data_18Y # _chem_comp.id 18Y _chem_comp.name "Trioxacarcin A analogue, bound form" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H40 O14" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1S,2R,3aS,4S,13aS)-2-(dimethoxymethyl)-1,12-dihydroxy-7-methoxy-1,5-dimethyl-11-oxo-1,2,3a,4,8,9,10,11-octahydro-13aH-2,4-epoxyfuro[3,2-b]naphtho[2,3-h]chromen-13a-yl 4-C-acetyl-2,6-dideoxy-alpha-L-xylo-hexopyranoside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-11-08 _chem_comp.pdbx_modified_date 2021-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 660.662 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 18Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4HP7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 18Y C3 C3 C 0 1 N N N 5.187 7.107 3.972 -6.798 -2.080 -1.365 C3 18Y 1 18Y C5 C5 C 0 1 Y N N 8.903 2.748 6.282 -3.113 1.331 2.166 C5 18Y 2 18Y O1 O1 O 0 1 N N N 7.513 9.024 5.804 -3.645 -2.690 -2.745 O1 18Y 3 18Y "C7'" "C7'" C 0 1 N N N 17.047 8.436 8.489 4.998 -3.039 0.788 "C7'" 18Y 4 18Y "O7'" "O7'" O 0 1 N N N 17.187 7.458 9.267 5.142 -1.841 0.847 "O7'" 18Y 5 18Y "C8'" "C8'" C 0 1 N N N 18.057 9.448 8.206 6.203 -3.939 0.687 "C8'" 18Y 6 18Y C1 C1 C 0 1 N N N 6.929 8.067 5.312 -4.416 -2.448 -1.840 C1 18Y 7 18Y C2 C2 C 0 1 N N N 5.690 8.260 4.479 -5.758 -3.141 -1.748 C2 18Y 8 18Y C4 C4 C 0 1 N N N 5.664 5.759 3.988 -6.482 -1.542 0.028 C4 18Y 9 18Y C6 C6 C 0 1 Y N N 9.986 2.523 7.116 -1.841 1.808 2.252 C6 18Y 10 18Y C7 C7 C 0 1 Y N N 10.692 3.586 7.652 -0.840 1.380 1.378 C7 18Y 11 18Y O8 O8 O 0 1 N N N 10.762 5.999 8.027 -0.177 0.014 -0.449 O8 18Y 12 18Y C8 C8 C 0 1 Y N N 10.164 4.901 7.384 -1.127 0.453 0.402 C8 18Y 13 18Y O9 O9 O 0 1 N N N 9.216 7.510 6.810 -1.821 -1.430 -1.573 O9 18Y 14 18Y C9 C9 C 0 1 Y N N 8.581 6.490 6.286 -2.767 -0.993 -0.707 C9 18Y 15 18Y O10 O10 O 0 1 N N N 6.678 3.238 4.520 -5.719 0.310 1.931 O10 18Y 16 18Y C19 C19 C 0 1 Y N N 7.316 4.326 5.166 -4.757 -0.116 1.069 C19 18Y 17 18Y O11 O11 O 0 1 N N N 11.612 3.097 9.859 0.640 3.175 0.766 O11 18Y 18 18Y C11 C11 C 0 1 N N S 11.863 3.377 8.439 0.539 1.953 1.527 C11 18Y 19 18Y O12 O12 O 0 1 N N N 13.388 4.431 9.843 2.598 2.045 0.516 O12 18Y 20 18Y C12 C12 C 0 1 N N S 12.749 4.602 8.623 1.605 1.022 0.900 C12 18Y 21 18Y O13 O13 O 0 1 N N N 12.499 7.041 9.136 2.025 -0.285 -1.120 O13 18Y 22 18Y C13 C13 C 0 1 N N S 11.877 5.845 8.978 1.095 0.609 -0.506 C13 18Y 23 18Y O14 O14 O 0 1 N N N 11.836 6.443 11.409 1.857 1.906 -2.441 O14 18Y 24 18Y C14 C14 C 0 1 N N S 11.364 5.407 10.512 1.060 1.962 -1.257 C14 18Y 25 18Y C15 C15 C 0 1 N N R 12.160 4.186 10.693 1.686 2.936 -0.212 C15 18Y 26 18Y C25 C25 C 0 1 N N N 12.595 3.796 11.976 2.331 4.197 -0.790 C25 18Y 27 18Y "O1'" "O1'" O 0 1 N N N 13.638 7.156 7.141 2.585 -1.446 0.825 "O1'" 18Y 28 18Y "C1'" "C1'" C 0 1 N N S 12.802 7.807 7.989 2.083 -1.574 -0.507 "C1'" 18Y 29 18Y "C2'" "C2'" C 0 1 N N N 13.307 9.080 8.477 3.013 -2.483 -1.316 "C2'" 18Y 30 18Y "O3'" "O3'" O 0 1 N N N 14.788 8.586 10.024 4.042 -4.673 -1.328 "O3'" 18Y 31 18Y "C3'" "C3'" C 0 1 N N R 14.702 9.144 8.826 3.118 -3.843 -0.620 "C3'" 18Y 32 18Y "O4'" "O4'" O 0 1 N N N 15.653 9.324 6.726 3.646 -4.889 1.497 "O4'" 18Y 33 18Y "C4'" "C4'" C 0 1 N N S 15.797 8.346 7.813 3.614 -3.633 0.815 "C4'" 18Y 34 18Y "C5'" "C5'" C 0 1 N N S 14.984 7.215 7.513 2.660 -2.681 1.541 "C5'" 18Y 35 18Y "C6'" "C6'" C 0 1 N N N 15.874 6.461 6.317 1.269 -3.312 1.618 "C6'" 18Y 36 18Y C20 C20 C 0 1 Y N N 7.490 6.664 5.440 -4.077 -1.472 -0.795 C20 18Y 37 18Y C21 C21 C 0 1 Y N N 6.863 5.595 4.884 -5.068 -1.027 0.104 C21 18Y 38 18Y C18 C18 C 0 1 N N N 10.424 1.104 7.362 -1.505 2.822 3.315 C18 18Y 39 18Y C22 C22 C 0 1 Y N N 9.129 5.120 6.611 -2.440 -0.052 0.287 C22 18Y 40 18Y C23 C23 C 0 1 Y N N 8.439 4.074 6.026 -3.444 0.391 1.180 C23 18Y 41 18Y C24 C24 C 0 1 N N N 5.736 2.569 5.373 -6.475 1.459 1.543 C24 18Y 42 18Y O26 O26 O 0 1 N N N 11.426 3.420 12.669 1.341 4.967 -1.475 O26 18Y 43 18Y C27 C27 C 0 1 N N N 11.604 3.489 14.049 1.880 5.960 -2.350 C27 18Y 44 18Y C28 C28 C 0 1 N N N 14.685 2.361 12.067 3.848 5.944 -0.163 C28 18Y 45 18Y C17 C17 C 0 1 N N N 9.861 5.210 10.776 -0.378 2.366 -1.584 C17 18Y 46 18Y O16 O16 O 0 1 N N N 13.332 2.634 12.084 2.891 4.975 0.270 O16 18Y 47 18Y H3A H3A H 0 1 N N N 5.073 7.326 2.900 -6.768 -1.264 -2.086 H3A 18Y 48 18Y H3B H3B H 0 1 N N N 4.194 7.033 4.439 -7.792 -2.529 -1.364 H3B 18Y 49 18Y H5 H5 H 0 1 N N N 8.403 1.910 5.819 -3.868 1.678 2.858 H5 18Y 50 18Y "H81'" "H81'" H 0 0 N N N 18.969 9.227 8.780 7.109 -3.333 0.681 "H81'" 18Y 51 18Y "H82'" "H82'" H 0 0 N N N 18.290 9.443 7.131 6.223 -4.615 1.541 "H82'" 18Y 52 18Y "H83'" "H83'" H 0 0 N N N 17.674 10.438 8.493 6.147 -4.518 -0.235 "H83'" 18Y 53 18Y H2B H2B H 0 1 N N N 5.936 8.929 3.641 -5.723 -3.918 -0.984 H2B 18Y 54 18Y H2A H2A H 0 1 N N N 4.918 8.728 5.108 -6.015 -3.580 -2.712 H2A 18Y 55 18Y H4A H4A H 0 1 N N N 4.859 5.102 4.348 -7.171 -0.730 0.262 H4A 18Y 56 18Y H4B H4B H 0 1 N N N 5.943 5.469 2.964 -6.611 -2.340 0.758 H4B 18Y 57 18Y H9 H9 H 0 1 N N N 8.766 8.315 6.582 -1.342 -2.213 -1.270 H9 18Y 58 18Y H11 H11 H 0 1 N N N 12.468 2.566 8.007 0.762 2.130 2.579 H11 18Y 59 18Y H12 H12 H 0 1 N N N 13.412 4.786 7.765 1.954 0.207 1.534 H12 18Y 60 18Y H1 H1 H 0 1 N N N 11.569 6.239 12.298 1.868 2.730 -2.947 H1 18Y 61 18Y H16 H16 H 0 1 N N N 13.096 4.632 12.486 3.119 3.915 -1.489 H16 18Y 62 18Y "H1'" "H1'" H 0 1 N N N 11.858 8.011 7.462 1.084 -2.010 -0.479 "H1'" 18Y 63 18Y "H2'" "H2'" H 0 1 N N N 13.127 9.830 7.693 2.609 -2.617 -2.319 "H2'" 18Y 64 18Y H2 H2 H 0 1 N N N 12.729 9.343 9.375 4.002 -2.028 -1.378 H2 18Y 65 18Y HO3 HO3 H 0 1 N N N 15.589 8.079 10.081 3.793 -4.841 -2.247 HO3 18Y 66 18Y "H3'" "H3'" H 0 1 N N N 15.021 10.196 8.857 2.138 -4.320 -0.602 "H3'" 18Y 67 18Y "H4'" "H4'" H 0 1 N N N 16.190 10.085 6.911 3.949 -4.830 2.413 "H4'" 18Y 68 18Y "H5'" "H5'" H 0 1 N N N 15.090 6.537 8.373 3.031 -2.494 2.549 "H5'" 18Y 69 18Y "H61'" "H61'" H 0 0 N N N 16.942 6.490 6.580 0.898 -3.499 0.610 "H61'" 18Y 70 18Y "H62'" "H62'" H 0 0 N N N 15.548 5.415 6.222 1.327 -4.253 2.165 "H62'" 18Y 71 18Y "H63'" "H63'" H 0 0 N N N 15.718 6.982 5.361 0.590 -2.633 2.135 "H63'" 18Y 72 18Y H61A H61A H 0 0 N N N 11.148 0.804 6.590 -1.184 2.306 4.220 H61A 18Y 73 18Y H63A H63A H 0 0 N N N 10.895 1.032 8.354 -0.703 3.468 2.960 H63A 18Y 74 18Y H62A H62A H 0 0 N N N 9.549 0.438 7.323 -2.387 3.424 3.534 H62A 18Y 75 18Y H111 H111 H 0 0 N N N 5.271 1.736 4.825 -7.207 1.690 2.318 H111 18Y 76 18Y H112 H112 H 0 0 N N N 6.257 2.179 6.260 -5.805 2.307 1.411 H112 18Y 77 18Y H113 H113 H 0 0 N N N 4.958 3.280 5.688 -6.992 1.254 0.605 H113 18Y 78 18Y H62B H62B H 0 0 N N N 10.674 3.190 14.555 1.119 6.261 -3.070 H62B 18Y 79 18Y H63B H63B H 0 0 N N N 12.418 2.812 14.348 2.191 6.827 -1.768 H63B 18Y 80 18Y H61B H61B H 0 0 N N N 11.861 4.520 14.334 2.740 5.550 -2.879 H61B 18Y 81 18Y H63C H63C H 0 0 N N N 14.843 1.279 12.187 4.354 6.368 0.705 H63C 18Y 82 18Y H61C H61C H 0 0 N N N 15.113 2.690 11.109 4.580 5.466 -0.813 H61C 18Y 83 18Y H62C H62C H 0 0 N N N 15.177 2.897 12.892 3.339 6.738 -0.710 H62C 18Y 84 18Y H171 H171 H 0 0 N N N 9.707 4.927 11.828 -0.948 2.463 -0.660 H171 18Y 85 18Y H172 H172 H 0 0 N N N 9.326 6.148 10.567 -0.376 3.320 -2.112 H172 18Y 86 18Y H3 H3 H 0 1 N N N 9.475 4.414 10.122 -0.836 1.603 -2.215 H3 18Y 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 18Y C3 C4 SING N N 1 18Y C3 C2 SING N N 2 18Y C4 C21 SING N N 3 18Y C2 C1 SING N N 4 18Y O10 C19 SING N N 5 18Y O10 C24 SING N N 6 18Y C21 C19 DOUB Y N 7 18Y C21 C20 SING Y N 8 18Y C19 C23 SING Y N 9 18Y C1 C20 SING N N 10 18Y C1 O1 DOUB N N 11 18Y C20 C9 DOUB Y N 12 18Y C23 C5 DOUB Y N 13 18Y C23 C22 SING Y N 14 18Y C5 C6 SING Y N 15 18Y C9 C22 SING Y N 16 18Y C9 O9 SING N N 17 18Y "C6'" "C5'" SING N N 18 18Y C22 C8 DOUB Y N 19 18Y "O4'" "C4'" SING N N 20 18Y C6 C18 SING N N 21 18Y C6 C7 DOUB Y N 22 18Y "O1'" "C5'" SING N N 23 18Y "O1'" "C1'" SING N N 24 18Y C8 C7 SING Y N 25 18Y C8 O8 SING N N 26 18Y "C5'" "C4'" SING N N 27 18Y C7 C11 SING N N 28 18Y "C4'" "C7'" SING N N 29 18Y "C4'" "C3'" SING N N 30 18Y "C1'" "C2'" SING N N 31 18Y "C1'" O13 SING N N 32 18Y O8 C13 SING N N 33 18Y "C8'" "C7'" SING N N 34 18Y C11 C12 SING N N 35 18Y C11 O11 SING N N 36 18Y "C2'" "C3'" SING N N 37 18Y "C7'" "O7'" DOUB N N 38 18Y C12 C13 SING N N 39 18Y C12 O12 SING N N 40 18Y "C3'" "O3'" SING N N 41 18Y C13 O13 SING N N 42 18Y C13 C14 SING N N 43 18Y O12 C15 SING N N 44 18Y O11 C15 SING N N 45 18Y C14 C15 SING N N 46 18Y C14 C17 SING N N 47 18Y C14 O14 SING N N 48 18Y C15 C25 SING N N 49 18Y C25 O16 SING N N 50 18Y C25 O26 SING N N 51 18Y C28 O16 SING N N 52 18Y O26 C27 SING N N 53 18Y C3 H3A SING N N 54 18Y C3 H3B SING N N 55 18Y C5 H5 SING N N 56 18Y "C8'" "H81'" SING N N 57 18Y "C8'" "H82'" SING N N 58 18Y "C8'" "H83'" SING N N 59 18Y C2 H2B SING N N 60 18Y C2 H2A SING N N 61 18Y C4 H4A SING N N 62 18Y C4 H4B SING N N 63 18Y O9 H9 SING N N 64 18Y C11 H11 SING N N 65 18Y C12 H12 SING N N 66 18Y O14 H1 SING N N 67 18Y C25 H16 SING N N 68 18Y "C1'" "H1'" SING N N 69 18Y "C2'" "H2'" SING N N 70 18Y "C2'" H2 SING N N 71 18Y "O3'" HO3 SING N N 72 18Y "C3'" "H3'" SING N N 73 18Y "O4'" "H4'" SING N N 74 18Y "C5'" "H5'" SING N N 75 18Y "C6'" "H61'" SING N N 76 18Y "C6'" "H62'" SING N N 77 18Y "C6'" "H63'" SING N N 78 18Y C18 H61A SING N N 79 18Y C18 H63A SING N N 80 18Y C18 H62A SING N N 81 18Y C24 H111 SING N N 82 18Y C24 H112 SING N N 83 18Y C24 H113 SING N N 84 18Y C27 H62B SING N N 85 18Y C27 H63B SING N N 86 18Y C27 H61B SING N N 87 18Y C28 H63C SING N N 88 18Y C28 H61C SING N N 89 18Y C28 H62C SING N N 90 18Y C17 H171 SING N N 91 18Y C17 H172 SING N N 92 18Y C17 H3 SING N N 93 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 18Y SMILES ACDLabs 12.01 "O=C(C)C1(O)C(O)CC(OC1C)OC57Oc2c(c(cc4c2c(O)c3C(=O)CCCc3c4OC)C)C6OC(OC56)(C(OC)OC)C7(O)C" 18Y InChI InChI 1.03 "InChI=1S/C33H40O14/c1-13-11-17-23(24(37)22-16(25(17)40-5)9-8-10-18(22)35)26-21(13)27-28-32(45-26,30(4,38)33(46-27,47-28)29(41-6)42-7)44-20-12-19(36)31(39,14(2)34)15(3)43-20/h11,15,19-20,27-29,36-39H,8-10,12H2,1-7H3/t15-,19+,20-,27-,28-,30-,31+,32+,33-/m0/s1" 18Y InChIKey InChI 1.03 VSONDVKNAFWAKH-UEXNXLFMSA-N 18Y SMILES_CANONICAL CACTVS 3.370 "COC(OC)[C@]12O[C@@H]3[C@H](O1)[C@@](O[C@H]4C[C@@H](O)[C@](O)([C@H](C)O4)C(C)=O)(Oc5c3c(C)cc6c(OC)c7CCCC(=O)c7c(O)c56)[C@]2(C)O" 18Y SMILES CACTVS 3.370 "COC(OC)[C]12O[CH]3[CH](O1)[C](O[CH]4C[CH](O)[C](O)([CH](C)O4)C(C)=O)(Oc5c3c(C)cc6c(OC)c7CCCC(=O)c7c(O)c56)[C]2(C)O" 18Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc2c(c(c3c(c2OC)CCCC3=O)O)c4c1[C@H]5[C@H]6[C@@](O4)([C@]([C@@](O5)(O6)C(OC)OC)(C)O)O[C@H]7C[C@H]([C@]([C@@H](O7)C)(C(=O)C)O)O" 18Y SMILES "OpenEye OEToolkits" 1.7.6 "Cc1cc2c(c(c3c(c2OC)CCCC3=O)O)c4c1C5C6C(O4)(C(C(O5)(O6)C(OC)OC)(C)O)OC7CC(C(C(O7)C)(C(=O)C)O)O" # _pdbx_chem_comp_identifier.comp_id 18Y _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(1S,2R,3aS,4S,13aS)-2-(dimethoxymethyl)-1,12-dihydroxy-7-methoxy-1,5-dimethyl-11-oxo-1,2,3a,4,8,9,10,11-octahydro-13aH-2,4-epoxyfuro[3,2-b]naphtho[2,3-h]chromen-13a-yl 4-C-acetyl-2,6-dideoxy-alpha-L-xylo-hexopyranoside" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 18Y "Create component" 2012-11-08 RCSB 18Y "Modify name" 2012-11-08 RCSB 18Y "Initial release" 2013-10-23 RCSB 18Y "Modify linking type" 2021-03-03 RCSB 18Y "Modify synonyms" 2021-03-03 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 18Y _pdbx_chem_comp_synonyms.name "(1S,2R,3aS,4S,13aS)-2-(dimethoxymethyl)-1,12-dihydroxy-7-methoxy-1,5-dimethyl-11-oxo-1,2,3a,4,8,9,10,11-octahydro-13aH-2,4-epoxyfuro[3,2-b]naphtho[2,3-h]chromen-13a-yl 4-C-acetyl-2,6-dideoxy-alpha-L-xylo-hexopyranoside" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##