data_15B
#
_chem_comp.id 15B
_chem_comp.name "N-{3-[4-(3-AMINO-PROPYL)-PIPERAZIN-1-YL]-PROPYL}-3-NITRO-5-(GALACTOPYRANOSYL)-BETA-BENZAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H37 N5 O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-07-17
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 527.568
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 15B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
15B C1 C1 C 0 1 N N S 19.540 24.601 47.348 -2.079 1.445 -6.890 C1 15B 1
15B O1 O1 O 0 1 N N N 18.427 25.434 47.391 -2.742 0.180 -6.890 O1 15B 2
15B C7 C7 C 0 1 Y N N 18.053 26.026 46.121 -1.992 -0.904 -7.256 C7 15B 3
15B C8 C8 C 0 1 Y N N 17.334 27.204 46.188 -2.369 -1.664 -8.359 C8 15B 4
15B C9 C9 C 0 1 Y N N 16.966 27.839 45.021 -1.604 -2.769 -8.732 C9 15B 5
15B N14 N14 N 1 1 N N N 16.270 28.968 45.095 -1.985 -3.549 -9.857 N14 15B 6
15B O15 O15 O -1 1 N N N 15.921 29.562 44.079 -1.283 -4.539 -10.175 O15 15B 7
15B O16 O16 O 0 1 N N N 15.990 29.406 46.199 -3.012 -3.226 -10.500 O16 15B 8
15B C10 C10 C 0 1 Y N N 17.311 27.308 43.789 -0.466 -3.108 -8.001 C10 15B 9
15B C11 C11 C 0 1 Y N N 18.045 26.121 43.719 -0.092 -2.343 -6.896 C11 15B 10
15B C12 C12 C 0 1 Y N N 18.430 25.475 44.896 -0.858 -1.238 -6.523 C12 15B 11
15B C13 C13 C 0 1 N N N 18.413 25.595 42.479 1.093 -2.697 -6.132 C13 15B 12
15B N18 N18 N 0 1 N N N 17.695 25.858 41.464 1.745 -1.661 -5.453 N18 15B 13
15B C19 C19 C 0 1 N N N 17.916 25.410 40.084 2.946 -1.850 -4.672 C19 15B 14
15B C20 C20 C 0 1 N N N 18.493 26.558 39.246 4.217 -1.669 -5.498 C20 15B 15
15B C21 C21 C 0 1 N N N 19.805 26.139 38.595 4.340 -0.292 -6.148 C21 15B 16
15B N22 N22 N 0 1 N N N 20.178 26.720 37.513 4.324 0.793 -5.169 N22 15B 17
15B C23 C23 C 0 1 N N N 19.085 26.746 36.544 5.483 0.705 -4.273 C23 15B 18
15B C24 C24 C 0 1 N N N 19.558 26.878 35.104 5.468 1.844 -3.248 C24 15B 19
15B N25 N25 N 0 1 N N N 20.457 25.798 34.727 5.435 3.150 -3.917 N25 15B 20
15B C28 C28 C 0 1 N N N 20.687 25.785 33.532 5.417 4.235 -2.937 C28 15B 21
15B C35 C35 C 0 1 N N N 19.946 24.983 32.900 6.682 4.275 -2.083 C35 15B 22
15B C36 C36 C 0 1 N N N 19.142 25.594 31.764 7.967 4.442 -2.892 C36 15B 23
15B N37 N37 N 0 1 N N N 17.900 24.872 31.539 9.138 4.500 -2.061 N37 15B 24
15B C26 C26 C 0 1 N N N 21.667 25.937 35.520 4.276 3.238 -4.813 C26 15B 25
15B C27 C27 C 0 1 N N N 21.367 26.001 37.021 4.292 2.099 -5.839 C27 15B 26
15B O17 O17 O 0 1 N N N 19.392 24.894 42.392 1.505 -3.871 -6.114 O17 15B 27
15B C2 C2 C 0 1 N N R 20.186 24.552 48.727 -3.077 2.561 -7.205 C2 15B 28
15B O2 O2 O 0 1 N N N 20.644 25.855 49.071 -3.555 2.375 -8.537 O2 15B 29
15B C3 C3 C 0 1 N N S 21.338 23.536 48.709 -2.410 3.931 -7.095 C3 15B 30
15B O3 O3 O 0 1 N N N 21.901 23.404 50.005 -3.400 4.948 -7.223 O3 15B 31
15B C4 C4 C 0 1 N N R 20.843 22.177 48.194 -1.671 4.076 -5.764 C4 15B 32
15B O4 O4 O 0 1 N N N 20.013 21.578 49.192 -2.636 4.109 -4.710 O4 15B 33
15B C5 C5 C 0 1 N N R 20.089 22.389 46.879 -0.719 2.892 -5.567 C5 15B 34
15B C6 C6 C 0 1 N N N 19.534 21.079 46.338 0.003 2.926 -4.226 C6 15B 35
15B O6 O6 O 0 1 N N N 19.001 21.253 45.024 0.846 1.791 -4.136 O6 15B 36
15B O5 O5 O 0 1 N N N 19.015 23.332 47.020 -1.452 1.662 -5.627 O5 15B 37
15B H1 H1 H 0 1 N N N 20.302 24.939 46.631 -1.307 1.381 -7.666 H1 15B 38
15B H2 H2 H 0 1 N N N 19.458 24.230 49.486 -3.949 2.503 -6.542 H2 15B 39
15B HO2 HO2 H 0 1 N N N 20.746 25.917 50.013 -3.560 1.419 -8.697 HO2 15B 40
15B H3 H3 H 0 1 N N N 22.120 23.902 48.027 -1.709 4.062 -7.929 H3 15B 41
15B HO3 HO3 H 0 1 N N N 22.848 23.375 49.938 -4.114 4.571 -7.761 HO3 15B 42
15B H4 H4 H 0 1 N N N 21.686 21.498 47.998 -1.132 5.030 -5.739 H4 15B 43
15B HO4 HO4 H 0 1 N N N 20.517 21.445 49.986 -3.306 3.446 -4.933 HO4 15B 44
15B H5 H5 H 0 1 N N N 20.823 22.794 46.167 0.037 2.888 -6.363 H5 15B 45
15B H61 1H6 H 0 1 N N N 20.344 20.336 46.300 -0.721 2.901 -3.411 H61 15B 46
15B H62 2H6 H 0 1 N N N 18.726 20.738 47.003 0.609 3.830 -4.150 H62 15B 47
15B HO6 HO6 H 0 1 N N N 18.053 21.292 45.069 0.646 1.227 -4.902 HO6 15B 48
15B H8 H8 H 0 1 N N N 17.063 27.623 47.146 -3.258 -1.393 -8.925 H8 15B 49
15B H10 H10 H 0 1 N N N 17.012 27.812 42.882 0.132 -3.970 -8.290 H10 15B 50
15B H12 H12 H 0 1 N N N 19.010 24.565 44.858 -0.570 -0.638 -5.662 H12 15B 51
15B H18 H18 H 0 1 N N N 16.892 26.433 41.623 1.403 -0.711 -5.553 H18 15B 52
15B H191 1H19 H 0 0 N N N 18.624 24.568 40.084 2.919 -1.111 -3.864 H191 15B 53
15B H192 2H19 H 0 0 N N N 16.957 25.092 39.649 2.899 -2.846 -4.221 H192 15B 54
15B H201 1H20 H 0 0 N N N 17.772 26.828 38.461 5.092 -1.833 -4.858 H201 15B 55
15B H202 2H20 H 0 0 N N N 18.682 27.419 39.904 4.240 -2.441 -6.278 H202 15B 56
15B H211 1H21 H 0 0 N N N 20.594 26.329 39.337 5.263 -0.204 -6.730 H211 15B 57
15B H212 2H21 H 0 0 N N N 19.635 25.095 38.294 3.496 -0.123 -6.824 H212 15B 58
15B H231 1H23 H 0 0 N N N 18.522 25.805 36.636 6.420 0.733 -4.846 H231 15B 59
15B H232 2H23 H 0 0 N N N 18.470 27.630 36.769 5.459 -0.250 -3.734 H232 15B 60
15B H241 1H24 H 0 0 N N N 18.680 26.853 34.441 4.605 1.728 -2.577 H241 15B 61
15B H242 2H24 H 0 0 N N N 20.105 27.828 35.009 6.372 1.770 -2.631 H242 15B 62
15B H261 1H26 H 0 0 N N N 22.314 25.069 35.328 4.301 4.192 -5.353 H261 15B 63
15B H262 2H26 H 0 0 N N N 22.158 26.878 35.230 3.338 3.209 -4.242 H262 15B 64
15B H271 1H27 H 0 0 N N N 22.234 26.497 37.482 3.389 2.173 -6.456 H271 15B 65
15B H272 2H27 H 0 0 N N N 21.160 24.953 37.286 5.156 2.214 -6.508 H272 15B 66
15B H281 1H28 H 0 0 N N N 20.520 26.797 33.136 4.521 4.114 -2.321 H281 15B 67
15B H282 2H28 H 0 0 N N N 21.727 25.454 33.397 5.317 5.168 -3.499 H282 15B 68
15B H351 1H35 H 0 0 N N N 20.593 24.205 32.467 6.740 3.348 -1.499 H351 15B 69
15B H352 2H35 H 0 0 N N N 19.211 24.607 33.627 6.610 5.102 -1.367 H352 15B 70
15B H361 1H36 H 0 0 N N N 18.904 26.637 32.020 7.932 5.379 -3.457 H361 15B 71
15B H362 2H36 H 0 0 N N N 19.745 25.539 30.846 8.102 3.622 -3.604 H362 15B 72
15B H371 1H37 H 0 0 N N N 17.447 24.706 32.415 9.842 3.784 -2.152 H371 15B 73
15B H372 2H37 H 0 0 N N N 17.301 25.415 30.951 9.150 5.123 -1.269 H372 15B 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
15B C1 O1 SING N N 1
15B C1 C2 SING N N 2
15B C1 O5 SING N N 3
15B C1 H1 SING N N 4
15B O1 C7 SING N N 5
15B C7 C8 DOUB Y N 6
15B C7 C12 SING Y N 7
15B C8 C9 SING Y N 8
15B C8 H8 SING N N 9
15B C9 N14 SING N N 10
15B C9 C10 DOUB Y N 11
15B N14 O15 SING N N 12
15B N14 O16 DOUB N N 13
15B C10 C11 SING Y N 14
15B C10 H10 SING N N 15
15B C11 C12 DOUB Y N 16
15B C11 C13 SING N N 17
15B C12 H12 SING N N 18
15B C13 N18 SING N N 19
15B C13 O17 DOUB N N 20
15B N18 C19 SING N N 21
15B N18 H18 SING N N 22
15B C19 C20 SING N N 23
15B C19 H191 SING N N 24
15B C19 H192 SING N N 25
15B C20 C21 SING N N 26
15B C20 H201 SING N N 27
15B C20 H202 SING N N 28
15B C21 N22 SING N N 29
15B C21 H211 SING N N 30
15B C21 H212 SING N N 31
15B N22 C23 SING N N 32
15B N22 C27 SING N N 33
15B C23 C24 SING N N 34
15B C23 H231 SING N N 35
15B C23 H232 SING N N 36
15B C24 N25 SING N N 37
15B C24 H241 SING N N 38
15B C24 H242 SING N N 39
15B N25 C28 SING N N 40
15B N25 C26 SING N N 41
15B C28 C35 SING N N 42
15B C28 H281 SING N N 43
15B C28 H282 SING N N 44
15B C35 C36 SING N N 45
15B C35 H351 SING N N 46
15B C35 H352 SING N N 47
15B C36 N37 SING N N 48
15B C36 H361 SING N N 49
15B C36 H362 SING N N 50
15B N37 H371 SING N N 51
15B N37 H372 SING N N 52
15B C26 C27 SING N N 53
15B C26 H261 SING N N 54
15B C26 H262 SING N N 55
15B C27 H271 SING N N 56
15B C27 H272 SING N N 57
15B C2 O2 SING N N 58
15B C2 C3 SING N N 59
15B C2 H2 SING N N 60
15B O2 HO2 SING N N 61
15B C3 O3 SING N N 62
15B C3 C4 SING N N 63
15B C3 H3 SING N N 64
15B O3 HO3 SING N N 65
15B C4 O4 SING N N 66
15B C4 C5 SING N N 67
15B C4 H4 SING N N 68
15B O4 HO4 SING N N 69
15B C5 C6 SING N N 70
15B C5 O5 SING N N 71
15B C5 H5 SING N N 72
15B C6 O6 SING N N 73
15B C6 H61 SING N N 74
15B C6 H62 SING N N 75
15B O6 HO6 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
15B SMILES ACDLabs 10.04 "[O-][N+](=O)c3cc(OC1OC(C(O)C(O)C1O)CO)cc(C(=O)NCCCN2CCN(CCCN)CC2)c3"
15B SMILES_CANONICAL CACTVS 3.341 "NCCCN1CCN(CCCNC(=O)c2cc(O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)cc(c2)[N+]([O-])=O)CC1"
15B SMILES CACTVS 3.341 "NCCCN1CCN(CCCNC(=O)c2cc(O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)cc(c2)[N+]([O-])=O)CC1"
15B SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(cc(cc1[N+](=O)[O-])O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)C(=O)NCCCN3CCN(CC3)CCCN"
15B SMILES "OpenEye OEToolkits" 1.5.0 "c1c(cc(cc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)O)C(=O)NCCCN3CCN(CC3)CCCN"
15B InChI InChI 1.03
"InChI=1S/C23H37N5O9/c24-3-1-5-26-7-9-27(10-8-26)6-2-4-25-22(33)15-11-16(28(34)35)13-17(12-15)36-23-21(32)20(31)19(30)18(14-29)37-23/h11-13,18-21,23,29-32H,1-10,14,24H2,(H,25,33)/t18-,19+,20+,21-,23-/m1/s1"
15B InChIKey InChI 1.03 UEIGEWJJVQHIAX-DLBZZEGUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
15B "SYSTEMATIC NAME" ACDLabs 10.04 "N-{3-[4-(3-aminopropyl)piperazin-1-yl]propyl}-3-(beta-D-galactopyranosyloxy)-5-nitrobenzamide"
15B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[3-[4-(3-aminopropyl)piperazin-1-yl]propyl]-3-nitro-5-[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-benzamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
15B "Create component" 2003-07-17 RCSB
15B "Modify descriptor" 2011-06-04 RCSB
#