data_1GP
# 
_chem_comp.id                                    1GP 
_chem_comp.name                                  SN-GLYCEROL-1-PHOSPHATE 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C3 H9 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-12-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        172.074 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1GP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2F6X 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1GP C3   C3   C 0 1 N N N N N N 21.131 -28.462 -4.678 2.998  0.727  -0.321 C3   1GP 1  
1GP O3   O3   O 0 1 N N N N N N 19.754 -28.536 -2.716 2.157  -1.521 -0.034 O3   1GP 2  
1GP C2   C2   C 0 1 N N S N N N 19.662 -28.687 -4.128 1.931  -0.157 0.327  C2   1GP 3  
1GP O2   O2   O 0 1 N Y N N N N 21.315 -27.175 -5.345 4.280  0.400  0.221  O2   1GP 4  
1GP C1   C1   C 0 1 N N N N N N 19.165 -30.141 -4.538 0.546  0.277  -0.159 C1   1GP 5  
1GP O1P  O1P  O 0 1 N N N N N N 20.213 -31.145 -4.256 -0.457 -0.470 0.533  O1P  1GP 6  
1GP O2P  O2P  O 0 1 N N N N N N 18.726 -33.285 -4.645 -1.908 -0.100 -1.498 O2P  1GP 7  
1GP O3P  O3P  O 0 1 N N N N N N 20.626 -32.768 -6.077 -3.056 -0.858 0.619  O3P  1GP 8  
1GP O4P  O4P  O 0 1 N N N N N N 21.023 -33.601 -3.841 -2.098 1.579  0.378  O4P  1GP 9  
1GP P    P    P 0 1 N N N N N N 20.114 -32.739 -4.685 -1.880 0.035  -0.024 P    1GP 10 
1GP H31  1H3  H 0 1 N N N N N N 21.322 -29.246 -5.426 2.775  1.774  -0.118 H31  1GP 11 
1GP H32  2H3  H 0 1 N N N N N N 21.826 -28.509 -3.827 3.005  0.558  -1.397 H32  1GP 12 
1GP HO3  HO3  H 0 1 N N N N N N 19.775 -29.393 -2.306 2.102  -1.567 -0.999 HO3  1GP 13 
1GP H2   H2   H 0 1 N N N N N N 18.935 -27.974 -4.543 1.984  -0.055 1.411  H2   1GP 14 
1GP HO2  HO2  H 0 1 N N N N N N 21.355 -26.484 -4.695 4.922  0.978  -0.213 HO2  1GP 15 
1GP H11  1H1  H 0 1 N N N N N N 18.943 -30.151 -5.615 0.408  1.340  0.038  H11  1GP 16 
1GP H12  2H1  H 0 1 N N N N N N 18.263 -30.390 -3.960 0.463  0.091  -1.229 H12  1GP 17 
1GP HO3P HO3P H 0 0 N N N N N N 19.895 -32.774 -6.684 -3.889 -0.523 0.259  HO3P 1GP 18 
1GP HO4P HO4P H 0 0 N N N N N N 21.823 -33.782 -4.320 -2.072 1.622  1.343  HO4P 1GP 19 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1GP C3  C2   SING N N 1  
1GP C3  O2   SING N N 2  
1GP C3  H31  SING N N 3  
1GP C3  H32  SING N N 4  
1GP O3  C2   SING N N 5  
1GP O3  HO3  SING N N 6  
1GP C2  C1   SING N N 7  
1GP C2  H2   SING N N 8  
1GP O2  HO2  SING N N 9  
1GP C1  O1P  SING N N 10 
1GP C1  H11  SING N N 11 
1GP C1  H12  SING N N 12 
1GP O1P P    SING N N 13 
1GP O2P P    DOUB N N 14 
1GP O3P P    SING N N 15 
1GP O3P HO3P SING N N 16 
1GP O4P P    SING N N 17 
1GP O4P HO4P SING N N 18 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1GP SMILES           ACDLabs              10.04 "O=P(O)(O)OCC(O)CO"                                                       
1GP SMILES_CANONICAL CACTVS               3.341 "OC[C@H](O)CO[P](O)(O)=O"                                                 
1GP SMILES           CACTVS               3.341 "OC[CH](O)CO[P](O)(O)=O"                                                  
1GP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H](COP(=O)(O)O)O)O"                                                
1GP SMILES           "OpenEye OEToolkits" 1.5.0 "C(C(COP(=O)(O)O)O)O"                                                     
1GP InChI            InChI                1.03  "InChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m0/s1" 
1GP InChIKey         InChI                1.03  AWUCVROLDVIAJX-VKHMYHEASA-N                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1GP "SYSTEMATIC NAME" ACDLabs              10.04 "(2S)-2,3-dihydroxypropyl dihydrogen phosphate"   
1GP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-2,3-dihydroxypropyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1GP "Create component"         2005-12-27 RCSB 
1GP "Modify leaving atom flag" 2011-01-20 EBI  
1GP "Modify descriptor"        2011-06-04 RCSB 
1GP "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            1GP 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#