data_1GN # _chem_comp.id 1GN _chem_comp.name 2-amino-2-deoxy-beta-D-galactopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;beta-D-galactosamine; 2-amino-2-deoxy-beta-D-galactose; 2-amino-2-deoxy-D-galactose; 2-amino-2-deoxy-galactose; 2-DEOXY-2-AMINOGALACTOSE ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1GN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3GAL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 1GN beta-D-galactosamine PDB ? 2 1GN 2-amino-2-deoxy-beta-D-galactose PDB ? 3 1GN 2-amino-2-deoxy-D-galactose PDB ? 4 1GN 2-amino-2-deoxy-galactose PDB ? 5 1GN 2-DEOXY-2-AMINOGALACTOSE PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1GN C2 C2 C 0 1 N N R -19.719 -21.104 -7.161 0.332 0.138 1.529 C2 1GN 1 1GN C3 C3 C 0 1 N N R -20.272 -19.768 -6.620 -0.974 -0.570 1.158 C3 1GN 2 1GN C4 C4 C 0 1 N N R -19.117 -18.813 -6.300 -1.356 -0.177 -0.273 C4 1GN 3 1GN O5 O5 O 0 1 N N N -17.752 -19.932 -7.988 0.951 0.321 -0.802 O5 1GN 4 1GN C1 C1 C 0 1 N N R -18.826 -20.816 -8.367 1.388 -0.167 0.465 C1 1GN 5 1GN O1 O1 O 0 1 N Y N -18.283 -22.002 -8.845 2.618 0.467 0.819 O1 1GN 6 1GN N2 N2 N 0 1 N N N -20.792 -22.001 -7.549 0.798 -0.343 2.837 N2 1GN 7 1GN O3 O3 O 0 1 N N N -21.047 -19.978 -5.447 -2.013 -0.176 2.056 O3 1GN 8 1GN O4 O4 O 0 1 N N N -18.344 -19.332 -5.230 -1.677 1.214 -0.317 O4 1GN 9 1GN C5 C5 C 0 1 N N R -18.230 -18.640 -7.529 -0.172 -0.459 -1.201 C5 1GN 10 1GN C6 C6 C 0 1 N N N -17.020 -17.780 -7.243 -0.557 -0.098 -2.638 C6 1GN 11 1GN O6 O6 O 0 1 N N N -16.175 -17.694 -8.379 0.543 -0.367 -3.508 O6 1GN 12 1GN H2 H2 H 0 1 N N N -19.132 -21.602 -6.354 0.162 1.214 1.577 H2 1GN 13 1GN H3 H3 H 0 1 N N N -20.923 -19.319 -7.405 -0.831 -1.649 1.215 H3 1GN 14 1GN H4 H4 H 0 1 N N N -19.538 -17.823 -6.006 -2.218 -0.761 -0.594 H4 1GN 15 1GN H1 H1 H 0 1 N N N -19.444 -20.335 -9.160 1.540 -1.244 0.404 H1 1GN 16 1GN HO1 HO1 H 0 1 N Y N -17.727 -21.822 -9.594 3.255 0.250 0.125 HO1 1GN 17 1GN HN21 HN21 H 0 0 N N N -20.426 -22.883 -7.906 1.657 0.146 3.036 HN21 1GN 18 1GN HN22 HN22 H 0 0 N Y N -21.425 -21.560 -8.216 0.122 -0.032 3.518 HN22 1GN 19 1GN HO3 HO3 H 0 1 N Y N -21.387 -19.155 -5.114 -1.732 -0.442 2.943 HO3 1GN 20 1GN HO4 HO4 H 0 1 N Y N -17.628 -18.740 -5.031 -1.904 1.419 -1.234 HO4 1GN 21 1GN H5 H5 H 0 1 N N N -18.857 -18.143 -8.305 0.084 -1.517 -1.150 H5 1GN 22 1GN H61 H61 H 0 1 N N N -17.312 -16.770 -6.871 -1.417 -0.695 -2.944 H61 1GN 23 1GN H62 H62 H 0 1 N N N -16.465 -18.137 -6.344 -0.812 0.959 -2.691 H62 1GN 24 1GN HO6 HO6 H 0 1 N Y N -15.414 -17.153 -8.199 0.259 -0.127 -4.400 HO6 1GN 25 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1GN C2 C3 SING N N 1 1GN C2 C1 SING N N 2 1GN C2 N2 SING N N 3 1GN C2 H2 SING N N 4 1GN C3 C4 SING N N 5 1GN C3 O3 SING N N 6 1GN C3 H3 SING N N 7 1GN C4 O4 SING N N 8 1GN C4 C5 SING N N 9 1GN C4 H4 SING N N 10 1GN O5 C1 SING N N 11 1GN O5 C5 SING N N 12 1GN C1 O1 SING N N 13 1GN C1 H1 SING N N 14 1GN O1 HO1 SING N N 15 1GN N2 HN21 SING N N 16 1GN N2 HN22 SING N N 17 1GN O3 HO3 SING N N 18 1GN O4 HO4 SING N N 19 1GN C5 C6 SING N N 20 1GN C5 H5 SING N N 21 1GN C6 O6 SING N N 22 1GN C6 H61 SING N N 23 1GN C6 H62 SING N N 24 1GN O6 HO6 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1GN SMILES ACDLabs 10.04 "OC1C(O)C(OC(O)C1N)CO" 1GN SMILES_CANONICAL CACTVS 3.341 "N[C@H]1[C@H](O)O[C@H](CO)[C@H](O)[C@@H]1O" 1GN SMILES CACTVS 3.341 "N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O" 1GN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)N)O)O)O" 1GN SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)N)O)O)O" 1GN InChI InChI 1.03 "InChI=1S/C6H13NO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1,7H2/t2-,3-,4+,5-,6-/m1/s1" 1GN InChIKey InChI 1.03 MSWZFWKMSRAUBD-VFUOTHLCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1GN "SYSTEMATIC NAME" ACDLabs 10.04 2-amino-2-deoxy-beta-D-galactopyranose 1GN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R,5R,6R)-3-amino-6-(hydroxymethyl)oxane-2,4,5-triol" 1GN "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGalpNb 1GN "COMMON NAME" GMML 1.0 b-D-galactopyranosamine 1GN "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-GalpN 1GN "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 GalN # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 1GN "CARBOHYDRATE ISOMER" D PDB ? 1GN "CARBOHYDRATE RING" pyranose PDB ? 1GN "CARBOHYDRATE ANOMER" beta PDB ? 1GN "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1GN "Create component" 1999-07-08 RCSB 1GN "Modify descriptor" 2011-06-04 RCSB 1GN "Other modification" 2019-08-12 RCSB 1GN "Other modification" 2019-12-19 RCSB 1GN "Other modification" 2020-07-03 RCSB 1GN "Modify name" 2020-07-17 RCSB 1GN "Modify synonyms" 2020-07-17 RCSB ##