data_18D # _chem_comp.id 18D _chem_comp.name "3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H21 N O9" _chem_comp.mon_nstd_parent_comp_id SIA _chem_comp.pdbx_synonyms ;3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosonic acid; 3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosonic acid; 3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosonic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-04-27 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.296 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 18D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WGT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 18D "3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosonic acid" PDB ? 2 18D "3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosonic acid" PDB ? 3 18D "3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosonic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 18D C1 C1 C 0 1 N N N 57.040 45.770 68.615 -1.463 2.439 0.861 C1 18D 1 18D C2 C2 C 0 1 N N R 55.788 46.427 68.077 -1.203 2.083 -0.581 C2 18D 2 18D C3 C3 C 0 1 N N N 55.383 45.841 66.715 0.221 2.498 -0.960 C3 18D 3 18D C4 C4 C 0 1 N N S 54.679 44.491 66.799 1.218 1.715 -0.101 C4 18D 4 18D C5 C5 C 0 1 N N R 53.562 44.580 67.832 0.978 0.215 -0.297 C5 18D 5 18D C6 C6 C 0 1 N N R 54.202 44.953 69.170 -0.475 -0.112 0.057 C6 18D 6 18D C7 C7 C 0 1 N N R 53.249 44.873 70.361 -0.740 -1.597 -0.194 C7 18D 7 18D C8 C8 C 0 1 N N R 53.894 45.377 71.651 -2.222 -1.898 0.040 C8 18D 8 18D C9 C9 C 0 1 N N N 53.012 45.087 72.862 -2.487 -3.384 -0.212 C9 18D 9 18D C10 C10 C 0 1 N N N 51.638 43.071 67.662 3.131 -0.824 0.172 C10 18D 10 18D C11 C11 C 0 1 N N N 51.098 41.682 67.903 4.056 -1.604 1.070 C11 18D 11 18D N5 N5 N 0 1 N N N 52.919 43.277 67.991 1.877 -0.544 0.576 N5 18D 12 18D O1B O1 O 0 1 N N N 57.991 45.595 67.852 -0.641 1.990 1.822 O1B 18D 13 18D O1A O3 O 0 1 N N N 57.086 45.425 69.816 -2.409 3.133 1.151 O1A 18D 14 18D O2 O2 O 0 1 N Y N 56.058 47.817 67.888 -2.138 2.768 -1.417 O2 18D 15 18D O4 O4 O 0 1 N N N 54.165 44.176 65.499 2.551 2.041 -0.498 O4 18D 16 18D O6 O6 O 0 1 N N N 54.736 46.280 69.044 -1.350 0.673 -0.757 O6 18D 17 18D O7 O7 O 0 1 N N N 52.093 45.659 70.082 -0.396 -1.921 -1.543 O7 18D 18 18D O8 O8 O 0 1 N N N 55.183 44.782 71.845 -2.567 -1.574 1.388 O8 18D 19 18D O9 O9 O 0 1 N N N 52.807 43.676 72.995 -3.889 -3.642 -0.107 O9 18D 20 18D C22 C22 C 0 1 N N N 50.022 41.312 66.906 5.409 -1.784 0.378 C22 18D 21 18D O10 O10 O 0 1 N N N 50.933 43.944 67.183 3.516 -0.448 -0.915 O10 18D 22 18D HO2 H2 H 0 1 N Y N 56.118 48.246 68.733 -3.062 2.553 -1.232 HO2 18D 23 18D H32 H31C H 0 1 N N N 54.696 46.551 66.232 0.396 2.277 -2.013 H32 18D 24 18D H31 H32C H 0 1 N N N 56.312 45.681 66.148 0.348 3.566 -0.784 H31 18D 25 18D H4 H4 H 0 1 N N N 55.371 43.695 67.112 1.077 1.974 0.949 H4 18D 26 18D HO4 HA H 0 1 N Y N 53.218 44.106 65.541 2.771 2.979 -0.407 HO4 18D 27 18D H5 H5 H 0 1 N N N 52.815 45.321 67.511 1.169 -0.052 -1.337 H5 18D 28 18D H6 H6 H 0 1 N N N 54.989 44.216 69.385 -0.654 0.117 1.107 H6 18D 29 18D H7 H7 H 0 1 N N N 52.983 43.816 70.509 -0.136 -2.195 0.488 H7 18D 30 18D H8 H8 H 0 1 N N N 54.011 46.466 71.552 -2.826 -1.301 -0.643 H8 18D 31 18D HO7 HB H 0 1 N Y N 51.626 45.834 70.890 -0.896 -1.426 -2.206 HO7 18D 32 18D H92 H91C H 0 1 N N N 53.504 45.469 73.769 -2.142 -3.651 -1.211 H92 18D 33 18D H91 H92C H 0 1 N N N 52.039 45.581 72.726 -1.952 -3.978 0.529 H91 18D 34 18D HO8 HC H 0 1 N Y N 55.602 44.650 71.002 -2.067 -2.069 2.052 HO8 18D 35 18D HO9 H9 H 0 1 N Y N 52.762 43.279 72.133 -4.130 -4.567 -0.255 HO9 18D 36 18D HN5 HD H 0 1 N N N 53.453 42.515 68.357 1.569 -0.844 1.446 HN5 18D 37 18D H111 H111 H 0 0 N N N 51.925 40.962 67.811 4.196 -1.063 2.006 H111 18D 38 18D H113 H112 H 0 0 N N N 50.654 41.658 68.909 3.621 -2.582 1.278 H113 18D 39 18D H221 H221 H 0 0 N N N 49.056 41.222 67.425 5.269 -2.325 -0.558 H221 18D 40 18D H222 H222 H 0 0 N N N 49.953 42.093 66.135 5.843 -0.806 0.171 H222 18D 41 18D H223 H223 H 0 0 N N N 50.275 40.351 66.434 6.077 -2.348 1.028 H223 18D 42 18D HO1B H1 H 0 0 N N N 58.704 45.180 68.324 -0.848 2.244 2.731 HO1B 18D 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 18D O1A C1 DOUB N N 1 18D C1 O1B SING N N 2 18D C1 C2 SING N N 3 18D C2 O2 SING N N 4 18D C2 C3 SING N N 5 18D C2 O6 SING N N 6 18D C3 C4 SING N N 7 18D C4 O4 SING N N 8 18D C4 C5 SING N N 9 18D O6 C6 SING N N 10 18D C6 C7 SING N N 11 18D C6 C5 SING N N 12 18D C7 C8 SING N N 13 18D C7 O7 SING N N 14 18D C8 C9 SING N N 15 18D C8 O8 SING N N 16 18D C9 O9 SING N N 17 18D C5 N5 SING N N 18 18D N5 C10 SING N N 19 18D C10 O10 DOUB N N 20 18D C10 C11 SING N N 21 18D C11 C22 SING N N 22 18D O2 HO2 SING N N 23 18D C3 H32 SING N N 24 18D C3 H31 SING N N 25 18D C4 H4 SING N N 26 18D O4 HO4 SING N N 27 18D C5 H5 SING N N 28 18D C6 H6 SING N N 29 18D C7 H7 SING N N 30 18D C8 H8 SING N N 31 18D O7 HO7 SING N N 32 18D C9 H92 SING N N 33 18D C9 H91 SING N N 34 18D O8 HO8 SING N N 35 18D O9 HO9 SING N N 36 18D N5 HN5 SING N N 37 18D C11 H111 SING N N 38 18D C11 H113 SING N N 39 18D C22 H221 SING N N 40 18D C22 H222 SING N N 41 18D C22 H223 SING N N 42 18D O1B HO1B SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 18D SMILES ACDLabs 10.04 "O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)CC)C(O)C1" 18D SMILES_CANONICAL CACTVS 3.352 "CCC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O" 18D SMILES CACTVS 3.352 "CCC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O" 18D SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CCC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O" 18D SMILES "OpenEye OEToolkits" 1.6.1 "CCC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O" 18D InChI InChI 1.03 "InChI=1S/C12H21NO9/c1-2-7(17)13-8-5(15)3-12(21,11(19)20)22-10(8)9(18)6(16)4-14/h5-6,8-10,14-16,18,21H,2-4H2,1H3,(H,13,17)(H,19,20)/t5-,6+,8+,9+,10+,12+/m0/s1" 18D InChIKey InChI 1.03 QZBCMZXFDLYCRV-BLMTXZDNSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 18D "SYSTEMATIC NAME" ACDLabs 10.04 "3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid" 18D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R,4S,5R,6R)-2,4-dihydroxy-5-(propanoylamino)-6-[(1R,2R)-1,2,3-trihydroxypropyl]oxane-2-carboxylic acid" # _pdbx_chem_comp_related.comp_id 18D _pdbx_chem_comp_related.related_comp_id SIA _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 18D C1 SIA C1 "Carbohydrate core" 2 18D C10 SIA C10 "Carbohydrate core" 3 18D C11 SIA C11 "Carbohydrate core" 4 18D C2 SIA C2 "Carbohydrate core" 5 18D C3 SIA C3 "Carbohydrate core" 6 18D C4 SIA C4 "Carbohydrate core" 7 18D C5 SIA C5 "Carbohydrate core" 8 18D C6 SIA C6 "Carbohydrate core" 9 18D C7 SIA C7 "Carbohydrate core" 10 18D C8 SIA C8 "Carbohydrate core" 11 18D C9 SIA C9 "Carbohydrate core" 12 18D N5 SIA N5 "Carbohydrate core" 13 18D O1B SIA O1B "Carbohydrate core" 14 18D O10 SIA O10 "Carbohydrate core" 15 18D O2 SIA O2 "Carbohydrate core" 16 18D O1A SIA O1A "Carbohydrate core" 17 18D O4 SIA O4 "Carbohydrate core" 18 18D O6 SIA O6 "Carbohydrate core" 19 18D O7 SIA O7 "Carbohydrate core" 20 18D O8 SIA O8 "Carbohydrate core" 21 18D O9 SIA O9 "Carbohydrate core" 22 18D HO1B SIA HO1B "Carbohydrate core" 23 18D H111 SIA H111 "Carbohydrate core" 24 18D H113 SIA H113 "Carbohydrate core" 25 18D HO2 SIA HO2 "Carbohydrate core" 26 18D H32 SIA H32 "Carbohydrate core" 27 18D H31 SIA H31 "Carbohydrate core" 28 18D H4 SIA H4 "Carbohydrate core" 29 18D H5 SIA H5 "Carbohydrate core" 30 18D H6 SIA H6 "Carbohydrate core" 31 18D H7 SIA H7 "Carbohydrate core" 32 18D H8 SIA H8 "Carbohydrate core" 33 18D HO9 SIA HO9 "Carbohydrate core" 34 18D H92 SIA H92 "Carbohydrate core" 35 18D H91 SIA H91 "Carbohydrate core" 36 18D HO4 SIA HO4 "Carbohydrate core" 37 18D HO7 SIA HO7 "Carbohydrate core" 38 18D HO8 SIA HO8 "Carbohydrate core" 39 18D HN5 SIA HN5 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 18D "CARBOHYDRATE ISOMER" D PDB ? 18D "CARBOHYDRATE RING" pyranose PDB ? 18D "CARBOHYDRATE ANOMER" alpha PDB ? 18D "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 18D "Create component" 2009-04-27 EBI 18D "Modify descriptor" 2011-06-04 RCSB 18D "Other modification" 2020-07-03 RCSB 18D "Modify parent residue" 2020-07-17 RCSB 18D "Modify name" 2020-07-17 RCSB 18D "Modify synonyms" 2020-07-17 RCSB 18D "Modify internal type" 2020-07-17 RCSB 18D "Modify linking type" 2020-07-17 RCSB 18D "Modify atom id" 2020-07-17 RCSB 18D "Modify component atom id" 2020-07-17 RCSB 18D "Modify leaving atom flag" 2020-07-17 RCSB ##