data_1HZ # _chem_comp.id 1HZ _chem_comp.name "5'-deoxy-5'-({[2-(2,3-dihydroxyphenyl)ethyl]sulfonyl}amino)adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H22 N6 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-02-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1HZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4IZ6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1HZ O1P O1P O 0 1 N N N N N N -15.070 22.437 13.600 3.005 -3.343 0.522 O1P 1HY 1 1HZ S S S 0 1 N N N N N N -14.206 21.416 14.104 2.698 -2.140 1.214 S 1HY 2 1HZ O2P O2P O 0 1 N N N N N N -13.454 21.862 15.241 2.966 -2.006 2.603 O2P 1HY 3 1HZ C22 C22 C 0 1 N N N N N N -15.114 20.074 14.534 3.326 -0.703 0.303 C22 1HY 4 1HZ C21 C21 C 0 1 N N N N N N -15.751 20.264 15.913 4.856 -0.707 0.335 C21 1HY 5 1HZ C19 C19 C 0 1 Y N N N N N -15.755 19.016 16.800 5.377 0.487 -0.422 C19 1HY 6 1HZ C18 C18 C 0 1 Y N N N N N -15.005 19.036 17.965 5.733 0.361 -1.752 C18 1HY 7 1HZ C17 C17 C 0 1 Y N N N N N -14.975 17.941 18.815 6.212 1.454 -2.449 C17 1HY 8 1HZ C16 C16 C 0 1 Y N N N N N -15.717 16.809 18.512 6.336 2.679 -1.819 C16 1HY 9 1HZ C15 C15 C 0 1 Y N N N N N -16.486 16.771 17.350 5.981 2.812 -0.487 C15 1HY 10 1HZ O15 O15 O 0 1 N N N N N N -17.203 15.632 17.074 6.102 4.017 0.133 O15 1HY 11 1HZ C14 C14 C 0 1 Y N N N N N -16.503 17.886 16.506 5.494 1.713 0.213 C14 1HY 12 1HZ O14 O14 O 0 1 N N N N N N -17.243 17.864 15.373 5.139 1.839 1.520 O14 1HY 13 1HZ "N5'" "N5'" N 0 1 N N N N N N -13.218 21.083 12.903 1.051 -2.014 1.102 "N5'" 1HY 14 1HZ "C5'" "C5'" C 0 1 N N N N N N -12.214 20.056 13.071 0.395 -2.130 -0.203 "C5'" 1HY 15 1HZ "C4'" "C4'" C 0 1 N N R N N N -10.829 20.657 13.266 -1.106 -2.352 -0.001 "C4'" 1HY 16 1HZ "O4'" "O4'" O 0 1 N N N N N N -10.677 21.273 14.548 -1.699 -1.180 0.582 "O4'" 1HY 17 1HZ "C1'" "C1'" C 0 1 N N R N N N -9.326 21.114 14.973 -3.033 -1.068 0.039 "C1'" 1HY 18 1HZ "C2'" "C2'" C 0 1 N N R N N N -8.635 20.260 13.940 -2.850 -1.459 -1.450 "C2'" 1HY 19 1HZ "O2'" "O2'" O 0 1 N N N N N N -8.004 21.177 13.041 -4.073 -1.952 -2.001 "O2'" 1HY 20 1HZ "C3'" "C3'" C 0 1 N N S N N N -9.767 19.583 13.219 -1.789 -2.582 -1.363 "C3'" 1HY 21 1HZ "O3'" "O3'" O 0 1 N N N N N N -9.452 19.343 11.861 -2.416 -3.866 -1.398 "O3'" 1HY 22 1HZ N9 N9 N 0 1 Y N N N N N -9.356 20.412 16.261 -3.523 0.307 0.155 N9 1HY 23 1HZ C8 C8 C 0 1 Y N N N N N -10.422 19.805 16.784 -2.758 1.430 0.260 C8 1HY 24 1HZ N7 N7 N 0 1 Y N N N N N -10.073 19.284 17.984 -3.520 2.481 0.345 N7 1HY 25 1HZ C5 C5 C 0 1 Y N N N N N -8.772 19.559 18.200 -4.820 2.101 0.301 C5 1HY 26 1HZ C6 C6 C 0 1 Y N N N N N -7.886 19.281 19.246 -6.050 2.778 0.350 C6 1HY 27 1HZ N6 N6 N 0 1 N N N N N N -8.282 18.579 20.358 -6.096 4.156 0.470 N6 1HY 28 1HZ N1 N1 N 0 1 Y N N N N N -6.612 19.732 19.123 -7.169 2.064 0.278 N1 1HY 29 1HZ C2 C2 C 0 1 Y N N N N N -6.203 20.419 18.044 -7.135 0.749 0.164 C2 1HY 30 1HZ N3 N3 N 0 1 Y N N N N N -7.030 20.698 17.036 -6.006 0.073 0.114 N3 1HY 31 1HZ C4 C4 C 0 1 Y N N N N N -8.321 20.277 17.096 -4.837 0.701 0.173 C4 1HY 32 1HZ H1 H1 H 0 1 N N N N N N -15.908 19.923 13.788 2.984 -0.750 -0.730 H1 1HY 33 1HZ H2 H2 H 0 1 N N N N N N -14.460 19.190 14.558 2.955 0.211 0.767 H2 1HY 34 1HZ H3 H3 H 0 1 N N N N N N -15.197 21.055 16.439 5.198 -0.660 1.369 H3 1HY 35 1HZ H4 H4 H 0 1 N N N N N N -16.794 20.582 15.767 5.226 -1.621 -0.129 H4 1HY 36 1HZ H5 H5 H 0 1 N N N N N N -14.435 19.919 18.215 5.637 -0.594 -2.247 H5 1HY 37 1HZ H6 H6 H 0 1 N N N N N N -14.374 17.969 19.712 6.490 1.352 -3.488 H6 1HY 38 1HZ H7 H7 H 0 1 N N N N N N -15.699 15.957 19.176 6.711 3.532 -2.366 H7 1HY 39 1HZ H8 H8 H 0 1 N N N N N N -17.061 14.993 17.763 5.312 4.572 0.072 H8 1HY 40 1HZ H9 H9 H 0 1 N N N N N N -17.697 17.032 15.307 5.861 1.671 2.142 H9 1HY 41 1HZ H10 H10 H 0 1 N N N N N N -12.734 21.929 12.681 0.520 -1.863 1.900 H10 1HY 42 1HZ H11 H11 H 0 1 N N N N N N -12.468 19.449 13.953 0.553 -1.214 -0.772 H11 1HY 43 1HZ H12 H12 H 0 1 N N N N N N -12.203 19.417 12.176 0.817 -2.974 -0.748 H12 1HY 44 1HZ H13 H13 H 0 1 N N N N N N -10.639 21.388 12.466 -1.269 -3.213 0.648 H13 1HY 45 1HZ H14 H14 H 0 1 N N N N N N -8.816 22.084 15.068 -3.710 -1.760 0.539 H14 1HY 46 1HZ H15 H15 H 0 1 N N N N N N -7.938 19.540 14.393 -2.476 -0.615 -2.030 H15 1HY 47 1HZ H16 H16 H 0 1 N N N N N N -7.286 21.612 13.485 -4.009 -2.209 -2.931 H16 1HY 48 1HZ H17 H17 H 0 1 N N N N N N -10.094 18.675 13.748 -1.066 -2.488 -2.173 H17 1HY 49 1HZ H18 H18 H 0 1 N N N N N N -8.784 18.669 11.805 -2.862 -4.064 -2.233 H18 1HY 50 1HZ H19 H19 H 0 1 N N N N N N -11.399 19.740 16.328 -1.678 1.446 0.270 H19 1HY 51 1HZ H20 H20 H 0 1 N N N N N N -7.509 18.485 20.986 -5.272 4.666 0.521 H20 1HY 52 1HZ H21 H21 H 0 1 N N N N N N -9.025 19.069 20.814 -6.951 4.612 0.502 H21 1HY 53 1HZ H22 H22 H 0 1 N N N N N N -5.178 20.754 17.991 -8.068 0.208 0.109 H22 1HY 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1HZ "O3'" "C3'" SING N N 1 1HZ "N5'" "C5'" SING N N 2 1HZ "N5'" S SING N N 3 1HZ "O2'" "C2'" SING N N 4 1HZ "C5'" "C4'" SING N N 5 1HZ "C3'" "C4'" SING N N 6 1HZ "C3'" "C2'" SING N N 7 1HZ "C4'" "O4'" SING N N 8 1HZ O1P S DOUB N N 9 1HZ "C2'" "C1'" SING N N 10 1HZ S C22 SING N N 11 1HZ S O2P DOUB N N 12 1HZ C22 C21 SING N N 13 1HZ "O4'" "C1'" SING N N 14 1HZ "C1'" N9 SING N N 15 1HZ O14 C14 SING N N 16 1HZ C21 C19 SING N N 17 1HZ N9 C8 SING Y N 18 1HZ N9 C4 SING Y N 19 1HZ C14 C19 DOUB Y N 20 1HZ C14 C15 SING Y N 21 1HZ C8 N7 DOUB Y N 22 1HZ C19 C18 SING Y N 23 1HZ N3 C4 DOUB Y N 24 1HZ N3 C2 SING Y N 25 1HZ O15 C15 SING N N 26 1HZ C4 C5 SING Y N 27 1HZ C15 C16 DOUB Y N 28 1HZ C18 C17 DOUB Y N 29 1HZ N7 C5 SING Y N 30 1HZ C2 N1 DOUB Y N 31 1HZ C5 C6 DOUB Y N 32 1HZ C16 C17 SING Y N 33 1HZ N1 C6 SING Y N 34 1HZ C6 N6 SING N N 35 1HZ C22 H1 SING N N 36 1HZ C22 H2 SING N N 37 1HZ C21 H3 SING N N 38 1HZ C21 H4 SING N N 39 1HZ C18 H5 SING N N 40 1HZ C17 H6 SING N N 41 1HZ C16 H7 SING N N 42 1HZ O15 H8 SING N N 43 1HZ O14 H9 SING N N 44 1HZ "N5'" H10 SING N N 45 1HZ "C5'" H11 SING N N 46 1HZ "C5'" H12 SING N N 47 1HZ "C4'" H13 SING N N 48 1HZ "C1'" H14 SING N N 49 1HZ "C2'" H15 SING N N 50 1HZ "O2'" H16 SING N N 51 1HZ "C3'" H17 SING N N 52 1HZ "O3'" H18 SING N N 53 1HZ C8 H19 SING N N 54 1HZ N6 H20 SING N N 55 1HZ N6 H21 SING N N 56 1HZ C2 H22 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1HZ SMILES ACDLabs 12.01 "O=S(=O)(NCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)CCc4cccc(O)c4O" 1HZ InChI InChI 1.03 "InChI=1S/C18H22N6O7S/c19-16-12-17(21-7-20-16)24(8-22-12)18-15(28)14(27)11(31-18)6-23-32(29,30)5-4-9-2-1-3-10(25)13(9)26/h1-3,7-8,11,14-15,18,23,25-28H,4-6H2,(H2,19,20,21)/t11-,14-,15-,18-/m1/s1" 1HZ InChIKey InChI 1.03 JESVQFVPCGDKBX-XKLVTHTNSA-N 1HZ SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN[S](=O)(=O)CCc4cccc(O)c4O)[C@@H](O)[C@H]3O" 1HZ SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN[S](=O)(=O)CCc4cccc(O)c4O)[CH](O)[CH]3O" 1HZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(c(c(c1)O)O)CCS(=O)(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" 1HZ SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(c(c(c1)O)O)CCS(=O)(=O)NCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1HZ "SYSTEMATIC NAME" ACDLabs 12.01 "5'-deoxy-5'-({[2-(2,3-dihydroxyphenyl)ethyl]sulfonyl}amino)adenosine" 1HZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-2-[2,3-bis(oxidanyl)phenyl]ethanesulfonamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1HZ "Create component" 2013-02-09 RCSB 1HZ "Initial release" 2013-07-31 RCSB 1HZ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 1HZ _pdbx_chem_comp_pcm.modified_residue_id 4HH _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C21 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SU _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #