data_1LK # _chem_comp.id 1LK _chem_comp.name "1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-D-arabinitol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 F O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-23 _chem_comp.pdbx_modified_date 2022-03-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 296.081 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1LK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NAJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1LK C1 C1 C 0 1 N N R 13.611 23.534 -4.508 -4.839 -0.600 0.168 C1 1LK 1 1LK C2 C2 C 0 1 N N R 13.006 24.923 -4.525 -4.027 0.687 -0.120 C2 1LK 2 1LK C3 C3 C 0 1 N N R 11.527 24.702 -4.227 -2.680 0.170 -0.659 C3 1LK 3 1LK C4 C4 C 0 1 N N N 10.684 25.638 -5.061 -1.537 0.678 0.221 C4 1LK 4 1LK O1 O1 O 0 1 N N N 9.326 25.754 -4.602 -0.286 0.292 -0.351 O1 1LK 5 1LK O2 O2 O 0 1 N N N 8.708 28.172 -4.813 1.165 0.176 1.711 O2 1LK 6 1LK O3 O3 O 0 1 N N N 6.909 26.456 -5.203 1.337 2.258 0.294 O3 1LK 7 1LK O4 O4 O 0 1 N N N 8.783 26.687 -6.859 2.316 -0.041 -0.524 O4 1LK 8 1LK O5 O5 O 0 1 N N N 6.541 26.230 -7.998 4.468 0.678 0.582 O5 1LK 9 1LK C C5 C 0 1 N N N 12.431 22.689 -4.980 -4.117 -1.645 -0.720 C 1LK 10 1LK O O6 O 0 1 N N N 11.217 23.402 -4.756 -2.727 -1.266 -0.622 O 1LK 11 1LK F F1 F 0 1 N N N 14.699 23.503 -5.404 -4.757 -0.950 1.520 F 1LK 12 1LK O6 O7 O 0 1 N N N 8.390 27.523 -9.148 3.895 -1.779 0.660 O6 1LK 13 1LK O7 O8 O 0 1 N N N 8.662 25.073 -8.726 4.656 -0.621 -1.574 O7 1LK 14 1LK O8 O9 O 0 1 N N N 13.646 25.609 -3.458 -4.687 1.485 -1.104 O8 1LK 15 1LK P P1 P 0 1 N N N 8.381 26.839 -5.330 1.134 0.661 0.313 P 1LK 16 1LK P1 P2 P 0 1 N N N 8.011 26.365 -8.218 3.848 -0.417 -0.197 P1 1LK 17 1LK H1 H1 H 0 1 N N N 13.904 23.251 -3.486 -5.878 -0.480 -0.139 H1 1LK 18 1LK H2 H2 H 0 1 N N N 13.150 25.413 -5.499 -3.878 1.256 0.798 H2 1LK 19 1LK H3 H3 H 0 1 N N N 11.308 24.796 -3.153 -2.536 0.510 -1.685 H3 1LK 20 1LK H5 H4 H 0 1 N N N 10.671 25.265 -6.096 -1.586 1.765 0.288 H5 1LK 21 1LK H6 H5 H 0 1 N N N 11.146 26.636 -5.037 -1.628 0.249 1.219 H6 1LK 22 1LK H7 H6 H 0 1 N N N 6.430 27.168 -4.796 1.328 2.645 -0.592 H7 1LK 23 1LK H4 H7 H 0 1 N N N 12.410 21.743 -4.419 -4.269 -2.651 -0.329 H4 1LK 24 1LK H11 H8 H 0 1 N N N 12.539 22.476 -6.054 -4.462 -1.577 -1.751 H11 1LK 25 1LK H8 H9 H 0 1 N N N 7.602 27.971 -9.434 3.504 -2.541 0.209 H8 1LK 26 1LK H9 H10 H 0 1 N N N 8.000 24.397 -8.814 5.588 -0.849 -1.453 H9 1LK 27 1LK H10 H11 H 0 1 N N N 13.313 26.497 -3.407 -5.566 1.789 -0.839 H10 1LK 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1LK O6 P1 SING N N 1 1LK O7 P1 SING N N 2 1LK P1 O5 DOUB N N 3 1LK P1 O4 SING N N 4 1LK O4 P SING N N 5 1LK F C1 SING N N 6 1LK P O3 SING N N 7 1LK P O2 DOUB N N 8 1LK P O1 SING N N 9 1LK C4 O1 SING N N 10 1LK C4 C3 SING N N 11 1LK C O SING N N 12 1LK C C1 SING N N 13 1LK O C3 SING N N 14 1LK C2 C1 SING N N 15 1LK C2 C3 SING N N 16 1LK C2 O8 SING N N 17 1LK C1 H1 SING N N 18 1LK C2 H2 SING N N 19 1LK C3 H3 SING N N 20 1LK C4 H5 SING N N 21 1LK C4 H6 SING N N 22 1LK O3 H7 SING N N 23 1LK C H4 SING N N 24 1LK C H11 SING N N 25 1LK O6 H8 SING N N 26 1LK O7 H9 SING N N 27 1LK O8 H10 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1LK SMILES ACDLabs 12.01 "OC1C(COP(=O)(O)OP(=O)(O)O)OCC1F" 1LK InChI InChI 1.03 "InChI=1S/C5H11FO9P2/c6-3-1-13-4(5(3)7)2-14-17(11,12)15-16(8,9)10/h3-5,7H,1-2H2,(H,11,12)(H2,8,9,10)/t3-,4-,5+/m1/s1" 1LK InChIKey InChI 1.03 JLUFHMADAUUBBV-WDCZJNDASA-N 1LK SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@H](F)CO[C@@H]1CO[P](O)(=O)O[P](O)(O)=O" 1LK SMILES CACTVS 3.385 "O[CH]1[CH](F)CO[CH]1CO[P](O)(=O)O[P](O)(O)=O" 1LK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]([C@H](O1)COP(=O)(O)OP(=O)(O)O)O)F" 1LK SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(O1)COP(=O)(O)OP(=O)(O)O)O)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1LK "SYSTEMATIC NAME" ACDLabs 12.01 "1,4-anhydro-2-deoxy-2-fluoro-5-O-[(S)-hydroxy(phosphonooxy)phosphoryl]-D-arabinitol" 1LK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{R},4~{R})-4-fluoranyl-3-oxidanyl-oxolan-2-yl]methyl phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1LK "Create component" 2021-06-23 RCSB 1LK "Initial release" 2022-03-23 RCSB ##