data_1E8 # _chem_comp.id 1E8 _chem_comp.name "1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Imbruvica; PCI-32765" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-18 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.497 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1E8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4IFG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1E8 N1 N1 N 0 1 Y N N N N N -11.897 -20.064 96.294 0.833 4.451 -0.243 N1 1E8 1 1E8 C2 C2 C 0 1 Y N N N N N -10.699 -19.491 95.818 2.098 4.217 -0.544 C2 1E8 2 1E8 N3 N3 N 0 1 Y N N N N N -10.657 -18.098 95.668 2.593 3.003 -0.638 N3 1E8 3 1E8 C4 C4 C 0 1 Y N N N N N -11.759 -17.374 95.976 1.823 1.936 -0.428 C4 1E8 4 1E8 C5 C5 C 0 1 Y N N N N N -12.900 -17.940 96.428 0.468 2.136 -0.104 C5 1E8 5 1E8 C6 C6 C 0 1 Y N N N N N -12.952 -19.285 96.573 -0.014 3.452 -0.016 C6 1E8 6 1E8 CAA CAA C 0 1 N N N N N N -6.523 -13.794 91.560 8.341 -2.305 1.251 CAA 1E8 7 1E8 NAB NAB N 0 1 N N N N N N -14.074 -19.850 97.014 -1.336 3.702 0.299 NAB 1E8 8 1E8 OAC OAC O 0 1 N N N N N N -8.618 -15.571 92.318 6.032 -0.963 1.902 OAC 1E8 9 1E8 CAD CAD C 0 1 N N N N N N -7.689 -13.348 92.452 7.286 -2.278 0.442 CAD 1E8 10 1E8 CAE CAE C 0 1 Y N N N N N -22.463 -17.717 97.573 -7.739 -2.398 -1.351 CAE 1E8 11 1E8 CAF CAF C 0 1 Y N N N N N -22.095 -16.373 97.467 -8.320 -1.908 -0.196 CAF 1E8 12 1E8 CAG CAG C 0 1 Y N N N N N -21.580 -18.641 98.146 -6.392 -2.195 -1.590 CAG 1E8 13 1E8 CAI CAI C 0 1 Y N N N N N -20.850 -15.954 97.933 -7.556 -1.216 0.723 CAI 1E8 14 1E8 CAJ CAJ C 0 1 Y N N N N N -20.327 -18.221 98.609 -5.625 -1.498 -0.676 CAJ 1E8 15 1E8 CAK CAK C 0 1 Y N N N N N -17.329 -16.075 97.005 -3.875 0.855 0.059 CAK 1E8 16 1E8 CAL CAL C 0 1 Y N N N N N -16.486 -17.144 98.975 -3.128 -0.694 1.743 CAL 1E8 17 1E8 CAM CAM C 0 1 Y N N N N N -16.058 -16.184 96.406 -2.566 1.138 -0.267 CAM 1E8 18 1E8 CAN CAN C 0 1 Y N N N N N -15.227 -17.249 98.380 -1.816 -0.412 1.425 CAN 1E8 19 1E8 CAO CAO C 0 1 N N N N N N -9.838 -12.758 95.607 4.487 -1.628 -2.301 CAO 1E8 20 1E8 CAP CAP C 0 1 N N N N N N -10.948 -13.725 96.115 3.146 -0.969 -1.971 CAP 1E8 21 1E8 CAQ CAQ C 0 1 N N N N N N -9.867 -12.668 94.078 4.930 -2.494 -1.118 CAQ 1E8 22 1E8 CAR CAR C 0 1 N N N N N N -10.834 -15.004 93.921 3.737 -0.914 0.455 CAR 1E8 23 1E8 NAU NAU N 0 1 Y N N N N N -13.092 -15.785 96.278 0.835 -0.071 -0.146 NAU 1E8 24 1E8 OAV OAV O 0 1 N N N N N N -18.750 -16.453 98.948 -5.451 -0.330 1.389 OAV 1E8 25 1E8 CAW CAW C 0 1 N N N N N N -8.737 -14.431 92.770 6.054 -1.593 0.862 CAW 1E8 26 1E8 CAY CAY C 0 1 Y N N N N N -19.958 -16.877 98.481 -6.205 -1.011 0.486 CAY 1E8 27 1E8 CAZ CAZ C 0 1 Y N N N N N -17.551 -16.568 98.285 -4.160 -0.058 1.066 CAZ 1E8 28 1E8 CBA CBA C 0 1 Y N N N N N -15.000 -16.808 97.082 -1.526 0.505 0.415 CBA 1E8 29 1E8 CBB CBB C 0 1 Y N N N N N -13.744 -16.897 96.595 -0.118 0.806 0.066 CBB 1E8 30 1E8 CBE CBE C 0 1 N N R N N N -10.865 -15.130 95.445 3.307 -0.066 -0.746 CBE 1E8 31 1E8 NBF NBF N 0 1 Y N N N N N -11.947 -16.057 95.909 2.030 0.589 -0.450 NBF 1E8 32 1E8 NBG NBG N 0 1 N N N N N N -9.780 -14.036 93.526 4.948 -1.664 0.095 NBG 1E8 33 1E8 H2 H2 H 0 1 N N N N N N -9.843 -20.105 95.577 2.752 5.058 -0.720 H2 1E8 34 1E8 HAA HAA H 0 1 N N N N N N -6.477 -14.811 91.199 8.293 -1.823 2.217 HAA 1E8 35 1E8 HAAA HAAA H 0 0 N N N N N N -5.748 -13.091 91.293 9.245 -2.807 0.943 HAAA 1E8 36 1E8 HNAB HNAB H 0 0 N N N N N N -13.948 -20.840 97.074 -1.650 4.616 0.380 HNAB 1E8 37 1E8 HNAA HNAA H 0 0 N N N N N N -14.296 -19.487 97.919 -1.949 2.964 0.439 HNAA 1E8 38 1E8 HAD HAD H 0 1 N N N N N N -7.770 -12.340 92.832 7.334 -2.759 -0.524 HAD 1E8 39 1E8 HAE HAE H 0 1 N N N N N N -23.428 -18.043 97.213 -8.337 -2.943 -2.066 HAE 1E8 40 1E8 HAF HAF H 0 1 N N N N N N -22.775 -15.660 97.024 -9.373 -2.068 -0.012 HAF 1E8 41 1E8 HAG HAG H 0 1 N N N N N N -21.866 -19.679 98.231 -5.939 -2.582 -2.491 HAG 1E8 42 1E8 HAI HAI H 0 1 N N N N N N -20.575 -14.912 97.870 -8.011 -0.833 1.625 HAI 1E8 43 1E8 HAJ HAJ H 0 1 N N N N N N -19.650 -18.930 99.062 -4.573 -1.340 -0.863 HAJ 1E8 44 1E8 HAK HAK H 0 1 N N N N N N -18.137 -15.604 96.465 -4.680 1.349 -0.465 HAK 1E8 45 1E8 HAL HAL H 0 1 N N N N N N -16.636 -17.513 99.979 -3.352 -1.403 2.525 HAL 1E8 46 1E8 HAM HAM H 0 1 N N N N N N -15.897 -15.783 95.416 -2.345 1.848 -1.050 HAM 1E8 47 1E8 HAN HAN H 0 1 N N N N N N -14.412 -17.682 98.941 -1.013 -0.900 1.958 HAN 1E8 48 1E8 HAO HAO H 0 1 N N N N N N -8.855 -13.133 95.929 4.377 -2.252 -3.188 HAO 1E8 49 1E8 HAOA HAOA H 0 0 N N N N N N -10.006 -11.758 96.032 5.234 -0.857 -2.489 HAOA 1E8 50 1E8 HAP HAP H 0 1 N N N N N N -10.840 -13.846 97.203 2.816 -0.371 -2.821 HAP 1E8 51 1E8 HAPA HAPA H 0 0 N N N N N N -11.930 -13.284 95.890 2.405 -1.739 -1.760 HAPA 1E8 52 1E8 HAQ HAQ H 0 1 N N N N N N -10.805 -12.195 93.752 4.230 -3.319 -0.986 HAQ 1E8 53 1E8 HAQA HAQA H 0 0 N N N N N N -9.013 -12.071 93.725 5.929 -2.888 -1.308 HAQA 1E8 54 1E8 HAR HAR H 0 1 N N N N N N -11.811 -14.649 93.562 3.949 -0.264 1.304 HAR 1E8 55 1E8 HARA HARA H 0 0 N N N N N N -10.615 -15.986 93.476 2.939 -1.609 0.716 HARA 1E8 56 1E8 HBE HBE H 0 1 N N N N N N -9.904 -15.569 95.751 4.066 0.690 -0.948 HBE 1E8 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1E8 C2 N1 DOUB Y N 1 1E8 N1 C6 SING Y N 2 1E8 N3 C2 SING Y N 3 1E8 C2 H2 SING N N 4 1E8 N3 C4 DOUB Y N 5 1E8 NBF C4 SING Y N 6 1E8 C4 C5 SING Y N 7 1E8 C5 C6 DOUB Y N 8 1E8 C5 CBB SING Y N 9 1E8 C6 NAB SING N N 10 1E8 CAA CAD DOUB N N 11 1E8 CAA HAA SING N N 12 1E8 CAA HAAA SING N N 13 1E8 NAB HNAB SING N N 14 1E8 NAB HNAA SING N N 15 1E8 OAC CAW DOUB N N 16 1E8 CAD CAW SING N N 17 1E8 CAD HAD SING N N 18 1E8 CAF CAE DOUB Y N 19 1E8 CAE CAG SING Y N 20 1E8 CAE HAE SING N N 21 1E8 CAF CAI SING Y N 22 1E8 CAF HAF SING N N 23 1E8 CAG CAJ DOUB Y N 24 1E8 CAG HAG SING N N 25 1E8 CAI CAY DOUB Y N 26 1E8 CAI HAI SING N N 27 1E8 CAY CAJ SING Y N 28 1E8 CAJ HAJ SING N N 29 1E8 CAM CAK DOUB Y N 30 1E8 CAK CAZ SING Y N 31 1E8 CAK HAK SING N N 32 1E8 CAZ CAL DOUB Y N 33 1E8 CAN CAL SING Y N 34 1E8 CAL HAL SING N N 35 1E8 CAM CBA SING Y N 36 1E8 CAM HAM SING N N 37 1E8 CBA CAN DOUB Y N 38 1E8 CAN HAN SING N N 39 1E8 CAQ CAO SING N N 40 1E8 CAO CAP SING N N 41 1E8 CAO HAO SING N N 42 1E8 CAO HAOA SING N N 43 1E8 CBE CAP SING N N 44 1E8 CAP HAP SING N N 45 1E8 CAP HAPA SING N N 46 1E8 NBG CAQ SING N N 47 1E8 CAQ HAQ SING N N 48 1E8 CAQ HAQA SING N N 49 1E8 NBG CAR SING N N 50 1E8 CAR CBE SING N N 51 1E8 CAR HAR SING N N 52 1E8 CAR HARA SING N N 53 1E8 NBF NAU SING Y N 54 1E8 NAU CBB DOUB Y N 55 1E8 CAZ OAV SING N N 56 1E8 CAY OAV SING N N 57 1E8 CAW NBG SING N N 58 1E8 CBB CBA SING N N 59 1E8 CBE NBF SING N N 60 1E8 CBE HBE SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1E8 SMILES ACDLabs 12.01 "n1c(c2c(nc1)n(nc2c3ccc(cc3)Oc4ccccc4)C5CCCN(C5)C(=O)\C=C)N" 1E8 InChI InChI 1.03 "InChI=1S/C25H24N6O2/c1-2-21(32)30-14-6-7-18(15-30)31-25-22(24(26)27-16-28-25)23(29-31)17-10-12-20(13-11-17)33-19-8-4-3-5-9-19/h2-5,8-13,16,18H,1,6-7,14-15H2,(H2,26,27,28)/t18-/m1/s1" 1E8 InChIKey InChI 1.03 XYFPWWZEPKGCCK-GOSISDBHSA-N 1E8 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(nc(c3ccc(Oc4ccccc4)cc3)c12)[C@@H]5CCCN(C5)C(=O)C=C" 1E8 SMILES CACTVS 3.385 "Nc1ncnc2n(nc(c3ccc(Oc4ccccc4)cc3)c12)[CH]5CCCN(C5)C(=O)C=C" 1E8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C=CC(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N" 1E8 SMILES "OpenEye OEToolkits" 1.7.6 "C=CC(=O)N1CCCC(C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1E8 "SYSTEMATIC NAME" ACDLabs 12.01 "1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one" 1E8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(3R)-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]prop-2-en-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1E8 "Create component" 2012-12-18 RCSB 1E8 "Initial release" 2014-04-16 RCSB 1E8 "Modify value order" 2015-03-04 RCSB 1E8 "Modify name" 2015-03-04 RCSB 1E8 "Modify formula" 2015-03-04 RCSB 1E8 "Modify synonyms" 2015-03-04 RCSB 1E8 "Modify synonyms" 2020-05-26 PDBE 1E8 "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 1E8 Imbruvica ? ? 2 1E8 PCI-32765 ? ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 1E8 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAA _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #