data_1M0 # _chem_comp.id 1M0 _chem_comp.name "1-benzyl-2-(4-{[(2R)-2-(2-phenyl-1H-benzimidazol-1-yl)pent-4-en-1-yl]oxy}phenyl)-1H-benzimidazole" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C38 H32 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-03-26 _chem_comp.pdbx_modified_date 2013-05-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.687 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1M0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4JVB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1M0 CBK CBK C 0 1 Y N N 24.604 -8.672 -16.376 3.066 -1.938 0.462 CBK 1M0 1 1M0 CBL CBL C 0 1 Y N N 23.903 -9.719 -16.984 3.042 -2.938 1.416 CBL 1M0 2 1M0 CBM CBM C 0 1 Y N N 23.359 -10.825 -16.310 4.123 -3.788 1.554 CBM 1M0 3 1M0 CBN CBN C 0 1 Y N N 23.591 -10.823 -14.910 5.228 -3.639 0.736 CBN 1M0 4 1M0 CBO CBO C 0 1 Y N N 24.246 -9.720 -14.319 5.251 -2.639 -0.218 CBO 1M0 5 1M0 CBI CBI C 0 1 Y N N 24.763 -8.655 -14.991 4.171 -1.788 -0.354 CBI 1M0 6 1M0 CBH CBH C 0 1 N N N 25.508 -7.551 -14.368 4.194 -0.702 -1.399 CBH 1M0 7 1M0 NBC NBC N 0 1 Y N N 25.582 -7.832 -12.890 4.761 0.519 -0.821 NBC 1M0 8 1M0 CBB CBB C 0 1 Y N N 26.606 -8.547 -12.302 6.067 0.955 -0.944 CBB 1M0 9 1M0 CBG CBG C 0 1 Y N N 27.765 -9.069 -12.788 7.191 0.455 -1.586 CBG 1M0 10 1M0 CBF CBF C 0 1 Y N N 28.687 -9.738 -11.930 8.383 1.145 -1.519 CBF 1M0 11 1M0 CBE CBE C 0 1 Y N N 28.305 -9.834 -10.568 8.468 2.337 -0.814 CBE 1M0 12 1M0 CBD CBD C 0 1 Y N N 27.101 -9.258 -10.087 7.364 2.849 -0.171 CBD 1M0 13 1M0 CBA CBA C 0 1 Y N N 26.276 -8.635 -10.959 6.147 2.163 -0.228 CBA 1M0 14 1M0 NAZ NAZ N 0 1 Y N N 25.078 -7.992 -10.742 4.917 2.405 0.288 NAZ 1M0 15 1M0 CAY CAY C 0 1 Y N N 24.640 -7.530 -11.921 4.096 1.444 -0.062 CAY 1M0 16 1M0 CAV CAV C 0 1 Y N N 23.497 -6.838 -12.198 2.667 1.370 0.310 CAV 1M0 17 1M0 CAU CAU C 0 1 Y N N 22.226 -7.353 -12.484 2.253 1.776 1.579 CAU 1M0 18 1M0 CAT CAT C 0 1 Y N N 21.174 -6.422 -12.833 0.920 1.706 1.922 CAT 1M0 19 1M0 CAW CAW C 0 1 Y N N 23.635 -5.466 -12.262 1.729 0.897 -0.609 CAW 1M0 20 1M0 CAX CAX C 0 1 Y N N 22.638 -4.561 -12.558 0.398 0.830 -0.259 CAX 1M0 21 1M0 CAS CAS C 0 1 Y N N 21.391 -5.024 -12.870 -0.010 1.230 1.007 CAS 1M0 22 1M0 OAR OAR O 0 1 N N N 20.591 -3.929 -13.221 -1.323 1.161 1.349 OAR 1M0 23 1M0 CAQ CAQ C 0 1 N N N 19.233 -3.668 -13.304 -2.226 0.663 0.360 CAQ 1M0 24 1M0 CAJ CAJ C 0 1 N N R 18.553 -3.857 -14.674 -3.648 0.660 0.923 CAJ 1M0 25 1M0 CBJ CBJ C 0 1 N N N 17.057 -3.526 -14.444 -4.059 2.090 1.280 CBJ 1M0 26 1M0 CBP CBP C 0 1 N N N 16.840 -2.441 -13.366 -5.376 2.066 2.012 CBP 1M0 27 1M0 CBQ CBQ C 0 1 N N N 15.927 -2.994 -12.248 -5.482 2.633 3.188 CBQ 1M0 28 1M0 NAI NAI N 0 1 Y N N 19.016 -3.184 -16.024 -4.570 0.123 -0.082 NAI 1M0 29 1M0 CAE CAE C 0 1 Y N N 19.053 -1.921 -16.550 -5.597 0.808 -0.700 CAE 1M0 30 1M0 CAF CAF C 0 1 Y N N 18.804 -0.697 -16.053 -6.081 2.106 -0.611 CAF 1M0 31 1M0 CAA CAA C 0 1 Y N N 18.933 0.473 -16.815 -7.154 2.490 -1.387 CAA 1M0 32 1M0 CAB CAB C 0 1 Y N N 19.387 0.421 -18.149 -7.753 1.588 -2.256 CAB 1M0 33 1M0 CAC CAC C 0 1 Y N N 19.679 -0.884 -18.601 -7.292 0.307 -2.357 CAC 1M0 34 1M0 CAD CAD C 0 1 Y N N 19.507 -1.998 -17.839 -6.204 -0.106 -1.580 CAD 1M0 35 1M0 NAG NAG N 0 1 Y N N 19.733 -3.300 -18.102 -5.536 -1.279 -1.462 NAG 1M0 36 1M0 CAH CAH C 0 1 Y N N 19.385 -3.997 -17.030 -4.570 -1.149 -0.586 CAH 1M0 37 1M0 CAK CAK C 0 1 Y N N 19.542 -5.316 -16.907 -3.628 -2.220 -0.195 CAK 1M0 38 1M0 CAL CAL C 0 1 Y N N 20.748 -5.728 -16.358 -3.369 -3.279 -1.066 CAL 1M0 39 1M0 CAM CAM C 0 1 Y N N 21.059 -7.068 -16.156 -2.489 -4.275 -0.694 CAM 1M0 40 1M0 CAN CAN C 0 1 Y N N 20.124 -8.008 -16.514 -1.863 -4.225 0.539 CAN 1M0 41 1M0 CAO CAO C 0 1 Y N N 18.915 -7.602 -17.060 -2.115 -3.177 1.407 CAO 1M0 42 1M0 CAP CAP C 0 1 Y N N 18.613 -6.258 -17.258 -2.989 -2.172 1.045 CAP 1M0 43 1M0 H1 H1 H 0 1 N N N 25.021 -7.879 -16.978 2.219 -1.276 0.352 H1 1M0 44 1M0 H2 H2 H 0 1 N N N 23.770 -9.673 -18.055 2.178 -3.054 2.055 H2 1M0 45 1M0 H3 H3 H 0 1 N N N 22.812 -11.608 -16.813 4.104 -4.569 2.299 H3 1M0 46 1M0 H4 H4 H 0 1 N N N 23.270 -11.656 -14.303 6.073 -4.303 0.844 H4 1M0 47 1M0 H5 H5 H 0 1 N N N 24.345 -9.722 -13.244 6.114 -2.523 -0.857 H5 1M0 48 1M0 H6 H6 H 0 1 N N N 26.522 -7.496 -14.791 4.805 -1.022 -2.243 H6 1M0 49 1M0 H7 H7 H 0 1 N N N 24.985 -6.599 -14.544 3.178 -0.504 -1.740 H7 1M0 50 1M0 H8 H8 H 0 1 N N N 27.990 -8.975 -13.840 7.133 -0.472 -2.136 H8 1M0 51 1M0 H9 H9 H 0 1 N N N 29.618 -10.146 -12.295 9.257 0.755 -2.019 H9 1M0 52 1M0 H10 H10 H 0 1 N N N 28.948 -10.360 -9.878 9.407 2.868 -0.770 H10 1M0 53 1M0 H11 H11 H 0 1 N N N 26.847 -9.316 -9.039 7.438 3.777 0.376 H11 1M0 54 1M0 H12 H12 H 0 1 N N N 22.036 -8.415 -12.445 2.975 2.146 2.292 H12 1M0 55 1M0 H13 H13 H 0 1 N N N 20.193 -6.806 -13.073 0.598 2.020 2.904 H13 1M0 56 1M0 H14 H14 H 0 1 N N N 24.617 -5.063 -12.061 2.045 0.586 -1.594 H14 1M0 57 1M0 H15 H15 H 0 1 N N N 22.840 -3.500 -12.543 -0.329 0.465 -0.970 H15 1M0 58 1M0 H16 H16 H 0 1 N N N 19.080 -2.621 -13.002 -2.186 1.301 -0.523 H16 1M0 59 1M0 H17 H17 H 0 1 N N N 18.726 -4.334 -12.590 -1.941 -0.353 0.086 H17 1M0 60 1M0 H18 H18 H 0 1 N N N 18.585 -4.939 -14.869 -3.684 0.038 1.817 H18 1M0 61 1M0 H19 H19 H 0 1 N N N 16.627 -3.170 -15.392 -3.297 2.538 1.917 H19 1M0 62 1M0 H20 H20 H 0 1 N N N 16.539 -4.443 -14.128 -4.161 2.677 0.367 H20 1M0 63 1M0 H21 H21 H 0 1 N N N 17.262 -1.447 -13.390 -6.233 1.582 1.566 H21 1M0 64 1M0 H23 H23 H 0 1 N N N 15.666 -2.370 -11.406 -4.625 3.116 3.633 H23 1M0 65 1M0 H24 H24 H 0 1 N N N 15.550 -4.004 -12.309 -6.425 2.616 3.713 H24 1M0 66 1M0 H26 H26 H 0 1 N N N 18.491 -0.611 -15.023 -5.619 2.812 0.063 H26 1M0 67 1M0 H27 H27 H 0 1 N N N 18.681 1.426 -16.374 -7.531 3.500 -1.318 H27 1M0 68 1M0 H28 H28 H 0 1 N N N 19.501 1.299 -18.768 -8.593 1.903 -2.857 H28 1M0 69 1M0 H29 H29 H 0 1 N N N 20.059 -1.005 -19.605 -7.765 -0.387 -3.036 H29 1M0 70 1M0 H30 H30 H 0 1 N N N 21.473 -4.979 -16.077 -3.857 -3.320 -2.028 H30 1M0 71 1M0 H31 H31 H 0 1 N N N 22.007 -7.361 -15.730 -2.288 -5.095 -1.367 H31 1M0 72 1M0 H32 H32 H 0 1 N N N 20.329 -9.059 -16.371 -1.176 -5.007 0.825 H32 1M0 73 1M0 H33 H33 H 0 1 N N N 18.188 -8.350 -17.339 -1.624 -3.144 2.368 H33 1M0 74 1M0 H34 H34 H 0 1 N N N 17.664 -5.964 -17.681 -3.185 -1.355 1.724 H34 1M0 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1M0 CAC CAB DOUB Y N 1 1M0 CAC CAD SING Y N 2 1M0 CAB CAA SING Y N 3 1M0 NAG CAD SING Y N 4 1M0 NAG CAH DOUB Y N 5 1M0 CAD CAE DOUB Y N 6 1M0 CAP CAO DOUB Y N 7 1M0 CAP CAK SING Y N 8 1M0 CAO CAN SING Y N 9 1M0 CAH CAK SING N N 10 1M0 CAH NAI SING Y N 11 1M0 CBL CBK DOUB Y N 12 1M0 CBL CBM SING Y N 13 1M0 CAK CAL DOUB Y N 14 1M0 CAA CAF DOUB Y N 15 1M0 CAE CAF SING Y N 16 1M0 CAE NAI SING Y N 17 1M0 CAN CAM DOUB Y N 18 1M0 CBK CBI SING Y N 19 1M0 CAL CAM SING Y N 20 1M0 CBM CBN DOUB Y N 21 1M0 NAI CAJ SING N N 22 1M0 CBI CBH SING N N 23 1M0 CBI CBO DOUB Y N 24 1M0 CBN CBO SING Y N 25 1M0 CAJ CBJ SING N N 26 1M0 CAJ CAQ SING N N 27 1M0 CBJ CBP SING N N 28 1M0 CBH NBC SING N N 29 1M0 CBP CBQ DOUB N N 30 1M0 CAQ OAR SING N N 31 1M0 OAR CAS SING N N 32 1M0 NBC CBB SING Y N 33 1M0 NBC CAY SING Y N 34 1M0 CAS CAT DOUB Y N 35 1M0 CAS CAX SING Y N 36 1M0 CAT CAU SING Y N 37 1M0 CBG CBB DOUB Y N 38 1M0 CBG CBF SING Y N 39 1M0 CAX CAW DOUB Y N 40 1M0 CAU CAV DOUB Y N 41 1M0 CBB CBA SING Y N 42 1M0 CAW CAV SING Y N 43 1M0 CAV CAY SING N N 44 1M0 CBF CBE DOUB Y N 45 1M0 CAY NAZ DOUB Y N 46 1M0 CBA NAZ SING Y N 47 1M0 CBA CBD DOUB Y N 48 1M0 CBE CBD SING Y N 49 1M0 CBK H1 SING N N 50 1M0 CBL H2 SING N N 51 1M0 CBM H3 SING N N 52 1M0 CBN H4 SING N N 53 1M0 CBO H5 SING N N 54 1M0 CBH H6 SING N N 55 1M0 CBH H7 SING N N 56 1M0 CBG H8 SING N N 57 1M0 CBF H9 SING N N 58 1M0 CBE H10 SING N N 59 1M0 CBD H11 SING N N 60 1M0 CAU H12 SING N N 61 1M0 CAT H13 SING N N 62 1M0 CAW H14 SING N N 63 1M0 CAX H15 SING N N 64 1M0 CAQ H16 SING N N 65 1M0 CAQ H17 SING N N 66 1M0 CAJ H18 SING N N 67 1M0 CBJ H19 SING N N 68 1M0 CBJ H20 SING N N 69 1M0 CBP H21 SING N N 70 1M0 CBQ H23 SING N N 71 1M0 CBQ H24 SING N N 72 1M0 CAF H26 SING N N 73 1M0 CAA H27 SING N N 74 1M0 CAB H28 SING N N 75 1M0 CAC H29 SING N N 76 1M0 CAL H30 SING N N 77 1M0 CAM H31 SING N N 78 1M0 CAN H32 SING N N 79 1M0 CAO H33 SING N N 80 1M0 CAP H34 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1M0 SMILES ACDLabs 12.01 "n2c1ccccc1n(c2c6ccc(OCC(n4c5ccccc5nc4c3ccccc3)C\C=C)cc6)Cc7ccccc7" 1M0 InChI InChI 1.03 "InChI=1S/C38H32N4O/c1-2-13-31(42-36-21-12-10-19-34(36)40-38(42)29-16-7-4-8-17-29)27-43-32-24-22-30(23-25-32)37-39-33-18-9-11-20-35(33)41(37)26-28-14-5-3-6-15-28/h2-12,14-25,31H,1,13,26-27H2/t31-/m1/s1" 1M0 InChIKey InChI 1.03 VETKHSOXOHNPCG-WJOKGBTCSA-N 1M0 SMILES_CANONICAL CACTVS 3.370 "C=CC[C@H](COc1ccc(cc1)c2nc3ccccc3n2Cc4ccccc4)n5c6ccccc6nc5c7ccccc7" 1M0 SMILES CACTVS 3.370 "C=CC[CH](COc1ccc(cc1)c2nc3ccccc3n2Cc4ccccc4)n5c6ccccc6nc5c7ccccc7" 1M0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C=CC[C@H](COc1ccc(cc1)c2nc3ccccc3n2Cc4ccccc4)n5c6ccccc6nc5c7ccccc7" 1M0 SMILES "OpenEye OEToolkits" 1.7.6 "C=CCC(COc1ccc(cc1)c2nc3ccccc3n2Cc4ccccc4)n5c6ccccc6nc5c7ccccc7" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1M0 "SYSTEMATIC NAME" ACDLabs 12.01 "1-benzyl-2-(4-{[(2R)-2-(2-phenyl-1H-benzimidazol-1-yl)pent-4-en-1-yl]oxy}phenyl)-1H-benzimidazole" 1M0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-phenyl-1-[(2R)-1-[4-[1-(phenylmethyl)benzimidazol-2-yl]phenoxy]pent-4-en-2-yl]benzimidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1M0 "Create component" 2013-03-26 RCSB 1M0 "Modify formula" 2013-04-08 RCSB 1M0 "Initial release" 2013-05-22 RCSB #