data_1JY # _chem_comp.id 1JY _chem_comp.name "N-(4-{[(6S)-2-(hydroxymethyl)-4-oxo-4,6,7,8-tetrahydro-1H-cyclopenta[g]quinazolin-6-yl](prop-2-yn-1-yl)amino}benzoyl)-L-gamma-glutamyl-D-glutamic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H33 N5 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-02-22 _chem_comp.pdbx_modified_date 2013-12-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 647.632 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1JY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ISK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1JY OAF OAF O 0 1 N N N 16.588 25.967 -57.231 6.228 1.266 2.803 OAF 1JY 1 1JY CBI CBI C 0 1 N N N 17.576 26.754 -57.110 6.961 0.500 2.201 CBI 1JY 2 1JY NBA NBA N 0 1 N N N 17.289 28.026 -56.757 8.267 0.403 2.514 NBA 1JY 3 1JY CBL CBL C 0 1 N N N 18.273 28.928 -56.604 9.065 -0.412 1.881 CBL 1JY 4 1JY CAT CAT C 0 1 N N N 17.883 30.328 -56.180 10.514 -0.457 2.295 CAT 1JY 5 1JY OAH OAH O 0 1 N N N 16.719 30.627 -57.031 10.732 0.462 3.367 OAH 1JY 6 1JY NBB NBB N 0 1 N N N 19.568 28.573 -56.799 8.663 -1.213 0.879 NBB 1JY 7 1JY CBM CBM C 0 1 Y N N 19.919 27.333 -57.183 7.347 -1.209 0.463 CBM 1JY 8 1JY CBR CBR C 0 1 Y N N 18.911 26.366 -57.348 6.442 -0.351 1.116 CBR 1JY 9 1JY CAO CAO C 0 1 Y N N 19.248 25.060 -57.765 5.108 -0.319 0.723 CAO 1JY 10 1JY CAN CAN C 0 1 Y N N 21.294 27.063 -57.395 6.897 -2.022 -0.566 CAN 1JY 11 1JY CBK CBK C 0 1 Y N N 21.621 25.772 -57.802 5.569 -1.983 -0.948 CBK 1JY 12 1JY CBN CBN C 0 1 Y N N 20.605 24.739 -58.011 4.678 -1.132 -0.307 CBN 1JY 13 1JY CAV CAV C 0 1 N N N 22.954 25.185 -58.145 4.844 -2.761 -2.026 CAV 1JY 14 1JY CAM CAM C 0 1 N N N 22.544 24.063 -59.127 3.345 -2.622 -1.686 CAM 1JY 15 1JY CBO CBO C 0 1 N N S 21.256 23.480 -58.523 3.300 -1.286 -0.916 CBO 1JY 16 1JY NBU NBU N 0 1 N N N 20.272 22.866 -59.417 3.024 -0.178 -1.834 NBU 1JY 17 1JY CAU CAU C 0 1 N N N 19.969 21.491 -59.107 3.978 0.148 -2.896 CAU 1JY 18 1JY CAL CAL C 0 1 N N N 18.928 21.453 -58.072 3.643 -0.616 -4.109 CAL 1JY 19 1JY CAA CAA C 0 1 N N N 17.992 21.327 -57.266 3.376 -1.226 -5.076 CAA 1JY 20 1JY CBQ CBQ C 0 1 Y N N 19.462 23.532 -60.293 1.855 0.564 -1.697 CBQ 1JY 21 1JY CAS CAS C 0 1 Y N N 18.437 22.833 -60.924 1.537 1.538 -2.640 CAS 1JY 22 1JY CAQ CAQ C 0 1 Y N N 17.626 23.440 -61.854 0.382 2.273 -2.507 CAQ 1JY 23 1JY CAR CAR C 0 1 Y N N 19.709 24.880 -60.636 1.004 0.327 -0.622 CAR 1JY 24 1JY CAP CAP C 0 1 Y N N 18.878 25.490 -61.579 -0.153 1.059 -0.484 CAP 1JY 25 1JY CBP CBP C 0 1 Y N N 17.853 24.767 -62.164 -0.473 2.042 -1.425 CBP 1JY 26 1JY CBJ CBJ C 0 1 N N N 16.989 25.462 -63.177 -1.712 2.829 -1.280 CBJ 1JY 27 1JY OAG OAG O 0 1 N N N 17.253 26.610 -63.479 -1.991 3.680 -2.102 OAG 1JY 28 1JY NBD NBD N 0 1 N N N 15.949 24.825 -63.702 -2.534 2.605 -0.236 NBD 1JY 29 1JY CBT CBT C 0 1 N N S 15.102 25.473 -64.673 -3.765 3.386 -0.092 CBT 1JY 30 1JY CBG CBG C 0 1 N N N 13.830 24.683 -64.749 -3.457 4.681 0.615 CBG 1JY 31 1JY OAD OAD O 0 1 N N N 13.717 23.675 -64.015 -4.440 5.563 0.858 OAD 1JY 32 1JY OAK OAK O 0 1 N N N 12.929 25.027 -65.529 -2.326 4.926 0.962 OAK 1JY 33 1JY CAZ CAZ C 0 1 N N N 15.895 25.397 -65.992 -4.783 2.589 0.726 CAZ 1JY 34 1JY CAX CAX C 0 1 N N N 16.311 23.949 -66.268 -5.189 1.334 -0.050 CAX 1JY 35 1JY CBH CBH C 0 1 N N N 17.189 23.815 -67.501 -6.192 0.548 0.755 CBH 1JY 36 1JY OAE OAE O 0 1 N N N 18.408 23.914 -67.446 -6.547 0.952 1.842 OAE 1JY 37 1JY N N N 0 1 N N N 16.508 23.582 -68.635 -6.694 -0.603 0.267 N 1JY 38 1JY CA CA C 0 1 N N R 17.137 23.413 -69.947 -7.669 -1.367 1.050 CA 1JY 39 1JY C C C 0 1 N N N 16.046 23.149 -70.948 -9.052 -0.825 0.797 C 1JY 40 1JY O O O 0 1 N N N 16.352 22.792 -72.109 -9.208 0.105 0.040 O 1JY 41 1JY OXT OXT O 0 1 N N N 14.847 23.283 -70.574 -10.111 -1.374 1.412 OXT 1JY 42 1JY CB CB C 0 1 N N N 17.793 24.731 -70.314 -7.615 -2.839 0.636 CB 1JY 43 1JY CG CG C 0 1 N N N 16.760 25.830 -70.475 -6.251 -3.423 1.007 CG 1JY 44 1JY CD CD C 0 1 N N N 17.407 27.137 -70.076 -6.197 -4.873 0.599 CD 1JY 45 1JY OE1 OE1 O 0 1 N N N 18.573 27.355 -70.478 -7.152 -5.386 0.066 OE1 1JY 46 1JY OE2 OE2 O 0 1 N N N 16.764 27.950 -69.365 -5.088 -5.594 0.828 OE2 1JY 47 1JY H1 H1 H 0 1 N N N 18.701 31.039 -56.367 10.766 -1.466 2.623 H1 1JY 48 1JY H2 H2 H 0 1 N N N 17.610 30.356 -55.115 11.142 -0.183 1.447 H2 1JY 49 1JY H3 H3 H 0 1 N N N 16.398 31.499 -56.835 11.645 0.485 3.685 H3 1JY 50 1JY H4 H4 H 0 1 N N N 20.284 29.255 -56.652 9.303 -1.798 0.444 H4 1JY 51 1JY H5 H5 H 0 1 N N N 18.479 24.313 -57.895 4.411 0.338 1.222 H5 1JY 52 1JY H6 H6 H 0 1 N N N 22.050 27.820 -57.248 7.584 -2.686 -1.069 H6 1JY 53 1JY H7 H7 H 0 1 N N N 23.456 24.778 -57.255 5.051 -2.332 -3.006 H7 1JY 54 1JY H8 H8 H 0 1 N N N 23.608 25.925 -58.629 5.142 -3.809 -2.002 H8 1JY 55 1JY H9 H9 H 0 1 N N N 23.328 23.294 -59.189 2.746 -2.565 -2.595 H9 1JY 56 1JY H10 H10 H 0 1 N N N 22.353 24.473 -60.130 3.013 -3.445 -1.054 H10 1JY 57 1JY H11 H11 H 0 1 N N N 21.503 22.809 -57.687 2.543 -1.326 -0.132 H11 1JY 58 1JY H12 H12 H 0 1 N N N 19.608 20.980 -60.012 3.929 1.215 -3.114 H12 1JY 59 1JY H13 H13 H 0 1 N N N 20.875 20.988 -58.738 4.986 -0.110 -2.571 H13 1JY 60 1JY H14 H14 H 0 1 N N N 17.193 21.219 -56.578 3.137 -1.771 -5.941 H14 1JY 61 1JY H15 H15 H 0 1 N N N 18.275 21.794 -60.678 2.197 1.716 -3.475 H15 1JY 62 1JY H16 H16 H 0 1 N N N 16.828 22.891 -62.332 0.135 3.029 -3.238 H16 1JY 63 1JY H17 H17 H 0 1 N N N 20.521 25.426 -60.180 1.252 -0.433 0.105 H17 1JY 64 1JY H18 H18 H 0 1 N N N 19.035 26.523 -61.851 -0.813 0.875 0.351 H18 1JY 65 1JY H19 H19 H 0 1 N N N 15.751 23.886 -63.421 -2.312 1.925 0.420 H19 1JY 66 1JY H20 H20 H 0 1 N N N 14.900 26.521 -64.406 -4.177 3.599 -1.078 H20 1JY 67 1JY H21 H21 H 0 1 N N N 12.873 23.265 -64.166 -4.194 6.379 1.314 H21 1JY 68 1JY H22 H22 H 0 1 N N N 16.794 26.026 -65.914 -4.338 2.299 1.678 H22 1JY 69 1JY H23 H23 H 0 1 N N N 15.265 25.759 -66.818 -5.664 3.204 0.909 H23 1JY 70 1JY H24 H24 H 0 1 N N N 15.404 23.344 -66.415 -5.634 1.623 -1.002 H24 1JY 71 1JY H25 H25 H 0 1 N N N 16.867 23.571 -65.397 -4.308 0.719 -0.233 H25 1JY 72 1JY H26 H26 H 0 1 N N N 15.511 23.520 -68.580 -6.411 -0.926 -0.602 H26 1JY 73 1JY H27 H27 H 0 1 N N N 17.874 22.597 -69.941 -7.433 -1.279 2.110 H27 1JY 74 1JY H28 H28 H 0 1 N N N 14.265 23.075 -71.295 -10.978 -0.992 1.218 H28 1JY 75 1JY H29 H29 H 0 1 N N N 18.338 24.609 -71.262 -8.400 -3.391 1.153 H29 1JY 76 1JY H30 H30 H 0 1 N N N 18.498 25.015 -69.519 -7.763 -2.919 -0.441 H30 1JY 77 1JY H31 H31 H 0 1 N N N 16.429 25.881 -71.523 -5.466 -2.871 0.490 H31 1JY 78 1JY H32 H32 H 0 1 N N N 15.895 25.628 -69.826 -6.102 -3.343 2.084 H32 1JY 79 1JY H33 H33 H 0 1 N N N 17.298 28.718 -69.199 -5.101 -6.520 0.549 H33 1JY 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1JY O C DOUB N N 1 1JY C OXT SING N N 2 1JY C CA SING N N 3 1JY OE1 CD DOUB N N 4 1JY CG CB SING N N 5 1JY CG CD SING N N 6 1JY CB CA SING N N 7 1JY CD OE2 SING N N 8 1JY CA N SING N N 9 1JY N CBH SING N N 10 1JY CBH OAE DOUB N N 11 1JY CBH CAX SING N N 12 1JY CAX CAZ SING N N 13 1JY CAZ CBT SING N N 14 1JY OAK CBG DOUB N N 15 1JY CBG CBT SING N N 16 1JY CBG OAD SING N N 17 1JY CBT NBD SING N N 18 1JY NBD CBJ SING N N 19 1JY OAG CBJ DOUB N N 20 1JY CBJ CBP SING N N 21 1JY CBP CAQ DOUB Y N 22 1JY CBP CAP SING Y N 23 1JY CAQ CAS SING Y N 24 1JY CAP CAR DOUB Y N 25 1JY CAS CBQ DOUB Y N 26 1JY CAR CBQ SING Y N 27 1JY CBQ NBU SING N N 28 1JY NBU CAU SING N N 29 1JY NBU CBO SING N N 30 1JY CAM CBO SING N N 31 1JY CAM CAV SING N N 32 1JY CAU CAL SING N N 33 1JY CBO CBN SING N N 34 1JY CAV CBK SING N N 35 1JY CAL CAA TRIP N N 36 1JY CBN CBK DOUB Y N 37 1JY CBN CAO SING Y N 38 1JY CBK CAN SING Y N 39 1JY CAO CBR DOUB Y N 40 1JY CAN CBM DOUB Y N 41 1JY CBR CBM SING Y N 42 1JY CBR CBI SING N N 43 1JY OAF CBI DOUB N N 44 1JY CBM NBB SING N N 45 1JY CBI NBA SING N N 46 1JY OAH CAT SING N N 47 1JY NBB CBL SING N N 48 1JY NBA CBL DOUB N N 49 1JY CBL CAT SING N N 50 1JY CAT H1 SING N N 51 1JY CAT H2 SING N N 52 1JY OAH H3 SING N N 53 1JY NBB H4 SING N N 54 1JY CAO H5 SING N N 55 1JY CAN H6 SING N N 56 1JY CAV H7 SING N N 57 1JY CAV H8 SING N N 58 1JY CAM H9 SING N N 59 1JY CAM H10 SING N N 60 1JY CBO H11 SING N N 61 1JY CAU H12 SING N N 62 1JY CAU H13 SING N N 63 1JY CAA H14 SING N N 64 1JY CAS H15 SING N N 65 1JY CAQ H16 SING N N 66 1JY CAR H17 SING N N 67 1JY CAP H18 SING N N 68 1JY NBD H19 SING N N 69 1JY CBT H20 SING N N 70 1JY OAD H21 SING N N 71 1JY CAZ H22 SING N N 72 1JY CAZ H23 SING N N 73 1JY CAX H24 SING N N 74 1JY CAX H25 SING N N 75 1JY N H26 SING N N 76 1JY CA H27 SING N N 77 1JY OXT H28 SING N N 78 1JY CB H29 SING N N 79 1JY CB H30 SING N N 80 1JY CG H31 SING N N 81 1JY CG H32 SING N N 82 1JY OE2 H33 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1JY SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)CCC(C(=O)O)NC(=O)c1ccc(cc1)N(CC#C)C4c3c(cc2c(C(=O)N=C(N2)CO)c3)CC4)CCC(=O)O" 1JY InChI InChI 1.03 ;InChI=1S/C32H33N5O10/c1-2-13-37(25-10-5-18-14-24-21(15-20(18)25)30(43)36-26(16-38)33-24)19-6-3-17(4-7-19)29(42)35-23(32(46)47)8-11-27(39)34-22(31(44)45)9-12-28(40)41/h1,3-4,6-7,14-15,22-23,25,38H,5,8-13,16H2,(H,34,39)(H,35,42)(H,40,41)(H,44,45)(H,46,47)(H,33,36,43)/t22-,23+,25+/m1/s1 ; 1JY InChIKey InChI 1.03 NVHRBQOZEMFKLD-CUYJMHBOSA-N 1JY SMILES_CANONICAL CACTVS 3.370 "OCC1=NC(=O)c2cc3[C@H](CCc3cc2N1)N(CC#C)c4ccc(cc4)C(=O)N[C@@H](CCC(=O)N[C@H](CCC(O)=O)C(O)=O)C(O)=O" 1JY SMILES CACTVS 3.370 "OCC1=NC(=O)c2cc3[CH](CCc3cc2N1)N(CC#C)c4ccc(cc4)C(=O)N[CH](CCC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O" 1JY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#CCN(c1ccc(cc1)C(=O)N[C@@H](CCC(=O)N[C@H](CCC(=O)O)C(=O)O)C(=O)O)[C@H]2CCc3c2cc4c(c3)NC(=NC4=O)CO" 1JY SMILES "OpenEye OEToolkits" 1.7.6 "C#CCN(c1ccc(cc1)C(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O)O)C(=O)O)C2CCc3c2cc4c(c3)NC(=NC4=O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1JY "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-{[(6S)-2-(hydroxymethyl)-4-oxo-4,6,7,8-tetrahydro-1H-cyclopenta[g]quinazolin-6-yl](prop-2-yn-1-yl)amino}benzoyl)-L-gamma-glutamyl-D-glutamic acid" 1JY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[[(4S)-4-[[4-[[(6S)-2-(hydroxymethyl)-4-oxidanylidene-1,6,7,8-tetrahydrocyclopenta[g]quinazolin-6-yl]-prop-2-ynyl-amino]phenyl]carbonylamino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1JY "Create component" 2013-02-22 RCSB 1JY "Initial release" 2013-12-25 RCSB #