data_1DM # _chem_comp.id 1DM _chem_comp.name "N-(2-MORPHOLIN-4-YL-1-MORPHOLIN-4-YLMETHYL-ETHYL)-3-NITRO-5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-2-YLOXY)-BENZAMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H36 N4 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-07-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 556.563 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1DM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PZI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1DM C21 C21 C 0 1 N N N 6.036 6.955 39.794 5.148 2.856 2.068 C21 1DM 1 1DM C22 C22 C 0 1 N N N 5.964 7.667 38.447 6.275 3.786 1.618 C22 1DM 2 1DM O22 O22 O 0 1 N N N 4.607 7.692 37.997 5.860 4.526 0.470 O22 1DM 3 1DM C23 C23 C 0 1 N N N 4.173 6.348 37.787 5.625 3.585 -0.577 C23 1DM 4 1DM C24 C24 C 0 1 N N N 4.184 5.608 39.116 4.481 2.649 -0.183 C24 1DM 5 1DM N20 N20 N 0 1 N N N 5.548 5.581 39.657 4.864 1.880 1.008 N20 1DM 6 1DM C20 C20 C 0 1 N N N 5.505 4.966 40.984 3.671 1.133 1.430 C20 1DM 7 1DM C19 C19 C 0 1 N N N 6.169 3.577 41.050 3.264 0.156 0.326 C19 1DM 8 1DM C30 C30 C 0 1 N N N 5.142 2.532 41.518 4.361 -0.895 0.145 C30 1DM 9 1DM N19 N19 N 0 1 N N N 5.805 1.405 42.194 3.919 -1.902 -0.829 N19 1DM 10 1DM C25 C25 C 0 1 N N N 6.416 1.866 43.453 5.091 -2.733 -1.139 C25 1DM 11 1DM C26 C26 C 0 1 N N N 7.020 0.685 44.212 4.749 -3.695 -2.277 C26 1DM 12 1DM O23 O23 O 0 1 N N N 5.975 -0.256 44.503 4.440 -2.954 -3.458 O23 1DM 13 1DM C27 C27 C 0 1 N N N 5.431 -0.772 43.278 3.276 -2.178 -3.176 C27 1DM 14 1DM C28 C28 C 0 1 N N N 4.802 0.366 42.471 3.580 -1.177 -2.061 C28 1DM 15 1DM N18 N18 N 0 1 N N N 6.844 3.109 39.808 2.011 -0.506 0.697 N18 1DM 16 1DM C13 C13 C 0 1 N N N 6.318 2.947 38.574 0.835 0.126 0.510 C13 1DM 17 1DM O17 O17 O 0 1 N N N 5.153 3.172 38.236 0.806 1.203 -0.052 O17 1DM 18 1DM C11 C11 C 0 1 Y N N 7.318 2.396 37.533 -0.420 -0.493 0.988 C11 1DM 19 1DM C12 C12 C 0 1 Y N N 6.838 1.851 36.346 -1.639 0.158 0.795 C12 1DM 20 1DM C10 C10 C 0 1 Y N N 8.689 2.407 37.782 -0.390 -1.730 1.633 C10 1DM 21 1DM C9 C9 C 0 1 Y N N 9.577 1.887 36.844 -1.563 -2.305 2.077 C9 1DM 22 1DM N14 N14 N 1 1 N N N 10.894 1.915 37.071 -1.530 -3.617 2.761 N14 1DM 23 1DM O15 O15 O -1 1 N N N 11.320 2.362 38.137 -0.467 -4.188 2.930 O15 1DM 24 1DM O16 O16 O 0 1 N N N 11.688 1.516 36.218 -2.564 -4.126 3.154 O16 1DM 25 1DM C8 C8 C 0 1 Y N N 9.089 1.360 35.660 -2.770 -1.656 1.890 C8 1DM 26 1DM C7 C7 C 0 1 Y N N 7.720 1.341 35.399 -2.811 -0.427 1.245 C7 1DM 27 1DM O1 O1 O 0 1 N N N 7.246 0.793 34.246 -4.000 0.204 1.059 O1 1DM 28 1DM C1 C1 C 0 1 N N R 7.113 1.640 33.141 -3.732 1.367 0.274 C1 1DM 29 1DM O5 O5 O 0 1 N N N 8.420 2.092 32.765 -3.300 0.972 -1.027 O5 1DM 30 1DM C5 C5 C 0 1 N N R 9.286 1.003 32.342 -4.268 0.061 -1.545 C5 1DM 31 1DM C6 C6 C 0 1 N N N 10.666 1.574 31.954 -3.753 -0.537 -2.855 C6 1DM 32 1DM O6 O6 O 0 1 N N N 11.212 2.243 33.084 -2.589 -1.324 -2.595 O6 1DM 33 1DM C4 C4 C 0 1 N N R 8.700 0.144 31.217 -5.584 0.798 -1.804 C4 1DM 34 1DM O4 O4 O 0 1 N N N 8.644 0.859 29.979 -5.365 1.867 -2.726 O4 1DM 35 1DM C3 C3 C 0 1 N N S 7.293 -0.340 31.584 -6.110 1.362 -0.479 C3 1DM 36 1DM O3 O3 O 0 1 N N N 6.706 -0.999 30.466 -7.258 2.178 -0.724 O3 1DM 37 1DM C2 C2 C 0 1 N N R 6.418 0.837 32.023 -5.006 2.209 0.164 C2 1DM 38 1DM O2 O2 O 0 1 N N N 5.178 0.304 32.491 -5.418 2.625 1.467 O2 1DM 39 1DM H211 1H21 H 0 0 N N N 7.059 6.994 40.234 4.252 3.443 2.270 H211 1DM 40 1DM H212 2H21 H 0 0 N N N 5.494 7.514 40.592 5.451 2.331 2.974 H212 1DM 41 1DM H221 1H22 H 0 0 N N N 6.416 8.685 38.482 6.520 4.476 2.425 H221 1DM 42 1DM H222 2H22 H 0 0 N N N 6.650 7.215 37.693 7.156 3.194 1.368 H222 1DM 43 1DM H231 1H23 H 0 0 N N N 3.180 6.297 37.281 5.360 4.117 -1.490 H231 1DM 44 1DM H232 2H23 H 0 0 N N N 4.773 5.825 37.006 6.529 3.000 -0.748 H232 1DM 45 1DM H241 1H24 H 0 0 N N N 3.453 6.036 39.841 4.271 1.966 -1.005 H241 1DM 46 1DM H242 2H24 H 0 0 N N N 3.746 4.586 39.031 3.590 3.238 0.036 H242 1DM 47 1DM H201 1H20 H 0 0 N N N 5.946 5.648 41.747 2.854 1.830 1.618 H201 1DM 48 1DM H202 2H20 H 0 0 N N N 4.456 4.917 41.360 3.893 0.579 2.342 H202 1DM 49 1DM H19 H19 H 0 1 N N N 6.998 3.695 41.785 3.125 0.700 -0.608 H19 1DM 50 1DM H301 1H30 H 0 0 N N N 4.353 2.989 42.159 5.270 -0.414 -0.217 H301 1DM 51 1DM H302 2H30 H 0 0 N N N 4.496 2.184 40.677 4.562 -1.379 1.101 H302 1DM 52 1DM H251 1H25 H 0 0 N N N 7.162 2.675 43.281 5.920 -2.093 -1.440 H251 1DM 53 1DM H252 2H25 H 0 0 N N N 5.693 2.438 44.080 5.375 -3.303 -0.254 H252 1DM 54 1DM H261 1H26 H 0 0 N N N 7.874 0.219 43.667 5.601 -4.346 -2.470 H261 1DM 55 1DM H262 2H26 H 0 0 N N N 7.574 1.003 45.125 3.888 -4.300 -1.994 H262 1DM 56 1DM H271 1H27 H 0 0 N N N 6.189 -1.335 42.686 2.973 -1.639 -4.074 H271 1DM 57 1DM H272 2H27 H 0 0 N N N 4.713 -1.606 43.456 2.468 -2.838 -2.860 H272 1DM 58 1DM H281 1H28 H 0 0 N N N 3.897 0.782 42.972 2.704 -0.552 -1.885 H281 1DM 59 1DM H282 2H28 H 0 0 N N N 4.315 -0.003 41.538 4.420 -0.549 -2.356 H282 1DM 60 1DM H18 H18 H 0 1 N N N 7.832 2.857 39.801 2.027 -1.398 1.077 H18 1DM 61 1DM H12 H12 H 0 1 N N N 5.752 1.823 36.154 -1.669 1.116 0.296 H12 1DM 62 1DM H10 H10 H 0 1 N N N 9.073 2.829 38.725 0.551 -2.238 1.784 H10 1DM 63 1DM H8 H8 H 0 1 N N N 9.796 0.952 34.918 -3.685 -2.110 2.240 H8 1DM 64 1DM H1 H1 H 0 1 N N N 6.494 2.541 33.360 -2.949 1.955 0.753 H1 1DM 65 1DM H5 H5 H 0 1 N N N 9.390 0.307 33.207 -4.436 -0.738 -0.823 H5 1DM 66 1DM H61 1H6 H 0 1 N N N 11.351 0.795 31.545 -3.501 0.267 -3.547 H61 1DM 67 1DM H62 2H6 H 0 1 N N N 10.620 2.226 31.051 -4.526 -1.166 -3.296 H62 1DM 68 1DM HO6 HO6 H 0 1 N N N 12.061 2.594 32.845 -2.298 -1.682 -3.445 HO6 1DM 69 1DM H4 H4 H 0 1 N N N 9.376 -0.732 31.089 -6.314 0.102 -2.219 H4 1DM 70 1DM HO4 HO4 H 0 1 N N N 8.280 0.326 29.281 -6.217 2.305 -2.855 HO4 1DM 71 1DM H3 H3 H 0 1 N N N 7.368 -1.057 32.434 -6.378 0.543 0.188 H3 1DM 72 1DM HO3 HO3 H 0 1 N N N 5.833 -1.299 30.693 -7.545 2.520 0.133 HO3 1DM 73 1DM H2 H2 H 0 1 N N N 6.245 1.530 31.167 -4.811 3.085 -0.454 H2 1DM 74 1DM HO2 HO2 H 0 1 N N N 4.749 -0.190 31.802 -4.692 3.147 1.836 HO2 1DM 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1DM C21 C22 SING N N 1 1DM C21 N20 SING N N 2 1DM C21 H211 SING N N 3 1DM C21 H212 SING N N 4 1DM C22 O22 SING N N 5 1DM C22 H221 SING N N 6 1DM C22 H222 SING N N 7 1DM O22 C23 SING N N 8 1DM C23 C24 SING N N 9 1DM C23 H231 SING N N 10 1DM C23 H232 SING N N 11 1DM C24 N20 SING N N 12 1DM C24 H241 SING N N 13 1DM C24 H242 SING N N 14 1DM N20 C20 SING N N 15 1DM C20 C19 SING N N 16 1DM C20 H201 SING N N 17 1DM C20 H202 SING N N 18 1DM C19 C30 SING N N 19 1DM C19 N18 SING N N 20 1DM C19 H19 SING N N 21 1DM C30 N19 SING N N 22 1DM C30 H301 SING N N 23 1DM C30 H302 SING N N 24 1DM N19 C25 SING N N 25 1DM N19 C28 SING N N 26 1DM C25 C26 SING N N 27 1DM C25 H251 SING N N 28 1DM C25 H252 SING N N 29 1DM C26 O23 SING N N 30 1DM C26 H261 SING N N 31 1DM C26 H262 SING N N 32 1DM O23 C27 SING N N 33 1DM C27 C28 SING N N 34 1DM C27 H271 SING N N 35 1DM C27 H272 SING N N 36 1DM C28 H281 SING N N 37 1DM C28 H282 SING N N 38 1DM N18 C13 SING N N 39 1DM N18 H18 SING N N 40 1DM C13 O17 DOUB N N 41 1DM C13 C11 SING N N 42 1DM C11 C12 DOUB Y N 43 1DM C11 C10 SING Y N 44 1DM C12 C7 SING Y N 45 1DM C12 H12 SING N N 46 1DM C10 C9 DOUB Y N 47 1DM C10 H10 SING N N 48 1DM C9 N14 SING N N 49 1DM C9 C8 SING Y N 50 1DM N14 O15 SING N N 51 1DM N14 O16 DOUB N N 52 1DM C8 C7 DOUB Y N 53 1DM C8 H8 SING N N 54 1DM C7 O1 SING N N 55 1DM O1 C1 SING N N 56 1DM C1 O5 SING N N 57 1DM C1 C2 SING N N 58 1DM C1 H1 SING N N 59 1DM O5 C5 SING N N 60 1DM C5 C6 SING N N 61 1DM C5 C4 SING N N 62 1DM C5 H5 SING N N 63 1DM C6 O6 SING N N 64 1DM C6 H61 SING N N 65 1DM C6 H62 SING N N 66 1DM O6 HO6 SING N N 67 1DM C4 O4 SING N N 68 1DM C4 C3 SING N N 69 1DM C4 H4 SING N N 70 1DM O4 HO4 SING N N 71 1DM C3 O3 SING N N 72 1DM C3 C2 SING N N 73 1DM C3 H3 SING N N 74 1DM O3 HO3 SING N N 75 1DM C2 O2 SING N N 76 1DM C2 H2 SING N N 77 1DM O2 HO2 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1DM SMILES ACDLabs 10.04 "[O-][N+](=O)c4cc(OC1OC(C(O)C(O)C1O)CO)cc(C(=O)NC(CN2CCOCC2)CN3CCOCC3)c4" 1DM SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](Oc2cc(cc(c2)[N+]([O-])=O)C(=O)NC(CN3CCOCC3)CN4CCOCC4)[C@H](O)[C@@H](O)[C@H]1O" 1DM SMILES CACTVS 3.341 "OC[CH]1O[CH](Oc2cc(cc(c2)[N+]([O-])=O)C(=O)NC(CN3CCOCC3)CN4CCOCC4)[CH](O)[CH](O)[CH]1O" 1DM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(cc(cc1[N+](=O)[O-])O[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)C(=O)NC(CN3CCOCC3)CN4CCOCC4" 1DM SMILES "OpenEye OEToolkits" 1.5.0 "c1c(cc(cc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)O)C(=O)NC(CN3CCOCC3)CN4CCOCC4" 1DM InChI InChI 1.03 "InChI=1S/C24H36N4O11/c29-14-19-20(30)21(31)22(32)24(39-19)38-18-10-15(9-17(11-18)28(34)35)23(33)25-16(12-26-1-5-36-6-2-26)13-27-3-7-37-8-4-27/h9-11,16,19-22,24,29-32H,1-8,12-14H2,(H,25,33)/t19-,20+,21+,22-,24+/m1/s1" 1DM InChIKey InChI 1.03 MCMWCTMAKPQTPI-WGNYYXNJSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1DM "SYSTEMATIC NAME" ACDLabs 10.04 "3-(alpha-D-galactopyranosyloxy)-N-[2-morpholin-4-yl-1-(morpholin-4-ylmethyl)ethyl]-5-nitrobenzamide" 1DM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[1,3-di(morpholin-4-yl)propan-2-yl]-3-nitro-5-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1DM "Create component" 2003-07-17 RCSB 1DM "Modify descriptor" 2011-06-04 RCSB #