data_1GW # _chem_comp.id 1GW _chem_comp.name "5-(2-FORMYLTHIEN-5-YL)-URIDINE-5'-DIPHOSPHATE-ALPHA-D-GALACTOSE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H26 N2 O18 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-08-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 676.436 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1GW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3IOI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1GW N1 N1 N 0 1 N N N 16.400 22.962 7.881 -4.171 -0.988 -0.182 N1 1GW 1 1GW C2 C2 C 0 1 N N N 17.571 23.746 8.138 -4.264 -1.549 -1.398 C2 1GW 2 1GW O2 O2 O 0 1 N N N 18.027 24.387 7.242 -3.588 -2.528 -1.650 O2 1GW 3 1GW N3 N3 N 0 1 N N N 18.151 23.706 9.450 -5.082 -1.060 -2.347 N3 1GW 4 1GW C4 C4 C 0 1 N N N 17.610 22.953 10.451 -5.843 0.025 -2.096 C4 1GW 5 1GW O4 O4 O 0 1 N N N 18.091 22.957 11.553 -6.586 0.474 -2.950 O4 1GW 6 1GW C5 C5 C 0 1 N N N 16.328 22.138 10.147 -5.758 0.655 -0.770 C5 1GW 7 1GW C6 C6 C 0 1 N N N 15.784 22.128 8.904 -4.906 0.110 0.152 C6 1GW 8 1GW PA PA P 0 1 N N N 14.472 18.224 7.394 2.353 -2.592 -0.509 PA 1GW 9 1GW PB PB P 0 1 N N N 12.384 16.299 6.631 4.894 -1.066 -0.539 PB 1GW 10 1GW "C1'" "C1'" C 0 1 N N R 10.034 17.103 5.542 6.701 0.674 0.381 "C1'" 1GW 11 1GW O1A O1A O 0 1 N N N 15.166 17.918 5.960 2.994 -3.779 0.100 O1A 1GW 12 1GW O1B O1B O 0 1 N N N 11.518 15.246 7.558 5.205 -0.856 -2.105 O1B 1GW 13 1GW C1D C1D C 0 1 N N R 15.849 23.059 6.522 -3.265 -1.573 0.810 C1D 1GW 14 1GW "C2'" "C2'" C 0 1 N N R 9.934 17.767 4.192 6.908 1.403 1.712 "C2'" 1GW 15 1GW "O2'" "O2'" O 0 1 N N N 10.879 17.218 3.306 6.549 0.538 2.791 "O2'" 1GW 16 1GW O2A O2A O 0 1 N N N 15.296 17.900 8.551 2.100 -2.864 -2.076 O2A 1GW 17 1GW O2B O2B O 0 1 N N N 13.247 15.680 5.615 5.647 -2.238 -0.040 O2B 1GW 18 1GW C2D C2D C 0 1 N N R 16.638 22.281 5.487 -3.693 -3.020 1.141 C2D 1GW 19 1GW O2D O2D O 0 1 N N N 16.611 22.852 4.183 -4.454 -3.053 2.350 O2D 1GW 20 1GW "C3'" "C3'" C 0 1 N N S 10.220 19.259 4.413 6.025 2.654 1.742 "C3'" 1GW 21 1GW "O3'" "O3'" O 0 1 N N N 10.244 19.963 3.188 6.266 3.379 2.949 "O3'" 1GW 22 1GW O3A O3A O 0 1 N N N 13.134 17.294 7.687 3.316 -1.314 -0.334 O3A 1GW 23 1GW O3B O3B O 0 1 N N N 11.338 17.418 5.989 5.341 0.247 0.278 O3B 1GW 24 1GW C3D C3D C 0 1 N N S 15.968 20.919 5.551 -2.356 -3.774 1.322 C3D 1GW 25 1GW O3D O3D O 0 1 N N N 16.267 20.075 4.458 -2.251 -4.295 2.649 O3D 1GW 26 1GW "C4'" "C4'" C 0 1 N N R 9.102 19.807 5.345 6.366 3.536 0.537 "C4'" 1GW 27 1GW "O4'" "O4'" O 0 1 N N N 7.858 19.841 4.666 7.723 3.973 0.634 "O4'" 1GW 28 1GW C4D C4D C 0 1 N N R 14.462 21.344 5.652 -1.280 -2.693 1.079 C4D 1GW 29 1GW O4D O4D O 0 1 N N N 14.517 22.518 6.547 -1.934 -1.697 0.263 O4D 1GW 30 1GW "C5'" "C5'" C 0 1 N N R 9.077 19.030 6.721 6.180 2.725 -0.748 "C5'" 1GW 31 1GW "O5'" "O5'" O 0 1 N N N 9.020 17.597 6.431 7.006 1.560 -0.698 "O5'" 1GW 32 1GW C5D C5D C 0 1 N N N 13.454 20.282 6.199 -0.084 -3.291 0.333 C5D 1GW 33 1GW O5D O5D O 0 1 N N N 13.985 19.761 7.424 0.947 -2.308 0.221 O5D 1GW 34 1GW "C6'" "C6'" C 0 1 N N N 7.927 19.451 7.665 6.576 3.580 -1.953 "C6'" 1GW 35 1GW "O6'" "O6'" O 0 1 N N N 8.064 20.679 8.304 6.293 2.866 -3.158 "O6'" 1GW 36 1GW OAB OAB O 0 1 N N N 15.042 20.164 15.865 -9.826 3.910 1.922 OAB 1GW 37 1GW CAP CAP C 0 1 Y N N 14.263 19.487 12.355 -7.299 4.023 -0.570 CAP 1GW 38 1GW CAQ CAQ C 0 1 Y N N 14.500 20.288 11.033 -6.440 3.071 -1.035 CAQ 1GW 39 1GW SAZ SAZ S 0 1 Y N N 16.333 21.003 12.727 -7.846 1.896 0.763 SAZ 1GW 40 1GW CBA CBA C 0 1 N N N 15.434 19.315 14.829 -9.120 4.390 1.057 CBA 1GW 41 1GW CBE CBE C 0 1 Y N N 15.345 19.878 13.417 -8.151 3.593 0.418 CBE 1GW 42 1GW CBF CBF C 0 1 Y N N 15.723 21.224 11.228 -6.567 1.844 -0.442 CBF 1GW 43 1GW HN3 HN3 H 0 1 N N N 18.973 24.244 9.635 -5.124 -1.490 -3.216 HN3 1GW 44 1GW H6 H6 H 0 1 N N N 14.920 21.520 8.680 -4.818 0.546 1.136 H6 1GW 45 1GW "H1'" "H1'" H 0 1 N N N 9.872 16.016 5.499 7.359 -0.194 0.336 "H1'" 1GW 46 1GW HO1B HO1B H 0 0 N N N 11.710 14.355 7.290 4.744 -0.103 -2.500 HO1B 1GW 47 1GW H1D H1D H 0 1 N N N 15.884 24.120 6.234 -3.249 -0.964 1.713 H1D 1GW 48 1GW "H2'" "H2'" H 0 1 N N N 8.938 17.615 3.751 7.954 1.693 1.809 "H2'" 1GW 49 1GW "HO2'" "HO2'" H 0 0 N N N 10.806 17.644 2.460 7.066 -0.279 2.829 "HO2'" 1GW 50 1GW HO2A HO2A H 0 0 N N N 16.130 17.552 8.259 1.682 -2.126 -2.540 HO2A 1GW 51 1GW H2D H2D H 0 1 N N N 17.718 22.262 5.697 -4.264 -3.448 0.318 H2D 1GW 52 1GW HO2D HO2D H 0 0 N N N 17.123 22.314 3.591 -4.748 -3.938 2.606 HO2D 1GW 53 1GW "H3'" "H3'" H 0 1 N N N 11.210 19.394 4.872 4.976 2.361 1.694 "H3'" 1GW 54 1GW "HO3'" "HO3'" H 0 0 N N N 10.422 20.881 3.353 6.077 2.878 3.754 "HO3'" 1GW 55 1GW H3D H3D H 0 1 N N N 16.309 20.287 6.384 -2.267 -4.575 0.588 H3D 1GW 56 1GW HO3D HO3D H 0 0 N N N 15.995 19.187 4.659 -2.940 -4.935 2.876 HO3D 1GW 57 1GW "H4'" "H4'" H 0 1 N N N 9.324 20.851 5.609 5.704 4.402 0.521 "H4'" 1GW 58 1GW "HO4'" "HO4'" H 0 0 N N N 7.188 20.178 5.249 7.914 4.490 1.429 "HO4'" 1GW 59 1GW H4D H4D H 0 1 N N N 14.062 21.520 4.642 -0.957 -2.259 2.025 H4D 1GW 60 1GW "H5'" "H5'" H 0 1 N N N 9.995 19.288 7.270 5.136 2.426 -0.842 "H5'" 1GW 61 1GW H5D H5D H 0 1 N N N 12.476 20.751 6.382 0.294 -4.152 0.883 H5D 1GW 62 1GW H5DA H5DA H 0 0 N N N 13.329 19.470 5.468 -0.398 -3.605 -0.663 H5DA 1GW 63 1GW "H6'" "H6'" H 0 1 N N N 7.011 19.501 7.058 6.009 4.511 -1.940 "H6'" 1GW 64 1GW H22 H22 H 0 1 N N N 7.853 18.683 8.449 7.642 3.804 -1.905 H22 1GW 65 1GW H23 H23 H 0 1 N N N 7.306 20.836 8.855 6.520 3.349 -3.964 H23 1GW 66 1GW HAP HAP H 0 1 N N N 13.470 18.770 12.512 -7.306 5.036 -0.945 HAP 1GW 67 1GW HAQ HAQ H 0 1 N N N 13.910 20.204 10.132 -5.716 3.270 -1.811 HAQ 1GW 68 1GW HBA HBA H 0 1 N N N 15.782 18.311 15.019 -9.235 5.426 0.778 HBA 1GW 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1GW N1 C2 SING N N 1 1GW N1 C6 SING N N 2 1GW C2 N3 SING N N 3 1GW O2 C2 DOUB N N 4 1GW N3 C4 SING N N 5 1GW C4 O4 DOUB N N 6 1GW C5 C4 SING N N 7 1GW C5 CBF SING N N 8 1GW C6 C5 DOUB N N 9 1GW PA O5D SING N N 10 1GW PA O3A SING N N 11 1GW PA O2A SING N N 12 1GW PB O1B SING N N 13 1GW PB O3A SING N N 14 1GW "C1'" O3B SING N N 15 1GW "C1'" "O5'" SING N N 16 1GW O1A PA DOUB N N 17 1GW C1D N1 SING N N 18 1GW C1D O4D SING N N 19 1GW "C2'" "C1'" SING N N 20 1GW "C2'" "C3'" SING N N 21 1GW "O2'" "C2'" SING N N 22 1GW O2B PB DOUB N N 23 1GW C2D C1D SING N N 24 1GW C2D C3D SING N N 25 1GW O2D C2D SING N N 26 1GW "C3'" "C4'" SING N N 27 1GW "O3'" "C3'" SING N N 28 1GW O3B PB SING N N 29 1GW C3D C4D SING N N 30 1GW O3D C3D SING N N 31 1GW "C4'" "C5'" SING N N 32 1GW "O4'" "C4'" SING N N 33 1GW C4D C5D SING N N 34 1GW C4D O4D SING N N 35 1GW "C5'" "C6'" SING N N 36 1GW "O5'" "C5'" SING N N 37 1GW C5D O5D SING N N 38 1GW "C6'" "O6'" SING N N 39 1GW CAP CBE DOUB Y N 40 1GW CAQ CAP SING Y N 41 1GW CAQ CBF DOUB Y N 42 1GW SAZ CBE SING Y N 43 1GW CBA OAB DOUB N N 44 1GW CBE CBA SING N N 45 1GW CBF SAZ SING Y N 46 1GW N3 HN3 SING N N 47 1GW C6 H6 SING N N 48 1GW "C1'" "H1'" SING N N 49 1GW O1B HO1B SING N N 50 1GW C1D H1D SING N N 51 1GW "C2'" "H2'" SING N N 52 1GW "O2'" "HO2'" SING N N 53 1GW O2A HO2A SING N N 54 1GW C2D H2D SING N N 55 1GW O2D HO2D SING N N 56 1GW "C3'" "H3'" SING N N 57 1GW "O3'" "HO3'" SING N N 58 1GW C3D H3D SING N N 59 1GW O3D HO3D SING N N 60 1GW "C4'" "H4'" SING N N 61 1GW "O4'" "HO4'" SING N N 62 1GW C4D H4D SING N N 63 1GW "C5'" "H5'" SING N N 64 1GW C5D H5D SING N N 65 1GW C5D H5DA SING N N 66 1GW "C6'" "H6'" SING N N 67 1GW "C6'" H22 SING N N 68 1GW "O6'" H23 SING N N 69 1GW CAP HAP SING N N 70 1GW CAQ HAQ SING N N 71 1GW CBA HBA SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1GW SMILES ACDLabs 11.02 "O=Cc4sc(C=1C(=O)NC(=O)N(C=1)C3OC(COP(=O)(O)OP(=O)(OC2OC(CO)C(O)C(O)C2O)O)C(O)C3O)cc4" 1GW SMILES_CANONICAL CACTVS 3.352 "OC[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=C(C(=O)NC3=O)c4sc(C=O)cc4)[C@H](O)[C@@H](O)[C@H]1O" 1GW SMILES CACTVS 3.352 "OC[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=C(C(=O)NC3=O)c4sc(C=O)cc4)[CH](O)[CH](O)[CH]1O" 1GW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(sc1C=O)C2=CN(C(=O)NC2=O)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)O[C@@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O)O)O" 1GW SMILES "OpenEye OEToolkits" 1.7.0 "c1cc(sc1C=O)C2=CN(C(=O)NC2=O)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OC4C(C(C(C(O4)CO)O)O)O)O)O" 1GW InChI InChI 1.03 ;InChI=1S/C20H26N2O18P2S/c23-4-7-1-2-11(43-7)8-3-22(20(31)21-17(8)30)18-15(28)13(26)10(37-18)6-36-41(32,33)40-42(34,35)39-19-16(29)14(27)12(25)9(5-24)38-19/h1-4,9-10,12-16,18-19,24-29H,5-6H2,(H,32,33)(H,34,35)(H,21,30,31)/t9-,10-,12+,13-,14+,15-,16-,18-,19-/m1/s1 ; 1GW InChIKey InChI 1.03 KKHANSZRQMPJKN-PCGMDOMSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1GW "SYSTEMATIC NAME" ACDLabs 11.02 "{(2R,3S,4R,5R)-5-[5-(5-formylthiophen-2-yl)-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl]-3,4-dihydroxytetrahydrofuran-2-yl}methyl (2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)" 1GW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[[(2R,3S,4R,5R)-3,4-dihydroxy-5-[5-(5-methanoylthiophen-2-yl)-2,4-dioxo-pyrimidin-1-yl]oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1GW "Create component" 2009-08-17 RCSB 1GW "Modify aromatic_flag" 2011-06-04 RCSB 1GW "Modify descriptor" 2011-06-04 RCSB #