -2.017 -4.597 C62 146 30 146 C63 C63 C 0 1 Y N N -6.029 19.140 26.307 -1.351 -1.218 -5.443 C63 146 31 146 C64 C64 C 0 1 Y N N -4.737 18.921 25.786 -1.822 -0.920 -6.708 C64 146 32 146 C65 C65 C 0 1 Y N N -3.919 17.920 26.356 -3.040 -1.423 -7.127 C65 146 33 146 C66 C66 C 0 1 Y N N -4.374 17.139 27.440 -3.785 -2.223 -6.282 C66 146 34 146 C67 C67 C 0 1 Y N N -5.662 17.343 27.964 -3.312 -2.524 -5.019 C67 146 35 146 C70 C70 C 0 1 Y N N -8.858 16.327 24.314 0.569 -1.895 -0.364 C70 146 36 146 C71 C71 C 0 1 Y N N -8.034 16.624 23.218 1.456 -1.585 -1.374 C71 146 37 146 C72 C72 C 0 1 Y N N -8.623 16.913 21.966 2.604 -0.844 -1.086 C72 146 38 146 C73 C73 C 0 1 Y N N -10.027 16.884 21.811 2.852 -0.431 0.223 C73 146 39 146 C74 C74 C 0 1 Y N N -10.854 16.580 22.912 1.959 -0.753 1.224 C74 146 40 146 C75 C75 C 0 1 Y N N -10.268 16.312 24.163 0.820 -1.482 0.932 C75 146 41 146 C76 C76 C 0 1 N N N -7.766 17.293 20.800 3.556 -0.503 -2.164 C76 146 42 146 C77 C77 C 0 1 Y N N -5.567 16.877 19.707 5.557 0.527 -2.892 C77 146 43 146 C15 C15 C 0 1 Y N N -4.720 17.243 16.230 8.484 1.962 -4.318 C15 146 44 146 C8 C8 C 0 1 Y N N -3.662 16.568 15.573 8.871 1.923 -5.639 C8 146 45 146 C10 C10 C 0 1 Y N N -2.797 15.690 16.277 8.091 1.271 -6.582 C10 146 46 146 C12 C12 C 0 1 Y N N -2.960 15.459 17.666 6.915 0.652 -6.210 C12 146 47 146 C78 C78 C 0 1 Y N N -4.017 16.114 18.359 6.509 0.683 -4.884 C78 146 48 146 C79 C79 C 0 1 Y N N -4.924 17.034 17.609 7.295 1.342 -3.925 C79 146 49 146 N2 N2 N 0 1 N N N -9.863 15.885 28.886 -3.286 -0.290 0.261 N2 146 50 146 N7 N7 N 0 1 N N N -8.838 16.474 26.827 -1.803 -1.776 -0.856 N7 146 51 146 N26 N26 N 0 1 N N N -11.237 14.087 34.902 -0.081 1.172 6.063 N26 146 52 146 N3 N3 N 0 1 Y N N -11.837 13.688 37.287 0.980 -0.746 7.129 N3 146 53 146 N27 N27 N 0 1 Y N N -11.756 11.899 35.919 1.504 1.253 7.848 N27 146 54 146 N76 N76 N 0 1 N N N -6.494 16.845 20.857 4.666 0.208 -1.883 N76 146 55 146 N1 N1 N 0 1 Y N N -5.844 17.467 18.519 6.659 1.216 -2.731 N1 146 56 146 N77 N77 N 0 1 Y N N -4.485 16.088 19.658 5.415 0.176 -4.203 N77 146 57 146 O1 O1 O 0 1 N N N -8.462 14.528 27.808 -2.336 -1.965 1.251 O1 146 58 146 O4 O4 O 0 1 N N N -12.001 18.905 28.879 -2.186 2.332 -2.029 O4 146 59 146 O5 O5 O 0 1 N N N -10.307 19.860 26.890 -0.228 0.002 -2.553 O5 146 60 146 O26 O26 O 0 1 N N N -11.321 16.084 35.937 -0.669 -0.814 5.264 O26 146 61 146 O76 O76 O 0 1 N N N -8.192 17.934 19.856 3.339 -0.863 -3.304 O76 146 62 146 H21A 1H2 H 0 0 N N N -8.878 14.388 30.028 -5.001 0.422 1.235 H21A 146 63 146 H22 2H2 H 0 1 N N N -10.588 14.327 30.135 -4.273 -1.032 1.956 H22 146 64 146 H3 H3 H 0 1 N N N -11.462 16.824 29.834 -3.932 1.564 -0.447 H3 146 65 146 H4 H4 H 0 1 N N N -9.970 18.632 29.252 -1.342 1.057 -0.649 H4 146 66 146 H5 H5 H 0 1 N N N -11.130 17.996 26.506 -2.037 0.363 -3.473 H5 146 67 146 H6 H6 H 0 1 N N N -8.811 18.336 25.901 -3.263 -1.362 -2.299 H6 146 68 146 H71A 1H7 H 0 0 N N N -8.053 14.867 25.683 -0.884 -3.369 0.152 H71A 146 69 146 H72 2H7 H 0 1 N N N -7.120 16.299 25.592 -0.519 -3.265 -1.586 H72 146 70 146 H21 H21 H 0 1 N N N -11.054 14.433 32.401 -2.330 -0.865 3.394 H21 146 71 146 H23 H23 H 0 1 N N N -9.445 17.599 34.898 -1.268 3.026 4.850 H23 146 72 146 H24 H24 H 0 1 N N N -8.175 18.519 32.935 -2.788 4.043 3.204 H24 146 73 146 H25 H25 H 0 1 N N N -8.345 17.378 30.707 -4.068 2.619 1.661 H25 146 74 146 H9 H9 H 0 1 N N N -12.405 13.275 40.129 2.244 -3.012 8.398 H9 146 75 146 H11 H11 H 0 1 N N N -12.771 10.954 41.000 3.853 -2.709 10.231 H11 146 76 146 H13 H13 H 0 1 N N N -12.679 8.970 39.480 4.421 -0.452 11.026 H13 146 77 146 H14 H14 H 0 1 N N N -12.214 9.238 37.039 3.388 1.523 10.000 H14 146 78 146 H311 1H31 H 0 0 N N N -12.830 16.899 27.517 -3.784 0.021 -2.857 H311 146 79 146 H312 2H31 H 0 0 N N N -11.635 15.860 26.882 -4.599 -0.973 -1.627 H312 146 80 146 H33 H33 H 0 1 N N N -11.699 13.449 27.304 -4.732 2.140 -3.568 H33 146 81 146 H34 H34 H 0 1 N N N -12.859 11.487 28.377 -6.777 3.484 -3.836 H34 146 82 146 H35 H35 H 0 1 N N N -14.639 11.868 30.122 -8.777 2.964 -2.496 H35 146 83 146 H36 H36 H 0 1 N N N -15.255 14.212 30.799 -8.730 1.098 -0.889 H36 146 84 146 H37 H37 H 0 1 N N N -14.095 16.176 29.727 -6.686 -0.248 -0.625 H37 146 85 146 H611 1H61 H 0 0 N N N -8.114 19.586 28.111 -0.496 -2.261 -3.208 H611 146 86 146 H612 2H61 H 0 0 N N N -8.021 18.078 28.904 -1.875 -3.357 -2.951 H612 146 87 146 H63 H63 H 0 1 N N N -6.670 19.926 25.873 -0.400 -0.825 -5.115 H63 146 88 146 H64 H64 H 0 1 N N N -4.369 19.526 24.940 -1.240 -0.295 -7.368 H64 146 89 146 H65 H65 H 0 1 N N N -2.909 17.745 25.948 -3.409 -1.190 -8.115 H65 146 90 146 H66 H66 H 0 1 N N N -3.720 16.366 27.879 -4.737 -2.616 -6.609 H66 146 91 146 H67 H67 H 0 1 N N N -6.015 16.731 28.810 -3.894 -3.150 -4.358 H67 146 92 146 H71 H71 H 0 1 N N N -6.937 16.630 23.339 1.259 -1.908 -2.385 H71 146 93 146 H73 H73 H 0 1 N N N -10.478 17.099 20.828 3.740 0.138 0.453 H73 146 94 146 H74 H74 H 0 1 N N N -11.950 16.552 22.795 2.149 -0.434 2.239 H74 146 95 146 H75 H75 H 0 1 N N N -10.915 16.089 25.027 0.124 -1.731 1.719 H75 146 96 146 H15 H15 H 0 1 N N N -5.380 17.927 15.671 9.097 2.471 -3.589 H15 146 97 146 H8 H8 H 0 1 N N N -3.508 16.729 14.492 9.790 2.402 -5.942 H8 146 98 146 H10 H10 H 0 1 N N N -1.983 15.178 15.735 8.406 1.247 -7.615 H10 146 99 146 H12 H12 H 0 1 N N N -2.274 14.779 18.199 6.312 0.146 -6.949 H12 146 100 146 HN6 HN6 H 0 1 N N N -11.095 13.713 33.963 -0.173 2.137 6.025 HN6 146 101 146 HN3 HN3 H 0 1 N N N -11.800 14.663 37.584 0.563 -1.452 6.610 HN3 146 102 146 HN7 HN7 H 0 1 N N N -6.232 16.480 21.773 4.840 0.496 -0.973 HN7 146 103 146 HN77 7HN7 H 0 0 N N N -4.096 15.572 20.448 4.684 -0.332 -4.587 HN77 146 104 146 HO4 HO4 H 0 1 N N N -11.843 19.832 28.748 -1.311 2.541 -2.386 HO4 146 105 146 HO5 HO5 H 0 1 N N N -10.048 20.011 25.988 0.066 0.896 -2.774 HO5 146 106 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 146 C1 N2 SING N N 1 146 C1 N7 SING N N 2 146 C1 O1 DOUB N N 3 146 C2 C20 SING N N 4 146 C2 N2 SING N N 5 146 C2 H21A SING N N 6 146 C2 H22 SING N N 7 146 C3 C4 SING N N 8 146 C3 C31 SING N N 9 146 C3 N2 SING N N 10 146 C3 H3 SING N N 11 146 C4 C5 SING N N 12 146 C4 O4 SING N N 13 146 C4 H4 SING N N 14 146 C5 C6 SING N N 15 146 C5 O5 SING N N 16 146 C5 H5 SING N N 17 146 C6 C61 SING N N 18 146 C6 N7 SING N N 19 146 C6 H6 SING N N 20 146 C7 C70 SING N N 21 146 C7 N7 SING N N 22 146 C7 H71A SING N N 23 146 C7 H72 SING N N 24 146 C20 C21 DOUB Y N 25 146 C20 C25 SING Y N 26 146 C21 C22 SING Y N 27 146 C21 H21 SING N N 28 146 C22 C23 DOUB Y N 29 146 C22 C26 SING N N 30 146 C23 C24 SING Y N 31 146 C23 H23 SING N N 32 146 C24 C25 DOUB Y N 33 146 C24 H24 SING N N 34 146 C25 H25 SING N N 35 146 C26 N26 SING N N 36 146 C26 O26 DOUB N N 37 146 C27 N26 SING N N 38 146 C27 N3 SING Y N 39 146 C27 N27 DOUB Y N 40 146 C9 C11 SING Y N 41 146 C9 C29 DOUB Y N 42 146 C9 H9 SING N N 43 146 C11 C13 DOUB Y N 44 146 C11 H11 SING N N 45 146 C13 C14 SING Y N 46 146 C13 H13 SING N N 47 146 C14 C28 DOUB Y N 48 146 C14 H14 SING N N 49 146 C28 C29 SING Y N 50 146 C28 N27 SING Y N 51 146 C29 N3 SING Y N 52 146 C31 C32 SING N N 53 146 C31 H311 SING N N 54 146 C31 H312 SING N N 55 146 C32 C33 DOUB Y N 56 146 C32 C37 SING Y N 57 146 C33 C34 SING Y N 58 146 C33 H33 SING N N 59 146 C34 C35 DOUB Y N 60 146 C34 H34 SING N N 61 146 C35 C36 SING Y N 62 146 C35 H35 SING N N 63 146 C36 C37 DOUB Y N 64 146 C36 H36 SING N N 65 146 C37 H37 SING N N 66 146 C61 C62 SING N N 67 146 C61 H611 SING N N 68 146 C61 H612 SING N N 69 146 C62 C63 DOUB Y N 70 146 C62 C67 SING Y N 71 146 C63 C64 SING Y N 72 146 C63 H63 SING N N 73 146 C64 C65 DOUB Y N 74 146 C64 H64 SING N N 75 146 C65 C66 SING Y N 76 146 C65 H65 SING N N 77 146 C66 C67 DOUB Y N 78 146 C66 H66 SING N N 79 146 C67 H67 SING N N 80 146 C70 C71 DOUB Y N 81 146 C70 C75 SING Y N 82 146 C71 C72 SING Y N 83 146 C71 H71 SING N N 84 146 C72 C73 DOUB Y N 85 146 C72 C76 SING N N 86 146 C73 C74 SING Y N 87 146 C73 H73 SING N N 88 146 C74 C75 DOUB Y N 89 146 C74 H74 SING N N 90 146 C75 H75 SING N N 91 146 C76 N76 SING N N 92 146 C76 O76 DOUB N N 93 146 C77 N76 SING N N 94 146 C77 N1 DOUB Y N 95 146 C77 N77 SING Y N 96 146 C15 C8 DOUB Y N 97 146 C15 C79 SING Y N 98 146 C15 H15 SING N N 99 146 C8 C10 SING Y N 100 146 C8 H8 SING N N 101 146 C10 C12 DOUB Y N 102 146 C10 H10 SING N N 103 146 C12 C78 SING Y N 104 146 C12 H12 SING N N 105 146 C78 C79 DOUB Y N 106 146 C78 N77 SING Y N 107 146 C79 N1 SING Y N 108 146 N26 HN6 SING N N 109 146 N3 HN3 SING N N 110 146 N76 HN7 SING N N 111 146 N77 HN77 SING N N 112 146 O4 HO4 SING N N 113 146 O5 HO5 SING N N 114 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 146 SMILES ACDLabs 10.04 "O=C(Nc1nc2ccccc2n1)c3cc(ccc3)CN5C(=O)N(C(Cc4ccccc4)C(O)C(O)C5Cc6ccccc6)Cc7cccc(c7)C(=O)Nc9nc8ccccc8n9" 146 SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1[C@@H](O)[C@@H](Cc2ccccc2)N(Cc3cccc(c3)C(=O)Nc4[nH]c5ccccc5n4)C(=O)N(Cc6cccc(c6)C(=O)Nc7[nH]c8ccccc8n7)[C@@H]1Cc9ccccc9" 146 SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](Cc2ccccc2)N(Cc3cccc(c3)C(=O)Nc4[nH]c5ccccc5n4)C(=O)N(Cc6cccc(c6)C(=O)Nc7[nH]c8ccccc8n7)[CH]1Cc9ccccc9" 146 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C[C@@H]2[C@@H]([C@H]([C@H](N(C(=O)N2Cc3cccc(c3)C(=O)Nc4[nH]c5ccccc5n4)Cc6cccc(c6)C(=O)Nc7[nH]c8ccccc8n7)Cc9ccccc9)O)O" 146 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)CC2C(C(C(N(C(=O)N2Cc3cccc(c3)C(=O)Nc4[nH]c5ccccc5n4)Cc6cccc(c6)C(=O)Nc7[nH]c8ccccc8n7)Cc9ccccc9)O)O" 146 InChI InChI 1.03 "InChI=1S/C49H44N8O5/c58-43-41(27-31-13-3-1-4-14-31)56(29-33-17-11-19-35(25-33)45(60)54-47-50-37-21-7-8-22-38(37)51-47)49(62)57(42(44(43)59)28-32-15-5-2-6-16-32)30-34-18-12-20-36(26-34)46(61)55-48-52-39-23-9-10-24-40(39)53-48/h1-26,41-44,58-59H,27-30H2,(H2,50,51,54,60)(H2,52,53,55,61)/t41-,42-,43+,44+/m1/s1" 146 InChIKey InChI 1.03 UWSVAGUSMAEUKO-QHQGJXSCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 146 "SYSTEMATIC NAME" ACDLabs 10.04 "3,3'-{[(4R,5S,6S,7R)-4,7-dibenzyl-5,6-dihydroxy-2-oxo-1,3-diazepane-1,3-diyl]dimethanediyl}bis(N-1H-benzimidazol-2-ylbenzamide)" 146 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-(1H-benzimidazol-2-yl)-3-[[(4R,5S,6S,7R)-3-[[3-(1H-benzimidazol-2-ylcarbamoyl)phenyl]methyl]-5,6-dihydroxy-2-oxo-4,7-bis(phenylmethyl)-1,3-diazepan-1-yl]methyl]benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 146 "Create component" 1999-07-08 RCSB 146 "Modify descriptor" 2011-06-04 RCSB 146 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 146 _pdbx_chem_comp_synonyms.name SD146 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##